RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 CLCN7P51798 805 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 TMPRSS3P57727 454 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 PSMC6P62333 389 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 HTRA3P83110 453 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 ECH1Q13011 328 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 MTF1Q14872 753 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 SEC23AQ15436 765 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 DCST1Q5T197 706 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 LRRC74BQ6ZQY2 392 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 GPR155Q7Z3F1 870 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 TMC6Q7Z403 805 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 HDDC2Q7Z4H3 204 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 ZNF227Q86WZ6 799 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 SH2D3CQ8N5H7 860 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 MEIOBQ8N635 442 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 SLC22A8Q8TCC7 542 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 ADAD1Q96M93 576 aaKnown RBP4.14□□□□□ -1.75
USH2A-202ENST00000366942 ZSWIM3Q96MP5 696 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 PELOQ9BRX2 385 aaKnown RBP4.14□□□□□ -1.75
USH2A-202ENST00000366942 WDR83Q9BRX9 315 aaKnown RBP4.14□□□□□ -1.75
USH2A-202ENST00000366942 ELAC1Q9H777 363 aaKnown RBP4.14□□□□□ -1.75
USH2A-202ENST00000366942 SLC39A1Q9NY26 324 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 TAB2Q9NYJ8 693 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 ARHGAP20Q9P2F6 1191 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 CDC23Q9UJX2 597 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 L3MBTL1Q9Y468 752 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 PCDHGA5Q9Y5G8 931 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 COL5A2P05997 1499 aaPredicted RBP4.14□□□□□ -1.75
USH2A-202ENST00000366942 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP4.14□□□□□ -1.75
USH2A-202ENST00000366942 GABRR3A8MPY1 467 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 H3BNC9 293 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 PIK3R2O00459 728 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 FGF10O15520 208 aaPredicted RBP4.14□□□□□ -1.75
USH2A-202ENST00000366942 SOD2P04179 222 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 HEXBP07686 556 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 IFNGR2P38484 337 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 HSPA13P48723 471 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 RAB15P59190 212 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 SRP54P61011 504 aaKnown RBP4.14□□□□□ -1.75
USH2A-202ENST00000366942 DSC3Q14574 896 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 MAPRE2Q15555 327 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 GLRA4Q5JXX5 417 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 MOXD1Q6UVY6 613 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 HPS6Q86YV9 775 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 RBM12BQ8IXT5 1001 aaKnown RBP4.14□□□□□ -1.75
USH2A-202ENST00000366942 UBE2J2Q8N2K1 259 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 DPP10Q8N608 796 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 CDYL2Q8N8U2 506 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 ICA1LQ8NDH6 482 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 A1CFQ9NQ94 594 aaKnown RBP4.14□□□□□ -1.75
USH2A-202ENST00000366942 IFT80Q9P2H3 777 aaPredicted RBP4.14□□□□□ -1.75
USH2A-202ENST00000366942 TRPC4Q9UBN4 977 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 MAD2L2Q9UI95 211 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 LHX6Q9UPM6 363 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 MAGED1Q9Y5V3 778 aaPredicted RBP4.14□□□□□ -1.75
USH2A-202ENST00000366942 DNMT1P26358 1616 aaKnown RBP4.14□□□□□ -1.75
USH2A-202ENST00000366942 ARHGEF40Q8TER5 1519 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 FIGNL2A6NMB9 653 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 SYCE1LA8MT33 242 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 ESPNB1AK53 854 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 BCAT2O15382 392 aaPredicted RBP4.14□□□□□ -1.75
USH2A-202ENST00000366942 TLR5O60602 858 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 DNAJA2O60884 412 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 IL12BP29460 328 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 CLCN1P35523 988 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 BUD31P41223 144 aaPredicted RBP4.14□□□□□ -1.75
USH2A-202ENST00000366942 CARSP49589 748 aaKnown RBP4.14□□□□□ -1.75
USH2A-202ENST00000366942 GJA9P57773 515 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 ETF1P62495 437 aaKnown RBP4.14□□□□□ -1.75
USH2A-202ENST00000366942 SPARCL1Q14515 664 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 SHROOM1Q2M3G4 852 aaPredicted RBP4.14□□□□□ -1.75
USH2A-202ENST00000366942 MUM1Q2TAK8 710 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 TMEM35AQ53FP2 167 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 ADGRF1Q5T601 910 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 LBX2Q6XYB7 198 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 ADHFE1Q8IWW8 467 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 PPP1R35Q8TAP8 253 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 ANKRD49Q8WVL7 239 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 OVCA2Q8WZ82 227 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 GMLQ99445 158 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 SELENOSQ9BQE4 189 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 SPATA5L1Q9BVQ7 753 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 DCTPP1Q9H773 170 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 WDR26Q9H7D7 661 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 RXFP1Q9HBX9 757 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 ATP13A2Q9NQ11 1180 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 MTO1Q9Y2Z2 717 aaKnown RBP4.14□□□□□ -1.75
USH2A-202ENST00000366942 PCDHA2Q9Y5H9 948 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 UNC13BO14795 1591 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 MAST1Q9Y2H9 1570 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 PVALEFA0A1B0GWK0 134 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 ANKRD34BA5PLL1 514 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 M0QZ24 198 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 IRAK2O43187 625 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 CDC40O60508 579 aaKnown RBP eCLIP4.14□□□□□ -1.75
USH2A-202ENST00000366942 MED24O75448 989 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 IL33O95760 270 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 ERBB2P04626 1255 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 GIMD1P0DJR0 217 aa4.14□□□□□ -1.75
USH2A-202ENST00000366942 PKMP14618 531 aaKnown RBP4.14□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms