RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 SLC1A5Q15758 541 aa13.97□□□□□ -0.17
PTPRF-202ENST00000372405 POTEHQ6S545 545 aa13.97□□□□□ -0.17
PTPRF-202ENST00000372405 PACS1Q6VY07 963 aa13.97□□□□□ -0.17
PTPRF-202ENST00000372405 CCDC117Q8IWD4 279 aaPredicted RBP13.97□□□□□ -0.17
PTPRF-202ENST00000372405 CARNMT1Q8N4J0 409 aa13.97□□□□□ -0.17
PTPRF-202ENST00000372405 SLC25A41Q8N5S1 370 aa13.97□□□□□ -0.17
PTPRF-202ENST00000372405 HJURPQ8NCD3 748 aaPredicted RBP13.97□□□□□ -0.17
PTPRF-202ENST00000372405 GDAP1Q8TB36 358 aa13.97□□□□□ -0.17
PTPRF-202ENST00000372405 BHMTQ93088 406 aa13.97□□□□□ -0.17
PTPRF-202ENST00000372405 AGAP2Q99490 1192 aa13.97□□□□□ -0.17
PTPRF-202ENST00000372405 MGME1Q9BQP7 344 aa13.97□□□□□ -0.17
PTPRF-202ENST00000372405 POLR1EQ9GZS1 481 aaKnown RBP13.97□□□□□ -0.17
PTPRF-202ENST00000372405 SMG5Q9UPR3 1016 aaKnown RBP13.97□□□□□ -0.17
PTPRF-202ENST00000372405 YBX2Q9Y2T7 364 aaKnown RBP13.97□□□□□ -0.17
PTPRF-202ENST00000372405 ANKRD36A6QL64 1941 aa13.96□□□□□ -0.17
PTPRF-202ENST00000372405 SNAP91O60641 907 aa13.96□□□□□ -0.17
PTPRF-202ENST00000372405 ZMPSTE24O75844 475 aa13.96□□□□□ -0.17
PTPRF-202ENST00000372405 LUC7L3O95232 432 aaKnown RBP13.96□□□□□ -0.17
PTPRF-202ENST00000372405 RHOP08100 348 aa13.96□□□□□ -0.17
PTPRF-202ENST00000372405 PYGBP11216 843 aa13.96□□□□□ -0.17
PTPRF-202ENST00000372405 CA4P22748 312 aa13.96□□□□□ -0.17
PTPRF-202ENST00000372405 NTHL1P78549 312 aa13.96□□□□□ -0.17
PTPRF-202ENST00000372405 ZNF235Q14590 738 aa13.96□□□□□ -0.17
PTPRF-202ENST00000372405 TEAD2Q15562 447 aa13.96□□□□□ -0.17
PTPRF-202ENST00000372405 QPCTQ16769 361 aa13.96□□□□□ -0.17
PTPRF-202ENST00000372405 PCID2Q5JVF3 399 aa13.96□□□□□ -0.17
PTPRF-202ENST00000372405 MROH9Q5TGP6 573 aa13.96□□□□□ -0.17
PTPRF-202ENST00000372405 PKN3Q6P5Z2 889 aa13.96□□□□□ -0.17
PTPRF-202ENST00000372405 ZNF449Q6P9G9 518 aa13.96□□□□□ -0.17
PTPRF-202ENST00000372405 MICALCLQ6ZW33 695 aa13.96□□□□□ -0.17
PTPRF-202ENST00000372405 RASSF3Q86WH2 238 aa13.96□□□□□ -0.17
PTPRF-202ENST00000372405 CKAP2Q8WWK9 683 aa13.96□□□□□ -0.17
PTPRF-202ENST00000372405 TMA16Q96EY4 203 aaKnown RBP13.96□□□□□ -0.17
PTPRF-202ENST00000372405 ALG14Q96F25 216 aa13.96□□□□□ -0.17
PTPRF-202ENST00000372405 GCNAQ96QF7 691 aa13.96□□□□□ -0.17
PTPRF-202ENST00000372405 MUC3BQ9H195 1237 aa13.96□□□□□ -0.17
PTPRF-202ENST00000372405 NKIRAS1Q9NYS0 192 aa13.96□□□□□ -0.17
PTPRF-202ENST00000372405 UBA2Q9UBT2 640 aaPredicted RBP13.96□□□□□ -0.17
PTPRF-202ENST00000372405 CLEC4EQ9ULY5 219 aa13.96□□□□□ -0.17
PTPRF-202ENST00000372405 REV3LO60673 3130 aa13.96□□□□□ -0.17
PTPRF-202ENST00000372405 LOC285095A0A1B0GVY8 99 aa13.96□□□□□ -0.18
PTPRF-202ENST00000372405 H0Y626 953 aa13.96□□□□□ -0.18
PTPRF-202ENST00000372405 CBX4O00257 560 aa13.96□□□□□ -0.18
PTPRF-202ENST00000372405 KRT37O76014 449 aa13.96□□□□□ -0.18
PTPRF-202ENST00000372405 FAM107AO95990 144 aa13.96□□□□□ -0.18
PTPRF-202ENST00000372405 ATXN1LP0C7T5 689 aaKnown RBP13.96□□□□□ -0.18
PTPRF-202ENST00000372405 PTPN2P17706 415 aa13.96□□□□□ -0.18
PTPRF-202ENST00000372405 DRD4P21917 467 aa13.96□□□□□ -0.18
PTPRF-202ENST00000372405 PBX2P40425 430 aa13.96□□□□□ -0.18
PTPRF-202ENST00000372405 MAGEA10P43363 369 aaPredicted RBP13.96□□□□□ -0.18
PTPRF-202ENST00000372405 CYTH1Q15438 398 aa13.96□□□□□ -0.18
PTPRF-202ENST00000372405 ZSCAN26Q16670 478 aa13.96□□□□□ -0.18
PTPRF-202ENST00000372405 GPR158Q5T848 1215 aa13.96□□□□□ -0.18
PTPRF-202ENST00000372405 ZNF697Q5TEC3 545 aa13.96□□□□□ -0.18
PTPRF-202ENST00000372405 RTL10Q7L3V2 364 aa13.96□□□□□ -0.18
PTPRF-202ENST00000372405 CDKL2Q92772 493 aa13.96□□□□□ -0.18
PTPRF-202ENST00000372405 SGSM3Q96HU1 749 aa13.96□□□□□ -0.18
PTPRF-202ENST00000372405 PSKH2Q96QS6 385 aa13.96□□□□□ -0.18
PTPRF-202ENST00000372405 FEM1AQ9BSK4 669 aa13.96□□□□□ -0.18
PTPRF-202ENST00000372405 FAM107BQ9H098 131 aa13.96□□□□□ -0.18
PTPRF-202ENST00000372405 ZFATQ9P243 1243 aa13.96□□□□□ -0.18
PTPRF-202ENST00000372405 SLC2A6Q9UGQ3 507 aa13.96□□□□□ -0.18
PTPRF-202ENST00000372405 LSM7Q9UK45 103 aaKnown RBP13.96□□□□□ -0.18
PTPRF-202ENST00000372405 ARHGAP26Q9UNA1 814 aa13.96□□□□□ -0.18
PTPRF-202ENST00000372405 SH3BP1Q9Y3L3 701 aa13.96□□□□□ -0.18
PTPRF-202ENST00000372405 TCAF1Q9Y4C2 921 aa13.96□□□□□ -0.18
PTPRF-202ENST00000372405 GOLGA8TH3BQL2 631 aa13.95□□□□□ -0.18
PTPRF-202ENST00000372405 NDUFAB1O14561 156 aa13.95□□□□□ -0.18
PTPRF-202ENST00000372405 LPXNO60711 386 aa13.95□□□□□ -0.18
PTPRF-202ENST00000372405 KRT38O76015 456 aa13.95□□□□□ -0.18
PTPRF-202ENST00000372405 PFKLP17858 780 aa13.95□□□□□ -0.18
PTPRF-202ENST00000372405 CR2P20023 1033 aa13.95□□□□□ -0.18
PTPRF-202ENST00000372405 ARNTP27540 789 aa13.95□□□□□ -0.18
PTPRF-202ENST00000372405 HOXA9P31269 272 aa13.95□□□□□ -0.18
PTPRF-202ENST00000372405 FOXN2P32314 431 aa13.95□□□□□ -0.18
PTPRF-202ENST00000372405 NEK3P51956 506 aa13.95□□□□□ -0.18
PTPRF-202ENST00000372405 ERVK-21P61565 698 aa13.95□□□□□ -0.18
PTPRF-202ENST00000372405 NAB1Q13506 487 aa13.95□□□□□ -0.18
PTPRF-202ENST00000372405 HSP90AA5PQ58FG0 334 aa13.95□□□□□ -0.18
PTPRF-202ENST00000372405 SIRPB2Q5JXA9 342 aa13.95□□□□□ -0.18
PTPRF-202ENST00000372405 TEDDM1Q5T9Z0 273 aa13.95□□□□□ -0.18
PTPRF-202ENST00000372405 ESRP1Q6NXG1 681 aaKnown RBP13.95□□□□□ -0.18
PTPRF-202ENST00000372405 LINGO4Q6UY18 593 aa13.95□□□□□ -0.18
PTPRF-202ENST00000372405 ZNF783Q6ZMS7 281 aa13.95□□□□□ -0.18
PTPRF-202ENST00000372405 CDHR3Q6ZTQ4 885 aa13.95□□□□□ -0.18
PTPRF-202ENST00000372405 ADGRD2Q7Z7M1 963 aa13.95□□□□□ -0.18
PTPRF-202ENST00000372405 KCNMB4Q86W47 210 aa13.95□□□□□ -0.18
PTPRF-202ENST00000372405 CMTM8Q8IZV2 173 aa13.95□□□□□ -0.18
PTPRF-202ENST00000372405 CPXM2Q8N436 756 aa13.95□□□□□ -0.18
PTPRF-202ENST00000372405 TDRD5Q8NAT2 981 aaKnown RBP13.95□□□□□ -0.18
PTPRF-202ENST00000372405 TCP10LQ8TDR4 215 aa13.95□□□□□ -0.18
PTPRF-202ENST00000372405 ZNF473Q8WTR7 871 aaKnown RBP13.95□□□□□ -0.18
PTPRF-202ENST00000372405 CHMP6Q96FZ7 201 aa13.95□□□□□ -0.18
PTPRF-202ENST00000372405 EXOC2Q96KP1 924 aa13.95□□□□□ -0.18
PTPRF-202ENST00000372405 TGS1Q96RS0 853 aaKnown RBP13.95□□□□□ -0.18
PTPRF-202ENST00000372405 MCMBPQ9BTE3 642 aa13.95□□□□□ -0.18
PTPRF-202ENST00000372405 ZMYND15Q9H091 742 aa13.95□□□□□ -0.18
PTPRF-202ENST00000372405 NOD2Q9HC29 1040 aa13.95□□□□□ -0.18
PTPRF-202ENST00000372405 TREX1Q9NSU2 369 aa13.95□□□□□ -0.18
PTPRF-202ENST00000372405 PLK2Q9NYY3 685 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms