RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 ZP2Q05996 745 aa14.53□□□□□ -0.08
HMGA1-203ENST00000374116 SF3A3Q12874 501 aaKnown RBP eCLIP14.53□□□□□ -0.08
HMGA1-203ENST00000374116 GRM2Q14416 872 aa14.53□□□□□ -0.08
HMGA1-203ENST00000374116 SNX30Q5VWJ9 437 aa14.53□□□□□ -0.08
HMGA1-203ENST00000374116 LRRC39Q96DD0 335 aa14.53□□□□□ -0.08
HMGA1-203ENST00000374116 SMOC2Q9H3U7 446 aa14.53□□□□□ -0.08
HMGA1-203ENST00000374116 POPDC2Q9HBU9 364 aa14.53□□□□□ -0.08
HMGA1-203ENST00000374116 GDE1Q9NZC3 331 aa14.53□□□□□ -0.08
HMGA1-203ENST00000374116 KLHL14Q9P2G3 628 aa14.53□□□□□ -0.08
HMGA1-203ENST00000374116 FAM50BQ9Y247 325 aa14.53□□□□□ -0.08
HMGA1-203ENST00000374116 LRCH1Q9Y2L9 728 aa14.53□□□□□ -0.08
HMGA1-203ENST00000374116 NUMBLQ9Y6R0 609 aa14.53□□□□□ -0.08
HMGA1-203ENST00000374116 TCRBV9S1A1TA0A576 114 aa14.52□□□□□ -0.08
HMGA1-203ENST00000374116 TRAFD1O14545 582 aaPredicted RBP14.52□□□□□ -0.08
HMGA1-203ENST00000374116 TM9SF1O15321 606 aa14.52□□□□□ -0.08
HMGA1-203ENST00000374116 PENKP01210 267 aaPredicted RBP14.52□□□□□ -0.08
HMGA1-203ENST00000374116 ATP5C1P36542 298 aaKnown RBP14.52□□□□□ -0.08
HMGA1-203ENST00000374116 PPP3CCP48454 512 aa14.52□□□□□ -0.08
HMGA1-203ENST00000374116 SULT1E1P49888 294 aa14.52□□□□□ -0.08
HMGA1-203ENST00000374116 SLC1A5Q15758 541 aa14.52□□□□□ -0.08
HMGA1-203ENST00000374116 CGB2Q6NT52 195 aa14.52□□□□□ -0.08
HMGA1-203ENST00000374116 ADHFE1Q8IWW8 467 aa14.52□□□□□ -0.08
HMGA1-203ENST00000374116 SCML4Q8N228 414 aa14.52□□□□□ -0.08
HMGA1-203ENST00000374116 LRRC8CQ8TDW0 803 aa14.52□□□□□ -0.08
HMGA1-203ENST00000374116 RNF139Q8WU17 664 aa14.52□□□□□ -0.08
HMGA1-203ENST00000374116 SLC44A1Q8WWI5 657 aa14.52□□□□□ -0.08
HMGA1-203ENST00000374116 DNAJC9Q8WXX5 260 aa14.52□□□□□ -0.08
HMGA1-203ENST00000374116 IRGQQ8WZA9 623 aa14.52□□□□□ -0.08
HMGA1-203ENST00000374116 NCSTNQ92542 709 aa14.52□□□□□ -0.08
HMGA1-203ENST00000374116 SMARCD2Q92925 531 aa14.52□□□□□ -0.08
HMGA1-203ENST00000374116 AZIN2Q96A70 460 aa14.52□□□□□ -0.08
HMGA1-203ENST00000374116 ZFYVE19Q96K21 471 aa14.52□□□□□ -0.08
HMGA1-203ENST00000374116 QKIQ96PU8 341 aaKnown RBP eCLIP14.52□□□□□ -0.08
HMGA1-203ENST00000374116 ETNK1Q9HBU6 452 aa14.52□□□□□ -0.08
HMGA1-203ENST00000374116 ABCC13Q9NSE7 274 aa14.52□□□□□ -0.08
HMGA1-203ENST00000374116 TDP1Q9NUW8 608 aa14.52□□□□□ -0.08
HMGA1-203ENST00000374116 HACD1B0YJ81 288 aa14.52□□□□□ -0.09
HMGA1-203ENST00000374116 TRDMT1O14717 391 aaKnown RBP14.52□□□□□ -0.09
HMGA1-203ENST00000374116 MAP3K13O43283 966 aa14.52□□□□□ -0.09
HMGA1-203ENST00000374116 TPSB2P20231 275 aa14.52□□□□□ -0.09
HMGA1-203ENST00000374116 ARL4AP40617 200 aa14.52□□□□□ -0.09
HMGA1-203ENST00000374116 GBE1Q04446 702 aa14.52□□□□□ -0.09
HMGA1-203ENST00000374116 TPSAB1Q15661 275 aa14.52□□□□□ -0.09
HMGA1-203ENST00000374116 LRRC23Q53EV4 343 aaPredicted RBP14.52□□□□□ -0.09
HMGA1-203ENST00000374116 TMEM154Q6P9G4 183 aa14.52□□□□□ -0.09
HMGA1-203ENST00000374116 FAM131BQ86XD5 332 aa14.52□□□□□ -0.09
HMGA1-203ENST00000374116 BANPQ8N9N5 519 aa14.52□□□□□ -0.09
HMGA1-203ENST00000374116 KCNV2Q8TDN2 545 aa14.52□□□□□ -0.09
HMGA1-203ENST00000374116 PGAP3Q96FM1 320 aaPredicted RBP14.52□□□□□ -0.09
HMGA1-203ENST00000374116 ZFRQ96KR1 1074 aaKnown RBP14.52□□□□□ -0.09
HMGA1-203ENST00000374116 OLFM3Q96PB7 478 aa14.52□□□□□ -0.09
HMGA1-203ENST00000374116 KCNK12Q9HB15 430 aa14.52□□□□□ -0.09
HMGA1-203ENST00000374116 CLIC5Q9NZA1 410 aa14.52□□□□□ -0.09
HMGA1-203ENST00000374116 EPS15L1Q9UBC2 864 aa14.52□□□□□ -0.09
HMGA1-203ENST00000374116 HELZP42694 1942 aaKnown RBP14.51□□□□□ -0.09
HMGA1-203ENST00000374116 SLC12A8A0AV02 714 aa14.51□□□□□ -0.09
HMGA1-203ENST00000374116 HEPACAM2A8MVW5 462 aa14.51□□□□□ -0.09
HMGA1-203ENST00000374116 LOC730098B7Z3J9 87 aa14.51□□□□□ -0.09
HMGA1-203ENST00000374116 AVILO75366 819 aa14.51□□□□□ -0.09
HMGA1-203ENST00000374116 OLFM2O95897 454 aa14.51□□□□□ -0.09
HMGA1-203ENST00000374116 MT-ND3P03897 115 aa14.51□□□□□ -0.09
HMGA1-203ENST00000374116 PYGLP06737 847 aa14.51□□□□□ -0.09
HMGA1-203ENST00000374116 APRTP07741 180 aa14.51□□□□□ -0.09
HMGA1-203ENST00000374116 INHBAP08476 426 aa14.51□□□□□ -0.09
HMGA1-203ENST00000374116 SH3BGRP55822 239 aaPredicted RBP14.51□□□□□ -0.09
HMGA1-203ENST00000374116 OCRLQ01968 901 aa14.51□□□□□ -0.09
HMGA1-203ENST00000374116 MTM1Q13496 603 aa14.51□□□□□ -0.09
HMGA1-203ENST00000374116 SEPT7Q16181 437 aaKnown RBP14.51□□□□□ -0.09
HMGA1-203ENST00000374116 KBTBD12Q3ZCT8 623 aa14.51□□□□□ -0.09
HMGA1-203ENST00000374116 NCBP2-AS2Q69YL0 99 aa14.51□□□□□ -0.09
HMGA1-203ENST00000374116 TRIM68Q6AZZ1 485 aa14.51□□□□□ -0.09
HMGA1-203ENST00000374116 LVRNQ6Q4G3 990 aa14.51□□□□□ -0.09
HMGA1-203ENST00000374116 VITQ6UXI7 678 aa14.51□□□□□ -0.09
HMGA1-203ENST00000374116 TAC4Q86UU9 113 aa14.51□□□□□ -0.09
HMGA1-203ENST00000374116 CAND1Q86VP6 1230 aaKnown RBP14.51□□□□□ -0.09
HMGA1-203ENST00000374116 PYROXD2Q8N2H3 581 aa14.51□□□□□ -0.09
HMGA1-203ENST00000374116 ARHGAP18Q8N392 663 aa14.51□□□□□ -0.09
HMGA1-203ENST00000374116 CCDC110Q8TBZ0 833 aa14.51□□□□□ -0.09
HMGA1-203ENST00000374116 ADAMTS19Q8TE59 1207 aa14.51□□□□□ -0.09
HMGA1-203ENST00000374116 SH3RF2Q8TEC5 729 aa14.51□□□□□ -0.09
HMGA1-203ENST00000374116 ZFP14Q9HCL3 533 aa14.51□□□□□ -0.09
HMGA1-203ENST00000374116 MARCH2Q9P0N8 246 aa14.51□□□□□ -0.09
HMGA1-203ENST00000374116 DNMT3LQ9UJW3 386 aa14.51□□□□□ -0.09
HMGA1-203ENST00000374116 GRID1Q9ULK0 1009 aa14.51□□□□□ -0.09
HMGA1-203ENST00000374116 STAP1Q9ULZ2 295 aa14.51□□□□□ -0.09
HMGA1-203ENST00000374116 PHTF1Q9UMS5 762 aa14.51□□□□□ -0.09
HMGA1-203ENST00000374116 NUP210Q8TEM1 1887 aaPredicted RBP14.51□□□□□ -0.09
HMGA1-203ENST00000374116 LEFTY2O00292 366 aa14.5□□□□□ -0.09
HMGA1-203ENST00000374116 GOT1P17174 413 aa14.5□□□□□ -0.09
HMGA1-203ENST00000374116 DDX6P26196 483 aaKnown RBP eCLIP14.5□□□□□ -0.092e-10■□□□□ 8.7
HMGA1-203ENST00000374116 AIF1P55008 147 aa14.5□□□□□ -0.09
HMGA1-203ENST00000374116 SCAPQ12770 1279 aa14.5□□□□□ -0.09
HMGA1-203ENST00000374116 DNAJC3Q13217 504 aa14.5□□□□□ -0.09
HMGA1-203ENST00000374116 NME3Q13232 169 aa14.5□□□□□ -0.09
HMGA1-203ENST00000374116 HTR4Q13639 388 aa14.5□□□□□ -0.09
HMGA1-203ENST00000374116 SYCP2LQ5T4T6 812 aa14.5□□□□□ -0.09
HMGA1-203ENST00000374116 HEATR6Q6AI08 1181 aaKnown RBP14.5□□□□□ -0.09
HMGA1-203ENST00000374116 TRIM74Q86UV6 250 aa14.5□□□□□ -0.09
HMGA1-203ENST00000374116 TRIM73Q86UV7 250 aa14.5□□□□□ -0.09
HMGA1-203ENST00000374116 DQX1Q8TE96 717 aaKnown RBP14.5□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms