RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 IQCKQ8N0W5 287 aa11.96□□□□□ -0.5
SYNPO-202ENST00000394243 SLC34A3Q8N130 599 aa11.96□□□□□ -0.5
SYNPO-202ENST00000394243 PRELID2Q8N945 189 aa11.96□□□□□ -0.5
SYNPO-202ENST00000394243 FAM129BQ96TA1 746 aa11.96□□□□□ -0.5
SYNPO-202ENST00000394243 FAM50BQ9Y247 325 aa11.96□□□□□ -0.5
SYNPO-202ENST00000394243 NDUFB5O43674 189 aa11.96□□□□□ -0.5
SYNPO-202ENST00000394243 LIASO43766 372 aa11.96□□□□□ -0.5
SYNPO-202ENST00000394243 SCRN3Q0VDG4 424 aa11.96□□□□□ -0.5
SYNPO-202ENST00000394243 TBC1D21Q8IYX1 336 aa11.96□□□□□ -0.5
SYNPO-202ENST00000394243 ZBTB8BQ8NAP8 495 aaPredicted RBP11.96□□□□□ -0.5
SYNPO-202ENST00000394243 LPCAT1Q8NF37 534 aa11.96□□□□□ -0.5
SYNPO-202ENST00000394243 C1GALT1C1Q96EU7 318 aa11.96□□□□□ -0.5
SYNPO-202ENST00000394243 DIRAS2Q96HU8 199 aa11.96□□□□□ -0.5
SYNPO-202ENST00000394243 EBF3Q9H4W6 596 aa11.96□□□□□ -0.5
SYNPO-202ENST00000394243 EXD2Q9NVH0 621 aa11.96□□□□□ -0.5
SYNPO-202ENST00000394243 TRHDEQ9UKU6 1024 aa11.96□□□□□ -0.5
SYNPO-202ENST00000394243 BAZ2BQ9UIF8 2168 aaKnown RBP11.96□□□□□ -0.5
SYNPO-202ENST00000394243 A0A0G2JPF8 293 aa11.96□□□□□ -0.5
SYNPO-202ENST00000394243 A0A0X1KG70 313 aa11.96□□□□□ -0.5
SYNPO-202ENST00000394243 HNRNPCL3B7ZW38 293 aa11.96□□□□□ -0.5
SYNPO-202ENST00000394243 F8VP50 259 aa11.96□□□□□ -0.5
SYNPO-202ENST00000394243 MICAL2O94851 1124 aa11.96□□□□□ -0.5
SYNPO-202ENST00000394243 HLA-DQA2P01906 255 aa11.96□□□□□ -0.5
SYNPO-202ENST00000394243 LTA4HP09960 611 aaKnown RBP11.96□□□□□ -0.5
SYNPO-202ENST00000394243 HNRNPCL4P0DMR1 293 aa11.96□□□□□ -0.5
SYNPO-202ENST00000394243 TUBA3CQ13748 450 aa11.96□□□□□ -0.5
SYNPO-202ENST00000394243 HKDC1Q2TB90 917 aa11.96□□□□□ -0.5
SYNPO-202ENST00000394243 MTSS1LQ765P7 747 aa11.96□□□□□ -0.5
SYNPO-202ENST00000394243 CARNMT1Q8N4J0 409 aa11.96□□□□□ -0.5
SYNPO-202ENST00000394243 ALLCQ8N6M5 410 aa11.96□□□□□ -0.5
SYNPO-202ENST00000394243 GPN1Q9HCN4 374 aaPredicted RBP11.96□□□□□ -0.5
SYNPO-202ENST00000394243 IRAK3Q9Y616 596 aa11.96□□□□□ -0.5
SYNPO-202ENST00000394243 ATP6AP2A0A1C7CYW4 349 aa11.95□□□□□ -0.5
SYNPO-202ENST00000394243 CCDC189A1A4V9 331 aa11.95□□□□□ -0.5
SYNPO-202ENST00000394243 ATP6AP2O75787 350 aa11.95□□□□□ -0.5
SYNPO-202ENST00000394243 ENO2P09104 434 aaPredicted RBP11.95□□□□□ -0.5
SYNPO-202ENST00000394243 ODC1P11926 461 aa11.95□□□□□ -0.5
SYNPO-202ENST00000394243 HGFP14210 728 aa11.95□□□□□ -0.5
SYNPO-202ENST00000394243 GTF2E2P29084 291 aaKnown RBP11.95□□□□□ -0.5
SYNPO-202ENST00000394243 NAMPTP43490 491 aa11.95□□□□□ -0.5
SYNPO-202ENST00000394243 FBXO42Q6P3S6 717 aa11.95□□□□□ -0.5
SYNPO-202ENST00000394243 WDR59Q6PJI9 974 aa11.95□□□□□ -0.5
SYNPO-202ENST00000394243 SCIMPQ6UWF3 145 aa11.95□□□□□ -0.5
SYNPO-202ENST00000394243 TRABD2AQ86V40 505 aa11.95□□□□□ -0.5
SYNPO-202ENST00000394243 WDR49Q8IV35 697 aa11.95□□□□□ -0.5
SYNPO-202ENST00000394243 SAMD3Q8N6K7 520 aa11.95□□□□□ -0.5
SYNPO-202ENST00000394243 OSBPL7Q9BZF2 842 aa11.95□□□□□ -0.5
SYNPO-202ENST00000394243 CDH19Q9H159 772 aa11.95□□□□□ -0.5
SYNPO-202ENST00000394243 UBQLN1Q9UMX0 589 aaKnown RBP11.95□□□□□ -0.5
SYNPO-202ENST00000394243 TBC1D30Q9Y2I9 924 aa11.95□□□□□ -0.5
SYNPO-202ENST00000394243 POLR1DQ9Y2S0 133 aa11.95□□□□□ -0.5
SYNPO-202ENST00000394243 GAKO14976 1311 aa11.95□□□□□ -0.5
SYNPO-202ENST00000394243 FAM205AQ6ZU69 1335 aa11.95□□□□□ -0.5
SYNPO-202ENST00000394243 HBP1O60381 514 aa11.95□□□□□ -0.5
SYNPO-202ENST00000394243 LRIG2O94898 1065 aa11.95□□□□□ -0.5
SYNPO-202ENST00000394243 AP2A2O94973 939 aa11.95□□□□□ -0.5
SYNPO-202ENST00000394243 KDELR1P24390 212 aa11.95□□□□□ -0.5
SYNPO-202ENST00000394243 AZGP1P25311 298 aaKnown RBP11.95□□□□□ -0.5
SYNPO-202ENST00000394243 PEX2P28328 305 aa11.95□□□□□ -0.5
SYNPO-202ENST00000394243 ECT2LQ008S8 904 aa11.95□□□□□ -0.5
SYNPO-202ENST00000394243 ENPEPQ07075 957 aa11.95□□□□□ -0.5
SYNPO-202ENST00000394243 SUZ12Q15022 739 aaKnown RBP11.95□□□□□ -0.5
SYNPO-202ENST00000394243 SKIV2LQ15477 1246 aaKnown RBP11.95□□□□□ -0.5
SYNPO-202ENST00000394243 SWI5Q1ZZU3 235 aa11.95□□□□□ -0.5
SYNPO-202ENST00000394243 C12orf56Q8IXR9 622 aa11.95□□□□□ -0.5
SYNPO-202ENST00000394243 CHPFQ8IZ52 775 aa11.95□□□□□ -0.5
SYNPO-202ENST00000394243 ADGRF2Q8IZF7 708 aa11.95□□□□□ -0.5
SYNPO-202ENST00000394243 UBE2J2Q8N2K1 259 aa11.95□□□□□ -0.5
SYNPO-202ENST00000394243 UCMAQ8WVF2 138 aa11.95□□□□□ -0.5
SYNPO-202ENST00000394243 STARD8Q92502 1023 aa11.95□□□□□ -0.5
SYNPO-202ENST00000394243 TUBGCP5Q96RT8 1024 aa11.95□□□□□ -0.5
SYNPO-202ENST00000394243 RASSF1Q9NS23 344 aa11.95□□□□□ -0.5
SYNPO-202ENST00000394243 COL15A1P39059 1388 aa11.95□□□□□ -0.5
SYNPO-202ENST00000394243 HACD1B0YJ81 288 aa11.95□□□□□ -0.5
SYNPO-202ENST00000394243 ATP5F1P24539 256 aaPredicted RBP11.95□□□□□ -0.5
SYNPO-202ENST00000394243 ZNF268Q14587 947 aaPredicted RBP11.95□□□□□ -0.5
SYNPO-202ENST00000394243 PDCD4Q53EL6 469 aaKnown RBP11.95□□□□□ -0.5
SYNPO-202ENST00000394243 PALB2Q86YC2 1186 aa11.95□□□□□ -0.5
SYNPO-202ENST00000394243 DSELQ8IZU8 1212 aa11.95□□□□□ -0.5
SYNPO-202ENST00000394243 PIH1D2Q8WWB5 315 aa11.95□□□□□ -0.5
SYNPO-202ENST00000394243 C11orf24Q96F05 449 aaPredicted RBP11.95□□□□□ -0.5
SYNPO-202ENST00000394243 ZFP14Q9HCL3 533 aa11.95□□□□□ -0.5
SYNPO-202ENST00000394243 PLCL2Q9UPR0 1127 aa11.95□□□□□ -0.5
SYNPO-202ENST00000394243 TOR1BO14657 336 aa11.95□□□□□ -0.5
SYNPO-202ENST00000394243 OR5F1O95221 314 aa11.95□□□□□ -0.5
SYNPO-202ENST00000394243 MTHFRP42898 656 aa11.95□□□□□ -0.5
SYNPO-202ENST00000394243 MAZP56270 477 aaKnown RBP11.95□□□□□ -0.5
SYNPO-202ENST00000394243 TUBA1BP68363 451 aa11.95□□□□□ -0.5
SYNPO-202ENST00000394243 SMU1Q2TAY7 513 aa11.95□□□□□ -0.5
SYNPO-202ENST00000394243 LIPMQ5VYY2 423 aa11.95□□□□□ -0.5
SYNPO-202ENST00000394243 MPZL3Q6UWV2 235 aa11.95□□□□□ -0.5
SYNPO-202ENST00000394243 TUBA1AQ71U36 451 aa11.95□□□□□ -0.5
SYNPO-202ENST00000394243 TRPM1Q7Z4N2 1603 aa11.95□□□□□ -0.5
SYNPO-202ENST00000394243 ZNF438Q7Z4V0 828 aa11.95□□□□□ -0.5
SYNPO-202ENST00000394243 SPPL2CQ8IUH8 684 aa11.95□□□□□ -0.5
SYNPO-202ENST00000394243 SAMD9LQ8IVG5 1584 aa11.95□□□□□ -0.5
SYNPO-202ENST00000394243 OR52K1Q8NGK4 314 aa11.95□□□□□ -0.5
SYNPO-202ENST00000394243 ITGA11Q9UKX5 1188 aa11.95□□□□□ -0.5
SYNPO-202ENST00000394243 RGS10O43665 173 aa11.95□□□□□ -0.5
SYNPO-202ENST00000394243 METTL18O95568 372 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms