RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 ERI2A8K979 691 aaKnown RBP16.58■□□□□ 0.25
SDC4-201ENST00000372733 PLOD2O00469 737 aa16.58■□□□□ 0.25
SDC4-201ENST00000372733 NRP1O14786 923 aa16.58■□□□□ 0.25
SDC4-201ENST00000372733 IRF6O14896 467 aa16.58■□□□□ 0.25
SDC4-201ENST00000372733 JCHAINP01591 159 aa16.58■□□□□ 0.25
SDC4-201ENST00000372733 ZNF23P17027 643 aa16.58■□□□□ 0.25
SDC4-201ENST00000372733 HADHAP40939 763 aa16.58■□□□□ 0.25
SDC4-201ENST00000372733 COG7P83436 770 aa16.58■□□□□ 0.25
SDC4-201ENST00000372733 TRIM25Q14258 630 aaKnown RBP16.58■□□□□ 0.25
SDC4-201ENST00000372733 ZNF280DQ6N043 979 aa16.58■□□□□ 0.25
SDC4-201ENST00000372733 RPS27LQ71UM5 84 aaKnown RBP16.58■□□□□ 0.25
SDC4-201ENST00000372733 OTOP3Q7RTS5 596 aa16.58■□□□□ 0.25
SDC4-201ENST00000372733 CARM1Q86X55 608 aa16.58■□□□□ 0.25
SDC4-201ENST00000372733 TRIML2Q8N7C3 387 aa16.58■□□□□ 0.25
SDC4-201ENST00000372733 LPGAT1Q92604 370 aa16.58■□□□□ 0.25
SDC4-201ENST00000372733 SLCO4A1Q96BD0 722 aa16.58■□□□□ 0.25
SDC4-201ENST00000372733 CIB1Q99828 191 aa16.58■□□□□ 0.25
SDC4-201ENST00000372733 FTHL17Q9BXU8 183 aa16.58■□□□□ 0.25
SDC4-201ENST00000372733 POMKQ9H5K3 350 aa16.58■□□□□ 0.25
SDC4-201ENST00000372733 RSL24D1Q9UHA3 163 aaKnown RBP16.58■□□□□ 0.25
SDC4-201ENST00000372733 CNOT11Q9UKZ1 510 aaKnown RBP16.58■□□□□ 0.25
SDC4-201ENST00000372733 ACOT9Q9Y305 439 aa16.58■□□□□ 0.25
SDC4-201ENST00000372733 HSPA1AP0DMV8 641 aaKnown RBP16.58■□□□□ 0.24
SDC4-201ENST00000372733 HSPA1BP0DMV9 641 aaKnown RBP16.58■□□□□ 0.24
SDC4-201ENST00000372733 EPHX2P34913 555 aa16.58■□□□□ 0.24
SDC4-201ENST00000372733 TXNL4AP83876 142 aaKnown RBP16.58■□□□□ 0.24
SDC4-201ENST00000372733 SEMA3BQ13214 749 aa16.58■□□□□ 0.24
SDC4-201ENST00000372733 DCTN2Q13561 401 aaKnown RBP16.58■□□□□ 0.24
SDC4-201ENST00000372733 REP15Q6BDI9 236 aa16.58■□□□□ 0.24
SDC4-201ENST00000372733 PDZD4Q76G19 769 aaPredicted RBP16.58■□□□□ 0.24
SDC4-201ENST00000372733 SIX6OS1Q8N1H7 587 aa16.58■□□□□ 0.24
SDC4-201ENST00000372733 PELI3Q8N2H9 469 aa16.58■□□□□ 0.24
SDC4-201ENST00000372733 B3GALNT2Q8NCR0 500 aa16.58■□□□□ 0.24
SDC4-201ENST00000372733 CELF6Q96J87 481 aaKnown RBP16.58■□□□□ 0.24
SDC4-201ENST00000372733 MAELQ96JY0 434 aaKnown RBP16.58■□□□□ 0.24
SDC4-201ENST00000372733 TMEM79Q9BSE2 394 aa16.58■□□□□ 0.24
SDC4-201ENST00000372733 HAUS8Q9BT25 410 aa16.58■□□□□ 0.24
SDC4-201ENST00000372733 LRRC4Q9HBW1 653 aa16.58■□□□□ 0.24
SDC4-201ENST00000372733 TNFRSF12AQ9NP84 129 aa16.58■□□□□ 0.24
SDC4-201ENST00000372733 CACNA2D2Q9NY47 1150 aa16.58■□□□□ 0.24
SDC4-201ENST00000372733 GTF3C5Q9Y5Q8 519 aaPredicted RBP16.58■□□□□ 0.24
SDC4-201ENST00000372733 TLL2Q9Y6L7 1015 aa16.58■□□□□ 0.24
SDC4-201ENST00000372733 SBF1O95248 1867 aa16.57■□□□□ 0.24
SDC4-201ENST00000372733 FAM95CA0A1B0GW59 222 aa16.57■□□□□ 0.24
SDC4-201ENST00000372733 MAGEB16A2A368 324 aa16.57■□□□□ 0.24
SDC4-201ENST00000372733 PRORSD1PA6NEY8 169 aa16.57■□□□□ 0.24
SDC4-201ENST00000372733 FBP2O00757 339 aa16.57■□□□□ 0.24
SDC4-201ENST00000372733 FYNP06241 537 aa16.57■□□□□ 0.24
SDC4-201ENST00000372733 RAB10P61026 200 aa16.57■□□□□ 0.24
SDC4-201ENST00000372733 SULT2A1Q06520 285 aa16.57■□□□□ 0.24
SDC4-201ENST00000372733 CDH17Q12864 832 aa16.57■□□□□ 0.24
SDC4-201ENST00000372733 POU6F1Q14863 301 aa16.57■□□□□ 0.24
SDC4-201ENST00000372733 PPP1R3AQ16821 1122 aa16.57■□□□□ 0.24
SDC4-201ENST00000372733 ITPRIPL1Q6GPH6 555 aa16.57■□□□□ 0.24
SDC4-201ENST00000372733 LAYNQ6UX15 382 aa16.57■□□□□ 0.24
SDC4-201ENST00000372733 HERC6Q8IVU3 1022 aa16.57■□□□□ 0.24
SDC4-201ENST00000372733 APPL2Q8NEU8 664 aa16.57■□□□□ 0.24
SDC4-201ENST00000372733 PPP1R13LQ8WUF5 828 aa16.57■□□□□ 0.24
SDC4-201ENST00000372733 STON2Q8WXE9 905 aa16.57■□□□□ 0.24
SDC4-201ENST00000372733 ITFG2Q969R8 447 aa16.57■□□□□ 0.24
SDC4-201ENST00000372733 SLC2A13Q96QE2 648 aa16.57■□□□□ 0.24
SDC4-201ENST00000372733 CYP4F12Q9HCS2 524 aa16.57■□□□□ 0.24
SDC4-201ENST00000372733 WDR6Q9NNW5 1121 aaKnown RBP16.57■□□□□ 0.24
SDC4-201ENST00000372733 THEGQ9P2T0 379 aa16.57■□□□□ 0.24
SDC4-201ENST00000372733 GMPR2Q9P2T1 348 aaKnown RBP16.57■□□□□ 0.24
SDC4-201ENST00000372733 H6PDO95479 791 aa16.57■□□□□ 0.24
SDC4-201ENST00000372733 RPL10P27635 214 aaKnown RBP16.57■□□□□ 0.24
SDC4-201ENST00000372733 ADARP55265 1226 aaKnown RBP16.57■□□□□ 0.24
SDC4-201ENST00000372733 CDH15P55291 814 aa16.57■□□□□ 0.24
SDC4-201ENST00000372733 LAMC2Q13753 1193 aa16.57■□□□□ 0.24
SDC4-201ENST00000372733 ADRM1Q16186 407 aa16.57■□□□□ 0.24
SDC4-201ENST00000372733 SLC27A1Q6PCB7 646 aa16.57■□□□□ 0.24
SDC4-201ENST00000372733 MAMDC4Q6UXC1 1216 aa16.57■□□□□ 0.24
SDC4-201ENST00000372733 LPCAT2Q7L5N7 544 aa16.57■□□□□ 0.24
SDC4-201ENST00000372733 CATSPER4Q7RTX7 472 aa16.57■□□□□ 0.24
SDC4-201ENST00000372733 SPATA22Q8NHS9 363 aa16.57■□□□□ 0.24
SDC4-201ENST00000372733 FAM110BQ8TC76 370 aa16.57■□□□□ 0.24
SDC4-201ENST00000372733 DUSP16Q9BY84 665 aa16.57■□□□□ 0.24
SDC4-201ENST00000372733 FAM49AQ9H0Q0 323 aaPredicted RBP16.57■□□□□ 0.24
SDC4-201ENST00000372733 UNC93B1Q9H1C4 597 aa16.57■□□□□ 0.24
SDC4-201ENST00000372733 UTP6Q9NYH9 597 aaKnown RBP16.57■□□□□ 0.24
SDC4-201ENST00000372733 CCDC167Q9P0B6 97 aa16.57■□□□□ 0.24
SDC4-201ENST00000372733 CNOT6Q9ULM6 557 aaKnown RBP16.57■□□□□ 0.24
SDC4-201ENST00000372733 RALGAPA2Q2PPJ7 1873 aa16.57■□□□□ 0.24
SDC4-201ENST00000372733 NUP205Q92621 2012 aa16.56■□□□□ 0.24
SDC4-201ENST00000372733 HEATR9A2RTY3 570 aa16.56■□□□□ 0.24
SDC4-201ENST00000372733 TRPC5OSA6NMA1 111 aa16.56■□□□□ 0.24
SDC4-201ENST00000372733 NPR3P17342 541 aa16.56■□□□□ 0.24
SDC4-201ENST00000372733 NDST2P52849 883 aa16.56■□□□□ 0.24
SDC4-201ENST00000372733 RHDQ02161 417 aa16.56■□□□□ 0.24
SDC4-201ENST00000372733 TMED1Q13445 227 aa16.56■□□□□ 0.24
SDC4-201ENST00000372733 LPIN1Q14693 890 aa16.56■□□□□ 0.24
SDC4-201ENST00000372733 AGKQ53H12 422 aa16.56■□□□□ 0.24
SDC4-201ENST00000372733 KRT80Q6KB66 452 aa16.56■□□□□ 0.24
SDC4-201ENST00000372733 HMBOX1Q6NT76 420 aa16.56■□□□□ 0.24
SDC4-201ENST00000372733 TRIM67Q6ZTA4 783 aa16.56■□□□□ 0.24
SDC4-201ENST00000372733 ALDH16A1Q8IZ83 802 aa16.56■□□□□ 0.24
SDC4-201ENST00000372733 ABTB1Q969K4 478 aaPredicted RBP16.56■□□□□ 0.24
SDC4-201ENST00000372733 HDAC11Q96DB2 347 aa16.56■□□□□ 0.24
SDC4-201ENST00000372733 OTUD5Q96G74 571 aa16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms