RNA–Protein interactions for RNA: ENST00000366304.3

HMGB1P39-201, Transcript of high mobility group box 1 pseudogene 39, humanhuman

BASIC

Gene HMGB1P39, Length 880 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P39-201ENST00000366304 GNLYP22749 145 aa8.67□□□□□ -1.02
HMGB1P39-201ENST00000366304 CHRNA3P32297 505 aa8.67□□□□□ -1.02
HMGB1P39-201ENST00000366304 DCTP40126 519 aa8.67□□□□□ -1.02
HMGB1P39-201ENST00000366304 MAPK10P53779 464 aa8.67□□□□□ -1.02
HMGB1P39-201ENST00000366304 C16orf72Q14CZ0 275 aa8.67□□□□□ -1.02
HMGB1P39-201ENST00000366304 AGERQ15109 404 aa8.67□□□□□ -1.02
HMGB1P39-201ENST00000366304 ERN2Q76MJ5 926 aaKnown RBP8.67□□□□□ -1.02
HMGB1P39-201ENST00000366304 CHSY1Q86X52 802 aa8.67□□□□□ -1.02
HMGB1P39-201ENST00000366304 SLITRK4Q8IW52 837 aa8.67□□□□□ -1.02
HMGB1P39-201ENST00000366304 PHACTR4Q8IZ21 702 aa8.67□□□□□ -1.02
HMGB1P39-201ENST00000366304 UBR7Q8N806 425 aa8.67□□□□□ -1.02
HMGB1P39-201ENST00000366304 Q8N9G6 341 aaPredicted RBP8.67□□□□□ -1.02
HMGB1P39-201ENST00000366304 ZSCAN1Q8NBB4 408 aa8.67□□□□□ -1.02
HMGB1P39-201ENST00000366304 PCDH19Q8TAB3 1148 aa8.67□□□□□ -1.02
HMGB1P39-201ENST00000366304 WDR48Q8TAF3 677 aa8.67□□□□□ -1.02
HMGB1P39-201ENST00000366304 C9orf43Q8TAL5 461 aaPredicted RBP8.67□□□□□ -1.02
HMGB1P39-201ENST00000366304 SLC35F5Q8WV83 523 aa8.67□□□□□ -1.02
HMGB1P39-201ENST00000366304 ERCC4Q92889 916 aaPredicted RBP8.67□□□□□ -1.02
HMGB1P39-201ENST00000366304 FUBP1Q96AE4 644 aaKnown RBP8.67□□□□□ -1.02
HMGB1P39-201ENST00000366304 ABHD17AQ96GS6 310 aa8.67□□□□□ -1.02
HMGB1P39-201ENST00000366304 PSMB7Q99436 277 aa8.67□□□□□ -1.02
HMGB1P39-201ENST00000366304 C1QTNF2Q9BXJ5 285 aa8.67□□□□□ -1.02
HMGB1P39-201ENST00000366304 HDAC8Q9BY41 377 aa8.67□□□□□ -1.02
HMGB1P39-201ENST00000366304 SEMA6CQ9H3T2 930 aa8.67□□□□□ -1.02
HMGB1P39-201ENST00000366304 LRRN3Q9H3W5 708 aa8.67□□□□□ -1.02
HMGB1P39-201ENST00000366304 ZNF768Q9H5H4 540 aaKnown RBP8.67□□□□□ -1.02
HMGB1P39-201ENST00000366304 CNGB3Q9NQW8 809 aa8.67□□□□□ -1.02
HMGB1P39-201ENST00000366304 SEPT10Q9P0V9 454 aa8.67□□□□□ -1.02
HMGB1P39-201ENST00000366304 APOBEC3BQ9UH17 382 aaKnown RBP8.67□□□□□ -1.02
HMGB1P39-201ENST00000366304 TUBD1Q9UJT1 453 aa8.67□□□□□ -1.02
HMGB1P39-201ENST00000366304 ITM2BQ9Y287 266 aa8.67□□□□□ -1.02
HMGB1P39-201ENST00000366304 TLR6Q9Y2C9 796 aa8.67□□□□□ -1.02
HMGB1P39-201ENST00000366304 SDK2Q58EX2 2172 aa8.66□□□□□ -1.02
HMGB1P39-201ENST00000366304 VPS37CA5D8V6 355 aaPredicted RBP8.66□□□□□ -1.02
HMGB1P39-201ENST00000366304 ZNF821O75541 412 aaPredicted RBP8.66□□□□□ -1.02
HMGB1P39-201ENST00000366304 CLDN1O95832 211 aa8.66□□□□□ -1.02
HMGB1P39-201ENST00000366304 ANXA6P08133 673 aa8.66□□□□□ -1.02
HMGB1P39-201ENST00000366304 TRIM21P19474 475 aaKnown RBP8.66□□□□□ -1.02
HMGB1P39-201ENST00000366304 RRM1P23921 792 aa8.66□□□□□ -1.02
HMGB1P39-201ENST00000366304 VARSP26640 1264 aaKnown RBP8.66□□□□□ -1.02
HMGB1P39-201ENST00000366304 IGFALSP35858 605 aa8.66□□□□□ -1.02
HMGB1P39-201ENST00000366304 NNMTP40261 264 aa8.66□□□□□ -1.02
HMGB1P39-201ENST00000366304 RABIFP47224 123 aa8.66□□□□□ -1.02
HMGB1P39-201ENST00000366304 RIPPLY3P57055 190 aa8.66□□□□□ -1.02
HMGB1P39-201ENST00000366304 EIF4EBP2Q13542 120 aaPredicted RBP8.66□□□□□ -1.02
HMGB1P39-201ENST00000366304 CEP135Q66GS9 1140 aa8.66□□□□□ -1.02
HMGB1P39-201ENST00000366304 CAPRIN2Q6IMN6 1127 aaKnown RBP8.66□□□□□ -1.02
HMGB1P39-201ENST00000366304 FBXL22Q6P050 247 aa8.66□□□□□ -1.02
HMGB1P39-201ENST00000366304 SHC4Q6S5L8 630 aa8.66□□□□□ -1.02
HMGB1P39-201ENST00000366304 TMIEQ8NEW7 156 aa8.66□□□□□ -1.02
HMGB1P39-201ENST00000366304 GRIN3AQ8TCU5 1115 aa8.66□□□□□ -1.02
HMGB1P39-201ENST00000366304 IRGQQ8WZA9 623 aa8.66□□□□□ -1.02
HMGB1P39-201ENST00000366304 PCMTD1Q96MG8 357 aaPredicted RBP8.66□□□□□ -1.02
HMGB1P39-201ENST00000366304 STRADBQ9C0K7 418 aa8.66□□□□□ -1.02
HMGB1P39-201ENST00000366304 TNKS2Q9H2K2 1166 aa8.66□□□□□ -1.02
HMGB1P39-201ENST00000366304 TMPRSS4Q9NRS4 437 aa8.66□□□□□ -1.02
HMGB1P39-201ENST00000366304 SPASTQ9UBP0 616 aa8.66□□□□□ -1.02
HMGB1P39-201ENST00000366304 SMC3Q9UQE7 1217 aa8.66□□□□□ -1.02
HMGB1P39-201ENST00000366304 FADS3Q9Y5Q0 445 aa8.66□□□□□ -1.02
HMGB1P39-201ENST00000366304 RNF215Q9Y6U7 377 aa8.66□□□□□ -1.02
HMGB1P39-201ENST00000366304 WASF2Q9Y6W5 498 aa8.66□□□□□ -1.02
HMGB1P39-201ENST00000366304 MORC2Q9Y6X9 1032 aaPredicted RBP8.66□□□□□ -1.02
HMGB1P39-201ENST00000366304 CELSR1Q9NYQ6 3014 aa8.65□□□□□ -1.02
HMGB1P39-201ENST00000366304 PRRC2CQ9Y520 2896 aaKnown RBP8.65□□□□□ -1.02
HMGB1P39-201ENST00000366304 APCP25054 2843 aa8.65□□□□□ -1.02
HMGB1P39-201ENST00000366304 TYW5A2RUC4 315 aaKnown RBP8.65□□□□□ -1.02
HMGB1P39-201ENST00000366304 KCNU1A8MYU2 1149 aa8.65□□□□□ -1.02
HMGB1P39-201ENST00000366304 LEFTY1O75610 366 aa8.65□□□□□ -1.02
HMGB1P39-201ENST00000366304 ENDOD1O94919 500 aa8.65□□□□□ -1.02
HMGB1P39-201ENST00000366304 AGFG2O95081 481 aa8.65□□□□□ -1.02
HMGB1P39-201ENST00000366304 IGLV3-25P01717 112 aa8.65□□□□□ -1.02
HMGB1P39-201ENST00000366304 PRKCGP05129 697 aa8.65□□□□□ -1.02
HMGB1P39-201ENST00000366304 ADRB3P13945 408 aa8.65□□□□□ -1.02
HMGB1P39-201ENST00000366304 ITGB7P26010 798 aa8.65□□□□□ -1.02
HMGB1P39-201ENST00000366304 TNFRSF8P28908 595 aa8.65□□□□□ -1.02
HMGB1P39-201ENST00000366304 ABL2P42684 1182 aa8.65□□□□□ -1.02
HMGB1P39-201ENST00000366304 MCCD1P59942 119 aaPredicted RBP8.65□□□□□ -1.02
HMGB1P39-201ENST00000366304 RPS21P63220 83 aaKnown RBP8.65□□□□□ -1.02
HMGB1P39-201ENST00000366304 SULT2A1Q06520 285 aa8.65□□□□□ -1.02
HMGB1P39-201ENST00000366304 SLC12A1Q13621 1099 aa8.65□□□□□ -1.02
HMGB1P39-201ENST00000366304 ARTNQ5T4W7 220 aa8.65□□□□□ -1.02
HMGB1P39-201ENST00000366304 LINGO4Q6UY18 593 aa8.65□□□□□ -1.02
HMGB1P39-201ENST00000366304 DPY19L3Q6ZPD9 716 aa8.65□□□□□ -1.02
HMGB1P39-201ENST00000366304 TICAM1Q8IUC6 712 aa8.65□□□□□ -1.02
HMGB1P39-201ENST00000366304 CCNJLQ8IV13 435 aa8.65□□□□□ -1.02
HMGB1P39-201ENST00000366304 ARL10Q8N8L6 244 aa8.65□□□□□ -1.02
HMGB1P39-201ENST00000366304 GOLGA5Q8TBA6 731 aa8.65□□□□□ -1.02
HMGB1P39-201ENST00000366304 CENPTQ96BT3 561 aa8.65□□□□□ -1.02
HMGB1P39-201ENST00000366304 LENG8Q96PV6 779 aaPredicted RBP8.65□□□□□ -1.02
HMGB1P39-201ENST00000366304 DDX50Q9BQ39 737 aaKnown RBP8.65□□□□□ -1.02
HMGB1P39-201ENST00000366304 IMPG2Q9BZV3 1241 aa8.65□□□□□ -1.02
HMGB1P39-201ENST00000366304 MIS12Q9H081 205 aa8.65□□□□□ -1.02
HMGB1P39-201ENST00000366304 MBNL1Q9NR56 388 aaKnown RBP8.65□□□□□ -1.02
HMGB1P39-201ENST00000366304 IPO11Q9UI26 975 aaKnown RBP8.65□□□□□ -1.02
HMGB1P39-201ENST00000366304 HS3ST2Q9Y278 367 aa8.65□□□□□ -1.02
HMGB1P39-201ENST00000366304 PCDHB11Q9Y5F2 797 aa8.65□□□□□ -1.02
HMGB1P39-201ENST00000366304 HIVEP1P15822 2718 aa8.65□□□□□ -1.03
HMGB1P39-201ENST00000366304 ADGRG4Q8IZF6 3080 aa8.65□□□□□ -1.03
HMGB1P39-201ENST00000366304 PVALEFA0A1B0GWK0 134 aa8.64□□□□□ -1.03
HMGB1P39-201ENST00000366304 PRR19A6NJB7 356 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms