RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 TRIM13O60858 407 aa9.78□□□□□ -0.84
COL6A3-204ENST00000392003 ZNF623O75123 536 aa9.78□□□□□ -0.84
COL6A3-204ENST00000392003 ADAMTS4O75173 837 aa9.78□□□□□ -0.84
COL6A3-204ENST00000392003 KRT36O76013 467 aa9.78□□□□□ -0.84
COL6A3-204ENST00000392003 C2P06681 752 aa9.78□□□□□ -0.84
COL6A3-204ENST00000392003 HTR7P34969 479 aa9.78□□□□□ -0.84
COL6A3-204ENST00000392003 ABCG1P45844 678 aa9.78□□□□□ -0.84
COL6A3-204ENST00000392003 SLC34A1Q06495 639 aa9.78□□□□□ -0.84
COL6A3-204ENST00000392003 TMED1Q13445 227 aa9.78□□□□□ -0.84
COL6A3-204ENST00000392003 UBAP2LQ14157 1087 aaKnown RBP9.78□□□□□ -0.84
COL6A3-204ENST00000392003 ANO4Q32M45 955 aa9.78□□□□□ -0.84
COL6A3-204ENST00000392003 ACSBG2Q5FVE4 666 aa9.78□□□□□ -0.84
COL6A3-204ENST00000392003 PPHLN1Q8NEY8 458 aaKnown RBP9.78□□□□□ -0.84
COL6A3-204ENST00000392003 IPMKQ8NFU5 416 aa9.78□□□□□ -0.84
COL6A3-204ENST00000392003 DTX3LQ8TDB6 740 aa9.78□□□□□ -0.84
COL6A3-204ENST00000392003 AZIN2Q96A70 460 aa9.78□□□□□ -0.84
COL6A3-204ENST00000392003 UROC1Q96N76 676 aa9.78□□□□□ -0.84
COL6A3-204ENST00000392003 TRPV6Q9H1D0 765 aa9.78□□□□□ -0.84
COL6A3-204ENST00000392003 TMEM30AQ9NV96 361 aa9.78□□□□□ -0.84
COL6A3-204ENST00000392003 ZNF358Q9NW07 568 aa9.78□□□□□ -0.84
COL6A3-204ENST00000392003 SSX2IPQ9Y2D8 614 aa9.78□□□□□ -0.84
COL6A3-204ENST00000392003 ANKRD6Q9Y2G4 727 aa9.78□□□□□ -0.84
COL6A3-204ENST00000392003 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP9.77□□□□□ -0.84
COL6A3-204ENST00000392003 CCDC78A2IDD5 438 aa9.77□□□□□ -0.84
COL6A3-204ENST00000392003 TM7SF2O76062 418 aa9.77□□□□□ -0.84
COL6A3-204ENST00000392003 TMCC1O94876 653 aa9.77□□□□□ -0.84
COL6A3-204ENST00000392003 PAMP19021 973 aa9.77□□□□□ -0.84
COL6A3-204ENST00000392003 OR1G1P47890 313 aa9.77□□□□□ -0.84
COL6A3-204ENST00000392003 RAP1GDS1P52306 607 aa9.77□□□□□ -0.84
COL6A3-204ENST00000392003 PCID2Q5JVF3 399 aa9.77□□□□□ -0.84
COL6A3-204ENST00000392003 C1orf146Q5VVC0 180 aa9.77□□□□□ -0.84
COL6A3-204ENST00000392003 FAM171BQ6P995 826 aa9.77□□□□□ -0.84
COL6A3-204ENST00000392003 OTOP3Q7RTS5 596 aa9.77□□□□□ -0.84
COL6A3-204ENST00000392003 NET1Q7Z628 596 aaPredicted RBP9.77□□□□□ -0.84
COL6A3-204ENST00000392003 TNS4Q8IZW8 715 aa9.77□□□□□ -0.84
COL6A3-204ENST00000392003 SCML4Q8N228 414 aa9.77□□□□□ -0.84
COL6A3-204ENST00000392003 CMTM5Q96DZ9 223 aa9.77□□□□□ -0.84
COL6A3-204ENST00000392003 TSGA13Q96PP4 275 aa9.77□□□□□ -0.84
COL6A3-204ENST00000392003 TBL1YQ9BQ87 522 aa9.77□□□□□ -0.84
COL6A3-204ENST00000392003 UPF3AQ9H1J1 476 aaKnown RBP9.77□□□□□ -0.84
COL6A3-204ENST00000392003 TASP1Q9H6P5 420 aa9.77□□□□□ -0.84
COL6A3-204ENST00000392003 CAB39LQ9H9S4 337 aa9.77□□□□□ -0.84
COL6A3-204ENST00000392003 HMX1Q9NP08 348 aaPredicted RBP9.77□□□□□ -0.84
COL6A3-204ENST00000392003 LRRC42Q9Y546 428 aa9.77□□□□□ -0.84
COL6A3-204ENST00000392003 A0A0U1RQF3 1178 aa9.77□□□□□ -0.85
COL6A3-204ENST00000392003 TMEM114B3SHH9 223 aa9.77□□□□□ -0.85
COL6A3-204ENST00000392003 F8W8V4 182 aa9.77□□□□□ -0.85
COL6A3-204ENST00000392003 I6L893 689 aaPredicted RBP9.77□□□□□ -0.85
COL6A3-204ENST00000392003 IRAK2O43187 625 aa9.77□□□□□ -0.85
COL6A3-204ENST00000392003 MOCS2O96007 188 aaPredicted RBP9.77□□□□□ -0.85
COL6A3-204ENST00000392003 CYP11A1P05108 521 aa9.77□□□□□ -0.85
COL6A3-204ENST00000392003 GSTT2P0CG29 244 aa9.77□□□□□ -0.85
COL6A3-204ENST00000392003 GSTT2BP0CG30 244 aa9.77□□□□□ -0.85
COL6A3-204ENST00000392003 AOC1P19801 751 aa9.77□□□□□ -0.85
COL6A3-204ENST00000392003 NMBRP28336 390 aa9.77□□□□□ -0.85
COL6A3-204ENST00000392003 COPAP53621 1224 aa9.77□□□□□ -0.85
COL6A3-204ENST00000392003 ASPHQ12797 758 aa9.77□□□□□ -0.85
COL6A3-204ENST00000392003 DYNC1I2Q13409 638 aaKnown RBP9.77□□□□□ -0.85
COL6A3-204ENST00000392003 LPIN1Q14693 890 aa9.77□□□□□ -0.85
COL6A3-204ENST00000392003 HSF5Q4G112 596 aaPredicted RBP9.77□□□□□ -0.85
COL6A3-204ENST00000392003 TIGD7Q6NT04 549 aaPredicted RBP9.77□□□□□ -0.85
COL6A3-204ENST00000392003 ISL2Q96A47 359 aa9.77□□□□□ -0.85
COL6A3-204ENST00000392003 PGLYRP2Q96PD5 576 aa9.77□□□□□ -0.85
COL6A3-204ENST00000392003 HAPLN3Q96S86 360 aa9.77□□□□□ -0.85
COL6A3-204ENST00000392003 SH3GL1Q99961 368 aa9.77□□□□□ -0.85
COL6A3-204ENST00000392003 FSD1LQ9BXM9 530 aa9.77□□□□□ -0.85
COL6A3-204ENST00000392003 PCDHB12Q9Y5F1 795 aa9.77□□□□□ -0.85
COL6A3-204ENST00000392003 SEC23IPQ9Y6Y8 1000 aaKnown RBP9.77□□□□□ -0.85
COL6A3-204ENST00000392003 MAGEA13PA6NCF6 341 aa9.77□□□□□ -0.85
COL6A3-204ENST00000392003 GOLGA8TH3BQL2 631 aa9.77□□□□□ -0.85
COL6A3-204ENST00000392003 GSRP00390 522 aa9.77□□□□□ -0.85
COL6A3-204ENST00000392003 HSPA8P11142 646 aaKnown RBP9.77□□□□□ -0.85
COL6A3-204ENST00000392003 ETS2P15036 469 aa9.77□□□□□ -0.85
COL6A3-204ENST00000392003 HARS2P49590 506 aaKnown RBP9.77□□□□□ -0.85
COL6A3-204ENST00000392003 IDH3AP50213 366 aa9.77□□□□□ -0.85
COL6A3-204ENST00000392003 SLC12A2P55011 1212 aa9.77□□□□□ -0.85
COL6A3-204ENST00000392003 ARPP19P56211 112 aa9.77□□□□□ -0.85
COL6A3-204ENST00000392003 SNX30Q5VWJ9 437 aa9.77□□□□□ -0.85
COL6A3-204ENST00000392003 BEND5Q7L4P6 421 aa9.77□□□□□ -0.85
COL6A3-204ENST00000392003 PPP1R14BQ96C90 147 aa9.77□□□□□ -0.85
COL6A3-204ENST00000392003 FICDQ9BVA6 458 aa9.77□□□□□ -0.85
COL6A3-204ENST00000392003 ILKAPQ9H0C8 392 aaPredicted RBP9.77□□□□□ -0.85
COL6A3-204ENST00000392003 RHOJQ9H4E5 214 aa9.77□□□□□ -0.85
COL6A3-204ENST00000392003 GLOD4Q9HC38 313 aa9.77□□□□□ -0.85
COL6A3-204ENST00000392003 DLGAP2Q9P1A6 1054 aa9.77□□□□□ -0.85
COL6A3-204ENST00000392003 LRFN2Q9ULH4 789 aa9.77□□□□□ -0.85
COL6A3-204ENST00000392003 ZNF711Q9Y462 761 aa9.77□□□□□ -0.85
COL6A3-204ENST00000392003 MAP3K7O43318 606 aa9.76□□□□□ -0.85
COL6A3-204ENST00000392003 PAGE1O75459 146 aa9.76□□□□□ -0.85
COL6A3-204ENST00000392003 ATP6V1C1P21283 382 aa9.76□□□□□ -0.85
COL6A3-204ENST00000392003 PRKAA2P54646 552 aa9.76□□□□□ -0.85
COL6A3-204ENST00000392003 ARPC4P59998 168 aa9.76□□□□□ -0.85
COL6A3-204ENST00000392003 AP2B1P63010 937 aa9.76□□□□□ -0.85
COL6A3-204ENST00000392003 PKN3Q6P5Z2 889 aa9.76□□□□□ -0.85
COL6A3-204ENST00000392003 TMEM154Q6P9G4 183 aa9.76□□□□□ -0.85
COL6A3-204ENST00000392003 ULK2Q8IYT8 1036 aa9.76□□□□□ -0.85
COL6A3-204ENST00000392003 PLD6Q8N2A8 252 aaKnown RBP9.76□□□□□ -0.85
COL6A3-204ENST00000392003 C7orf57Q8NEG2 295 aa9.76□□□□□ -0.85
COL6A3-204ENST00000392003 SCAMP5Q8TAC9 235 aa9.76□□□□□ -0.85
COL6A3-204ENST00000392003 RDH11Q8TC12 318 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms