RNA–Protein interactions for RNA: ENST00000374877.7

CCDC40-203, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC40, Length 3,544 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-203ENST00000374877 CERCAMQ5T4B2 595 aa11.24□□□□□ -0.61
CCDC40-203ENST00000374877 CLEC14AQ86T13 490 aa11.24□□□□□ -0.61
CCDC40-203ENST00000374877 KCNMB4Q86W47 210 aa11.24□□□□□ -0.61
CCDC40-203ENST00000374877 CHERPQ8IWX8 916 aaKnown RBP11.24□□□□□ -0.61
CCDC40-203ENST00000374877 SLC2A11Q9BYW1 496 aa11.24□□□□□ -0.61
CCDC40-203ENST00000374877 PRMT7Q9NVM4 692 aaPredicted RBP11.24□□□□□ -0.61
CCDC40-203ENST00000374877 SMIM35A0A1B0GVV1 85 aa11.24□□□□□ -0.61
CCDC40-203ENST00000374877 KCNU1A8MYU2 1149 aa11.24□□□□□ -0.61
CCDC40-203ENST00000374877 TIMM44O43615 452 aa11.24□□□□□ -0.61
CCDC40-203ENST00000374877 PRKAR2AP13861 404 aaKnown RBP11.24□□□□□ -0.61
CCDC40-203ENST00000374877 ZNF23P17027 643 aa11.24□□□□□ -0.61
CCDC40-203ENST00000374877 TPH1P17752 444 aa11.24□□□□□ -0.61
CCDC40-203ENST00000374877 ADAM17P78536 824 aa11.24□□□□□ -0.61
CCDC40-203ENST00000374877 PKDCCQ504Y2 493 aa11.24□□□□□ -0.61
CCDC40-203ENST00000374877 GLRA4Q5JXX5 417 aa11.24□□□□□ -0.61
CCDC40-203ENST00000374877 DUS1LQ6P1R4 473 aaKnown RBP11.24□□□□□ -0.61
CCDC40-203ENST00000374877 KLHL35Q6PF15 583 aa11.24□□□□□ -0.61
CCDC40-203ENST00000374877 CYP2R1Q6VVX0 501 aa11.24□□□□□ -0.61
CCDC40-203ENST00000374877 RBM12BQ8IXT5 1001 aaKnown RBP11.24□□□□□ -0.61
CCDC40-203ENST00000374877 SLAIN1Q8ND83 568 aa11.24□□□□□ -0.61
CCDC40-203ENST00000374877 ISL2Q96A47 359 aa11.24□□□□□ -0.61
CCDC40-203ENST00000374877 PPWD1Q96BP3 646 aaKnown RBP11.24□□□□□ -0.61
CCDC40-203ENST00000374877 A0A087WZ62 844 aa11.23□□□□□ -0.61
CCDC40-203ENST00000374877 TRIM38O00635 465 aa11.23□□□□□ -0.61
CCDC40-203ENST00000374877 ADAMTS4O75173 837 aa11.23□□□□□ -0.61
CCDC40-203ENST00000374877 H6PDO95479 791 aa11.23□□□□□ -0.61
CCDC40-203ENST00000374877 MCF2P10911 925 aa11.23□□□□□ -0.61
CCDC40-203ENST00000374877 TPP2P29144 1249 aaPredicted RBP11.23□□□□□ -0.61
CCDC40-203ENST00000374877 SULT1E1P49888 294 aa11.23□□□□□ -0.61
CCDC40-203ENST00000374877 CDH15P55291 814 aa11.23□□□□□ -0.61
CCDC40-203ENST00000374877 PRAMEP78395 509 aa11.23□□□□□ -0.61
CCDC40-203ENST00000374877 RALGDSQ12967 914 aa11.23□□□□□ -0.61
CCDC40-203ENST00000374877 PDAP1Q13442 181 aaKnown RBP11.23□□□□□ -0.61
CCDC40-203ENST00000374877 USP10Q14694 798 aaKnown RBP11.23□□□□□ -0.61
CCDC40-203ENST00000374877 GRM3Q14832 879 aa11.23□□□□□ -0.61
CCDC40-203ENST00000374877 KIZQ2M2Z5 673 aa11.23□□□□□ -0.61
CCDC40-203ENST00000374877 ZYG11AQ6WRX3 759 aa11.23□□□□□ -0.61
CCDC40-203ENST00000374877 RAET1EQ8TD07 263 aa11.23□□□□□ -0.61
CCDC40-203ENST00000374877 DIS3LQ8TF46 1054 aaKnown RBP11.23□□□□□ -0.61
CCDC40-203ENST00000374877 RNF139Q8WU17 664 aa11.23□□□□□ -0.61
CCDC40-203ENST00000374877 KCTD4Q8WVF5 259 aa11.23□□□□□ -0.61
CCDC40-203ENST00000374877 NDRG1Q92597 394 aaKnown RBP11.23□□□□□ -0.61
CCDC40-203ENST00000374877 CIB1Q99828 191 aa11.23□□□□□ -0.61
CCDC40-203ENST00000374877 FDXACB1Q9BRP7 624 aaPredicted RBP11.23□□□□□ -0.61
CCDC40-203ENST00000374877 DPEP3Q9H4B8 488 aa11.23□□□□□ -0.61
CCDC40-203ENST00000374877 PDZD7Q9H5P4 517 aa11.23□□□□□ -0.61
CCDC40-203ENST00000374877 PADI4Q9UM07 663 aa11.23□□□□□ -0.61
CCDC40-203ENST00000374877 RUVBL2Q9Y230 463 aaKnown RBP11.23□□□□□ -0.61
CCDC40-203ENST00000374877 USP3Q9Y6I4 520 aa11.23□□□□□ -0.61
CCDC40-203ENST00000374877 ZCWPW2A0A1B0GU75 182 aa11.23□□□□□ -0.61
CCDC40-203ENST00000374877 TCAF2A6NFQ2 919 aa11.23□□□□□ -0.61
CCDC40-203ENST00000374877 TADA2AO75478 443 aa11.23□□□□□ -0.61
CCDC40-203ENST00000374877 PDGFRBP09619 1106 aa11.23□□□□□ -0.61
CCDC40-203ENST00000374877 SETSIPP0DME0 302 aa11.23□□□□□ -0.61
CCDC40-203ENST00000374877 STT3AP46977 705 aa11.23□□□□□ -0.61
CCDC40-203ENST00000374877 PSME3P61289 254 aa11.23□□□□□ -0.61
CCDC40-203ENST00000374877 BEX3Q00994 111 aa11.23□□□□□ -0.61
CCDC40-203ENST00000374877 IKBKEQ14164 716 aa11.23□□□□□ -0.61
CCDC40-203ENST00000374877 MTX3Q5HYI7 312 aa11.23□□□□□ -0.61
CCDC40-203ENST00000374877 SLC26A9Q7LBE3 791 aa11.23□□□□□ -0.61
CCDC40-203ENST00000374877 ERI1Q8IV48 349 aaKnown RBP11.23□□□□□ -0.61
CCDC40-203ENST00000374877 SPATA6LQ8N4H0 392 aa11.23□□□□□ -0.61
CCDC40-203ENST00000374877 CPSF7Q8N684 471 aaKnown RBP11.23□□□□□ -0.61
CCDC40-203ENST00000374877 KLHDC9Q8NEP7 349 aa11.23□□□□□ -0.61
CCDC40-203ENST00000374877 IRGQQ8WZA9 623 aa11.23□□□□□ -0.61
CCDC40-203ENST00000374877 RMND5BQ96G75 393 aaPredicted RBP11.23□□□□□ -0.61
CCDC40-203ENST00000374877 PLEKHG4BQ96PX9 1271 aa11.23□□□□□ -0.61
CCDC40-203ENST00000374877 CHRAC1Q9NRG0 131 aa11.23□□□□□ -0.61
CCDC40-203ENST00000374877 SETD4Q9NVD3 440 aa11.23□□□□□ -0.61
CCDC40-203ENST00000374877 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP11.23□□□□□ -0.61
CCDC40-203ENST00000374877 MYRFQ9Y2G1 1151 aa11.23□□□□□ -0.61
CCDC40-203ENST00000374877 TDRKHQ9Y2W6 561 aaKnown RBP11.23□□□□□ -0.61
CCDC40-203ENST00000374877 PPEF2O14830 753 aa11.23□□□□□ -0.61
CCDC40-203ENST00000374877 ATP6V1G1O75348 118 aa11.23□□□□□ -0.61
CCDC40-203ENST00000374877 CLCN2P51788 898 aa11.23□□□□□ -0.61
CCDC40-203ENST00000374877 TRIM32Q13049 653 aa11.23□□□□□ -0.61
CCDC40-203ENST00000374877 SMYD5Q6GMV2 418 aa11.23□□□□□ -0.61
CCDC40-203ENST00000374877 POTEHQ6S545 545 aa11.23□□□□□ -0.61
CCDC40-203ENST00000374877 ZDHHC17Q8IUH5 632 aa11.23□□□□□ -0.61
CCDC40-203ENST00000374877 TTC39CQ8N584 583 aa11.23□□□□□ -0.61
CCDC40-203ENST00000374877 SGF29Q96ES7 293 aa11.23□□□□□ -0.61
CCDC40-203ENST00000374877 OMDQ99983 421 aa11.23□□□□□ -0.61
CCDC40-203ENST00000374877 RNF19AQ9NV58 838 aa11.23□□□□□ -0.61
CCDC40-203ENST00000374877 E7ENX8 843 aa11.22□□□□□ -0.61
CCDC40-203ENST00000374877 ELNP15502 786 aa11.22□□□□□ -0.61
CCDC40-203ENST00000374877 CDK9P50750 372 aaKnown RBP11.22□□□□□ -0.61
CCDC40-203ENST00000374877 PITX1P78337 314 aaPredicted RBP11.22□□□□□ -0.61
CCDC40-203ENST00000374877 HERC3Q15034 1050 aa11.22□□□□□ -0.61
CCDC40-203ENST00000374877 PCBP1Q15365 356 aaKnown RBP eCLIP11.22□□□□□ -0.61
CCDC40-203ENST00000374877 LAYNQ6UX15 382 aa11.22□□□□□ -0.61
CCDC40-203ENST00000374877 ALDH16A1Q8IZ83 802 aa11.22□□□□□ -0.61
CCDC40-203ENST00000374877 CNTD1Q8N815 330 aa11.22□□□□□ -0.61
CCDC40-203ENST00000374877 ZNF296Q8WUU4 475 aaPredicted RBP11.22□□□□□ -0.61
CCDC40-203ENST00000374877 CENPIQ92674 756 aaPredicted RBP11.22□□□□□ -0.61
CCDC40-203ENST00000374877 ASB9Q96DX5 294 aa11.22□□□□□ -0.61
CCDC40-203ENST00000374877 SLC29A1Q99808 456 aa11.22□□□□□ -0.61
CCDC40-203ENST00000374877 OSBPL11Q9BXB4 747 aa11.22□□□□□ -0.61
CCDC40-203ENST00000374877 ZNF385DQ9H6B1 395 aa11.22□□□□□ -0.61
CCDC40-203ENST00000374877 RRN3Q9NYV6 651 aa11.22□□□□□ -0.61
CCDC40-203ENST00000374877 GTSE1Q9NYZ3 720 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms