RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 RAB10P61026 200 aa21.09■□□□□ 0.97
CCDC88B-203ENST00000359902 USP46P62068 366 aa21.09■□□□□ 0.97
CCDC88B-203ENST00000359902 C6orf163Q5TEZ5 329 aa21.09■□□□□ 0.97
CCDC88B-203ENST00000359902 LRRC74BQ6ZQY2 392 aa21.09■□□□□ 0.97
CCDC88B-203ENST00000359902 UMODL1-AS1Q8N2C9 162 aa21.09■□□□□ 0.97
CCDC88B-203ENST00000359902 AGR3Q8TD06 166 aa21.09■□□□□ 0.97
CCDC88B-203ENST00000359902 CMTM5Q96DZ9 223 aa21.09■□□□□ 0.97
CCDC88B-203ENST00000359902 FUBP3Q96I24 572 aaKnown RBP eCLIP21.09■□□□□ 0.97
CCDC88B-203ENST00000359902 GPR78Q96P69 363 aa21.09■□□□□ 0.97
CCDC88B-203ENST00000359902 MYLKQ15746 1914 aa21.08■□□□□ 0.97
CCDC88B-203ENST00000359902 FAM95CA0A1B0GW59 222 aa21.08■□□□□ 0.97
CCDC88B-203ENST00000359902 TMEM189-UBE2V1I3L0A0 370 aa21.08■□□□□ 0.97
CCDC88B-203ENST00000359902 DCXO43602 365 aa21.08■□□□□ 0.97
CCDC88B-203ENST00000359902 ZBTB14O43829 449 aa21.08■□□□□ 0.97
CCDC88B-203ENST00000359902 MPSTP25325 297 aa21.08■□□□□ 0.97
CCDC88B-203ENST00000359902 CDC25CP30307 473 aa21.08■□□□□ 0.97
CCDC88B-203ENST00000359902 SLC1A2P43004 574 aa21.08■□□□□ 0.97
CCDC88B-203ENST00000359902 TBX4P57082 545 aa21.08■□□□□ 0.97
CCDC88B-203ENST00000359902 ZNF460Q14592 562 aa21.08■□□□□ 0.97
CCDC88B-203ENST00000359902 MBTPS1Q14703 1052 aa21.08■□□□□ 0.97
CCDC88B-203ENST00000359902 TSNAXIP1Q2TAA8 658 aa21.08■□□□□ 0.97
CCDC88B-203ENST00000359902 METTL21CQ5VZV1 264 aa21.08■□□□□ 0.97
CCDC88B-203ENST00000359902 TRIM68Q6AZZ1 485 aa21.08■□□□□ 0.97
CCDC88B-203ENST00000359902 KDELC1Q6UW63 502 aa21.08■□□□□ 0.97
CCDC88B-203ENST00000359902 MYLK4Q86YV6 388 aaPredicted RBP21.08■□□□□ 0.97
CCDC88B-203ENST00000359902 C2CD4AQ8NCU7 369 aaPredicted RBP21.08■□□□□ 0.97
CCDC88B-203ENST00000359902 LINC01599Q8WXQ3 324 aa21.08■□□□□ 0.97
CCDC88B-203ENST00000359902 UBE2OQ9C0C9 1292 aaKnown RBP21.08■□□□□ 0.97
CCDC88B-203ENST00000359902 SLC25A51Q9H1U9 297 aa21.08■□□□□ 0.97
CCDC88B-203ENST00000359902 FBXO44Q9H4M3 255 aa21.08■□□□□ 0.97
CCDC88B-203ENST00000359902 PRDM5Q9NQX1 630 aaPredicted RBP21.08■□□□□ 0.97
CCDC88B-203ENST00000359902 TBC1D13Q9NVG8 400 aa21.08■□□□□ 0.97
CCDC88B-203ENST00000359902 ZNF212Q9UDV6 495 aa21.08■□□□□ 0.97
CCDC88B-203ENST00000359902 RAP2CQ9Y3L5 183 aa21.08■□□□□ 0.97
CCDC88B-203ENST00000359902 WASF2Q9Y6W5 498 aa21.08■□□□□ 0.97
CCDC88B-203ENST00000359902 MATN2O00339 956 aa21.07■□□□□ 0.96
CCDC88B-203ENST00000359902 SLC2A3P11169 496 aa21.07■□□□□ 0.96
CCDC88B-203ENST00000359902 ACADSP16219 412 aa21.07■□□□□ 0.96
CCDC88B-203ENST00000359902 CCR10P46092 362 aa21.07■□□□□ 0.96
CCDC88B-203ENST00000359902 PRKAA2P54646 552 aa21.07■□□□□ 0.96
CCDC88B-203ENST00000359902 PCSK7Q16549 785 aa21.07■□□□□ 0.96
CCDC88B-203ENST00000359902 NFE2Q16621 373 aaPredicted RBP21.07■□□□□ 0.96
CCDC88B-203ENST00000359902 MUM1Q2TAK8 710 aa21.07■□□□□ 0.96
CCDC88B-203ENST00000359902 RALGPS1Q5JS13 557 aa21.07■□□□□ 0.96
CCDC88B-203ENST00000359902 C1orf146Q5VVC0 180 aa21.07■□□□□ 0.96
CCDC88B-203ENST00000359902 KIAA0930Q6ICG6 404 aaPredicted RBP21.07■□□□□ 0.96
CCDC88B-203ENST00000359902 TRAF7Q6Q0C0 670 aa21.07■□□□□ 0.96
CCDC88B-203ENST00000359902 TFAP2DQ7Z6R9 452 aa21.07■□□□□ 0.96
CCDC88B-203ENST00000359902 SHKBP1Q8TBC3 707 aa21.07■□□□□ 0.96
CCDC88B-203ENST00000359902 OR52B2Q96RD2 323 aa21.07■□□□□ 0.96
CCDC88B-203ENST00000359902 SHCBP1LQ9BZQ2 653 aa21.07■□□□□ 0.96
CCDC88B-203ENST00000359902 GMIPQ9P107 970 aa21.07■□□□□ 0.96
CCDC88B-203ENST00000359902 DNAJB4Q9UDY4 337 aa21.07■□□□□ 0.96
CCDC88B-203ENST00000359902 PRG3Q9Y2Y8 225 aaPredicted RBP21.07■□□□□ 0.96
CCDC88B-203ENST00000359902 E9PBE3 544 aa21.07■□□□□ 0.96
CCDC88B-203ENST00000359902 KLHL41O60662 606 aa21.07■□□□□ 0.96
CCDC88B-203ENST00000359902 LUC7L3O95232 432 aaKnown RBP21.07■□□□□ 0.96
CCDC88B-203ENST00000359902 STMN1P16949 149 aa21.07■□□□□ 0.96
CCDC88B-203ENST00000359902 PAMP19021 973 aa21.07■□□□□ 0.96
CCDC88B-203ENST00000359902 GLDCP23378 1020 aa21.07■□□□□ 0.96
CCDC88B-203ENST00000359902 NUMBP49757 651 aa21.07■□□□□ 0.96
CCDC88B-203ENST00000359902 NDST2P52849 883 aa21.07■□□□□ 0.96
CCDC88B-203ENST00000359902 NAGLUP54802 743 aa21.07■□□□□ 0.96
CCDC88B-203ENST00000359902 FAM189BP81408 668 aa21.07■□□□□ 0.96
CCDC88B-203ENST00000359902 DLG1Q12959 904 aa21.07■□□□□ 0.96
CCDC88B-203ENST00000359902 HNRNPDQ14103 355 aaKnown RBP21.07■□□□□ 0.96
CCDC88B-203ENST00000359902 SEPT6Q14141 434 aa21.07■□□□□ 0.96
CCDC88B-203ENST00000359902 ARL13AQ5H913 290 aaPredicted RBP21.07■□□□□ 0.96
CCDC88B-203ENST00000359902 FSCBQ5H9T9 825 aa21.07■□□□□ 0.96
CCDC88B-203ENST00000359902 MS4A13Q5J8X5 152 aa21.07■□□□□ 0.96
CCDC88B-203ENST00000359902 LRRC8EQ6NSJ5 796 aa21.07■□□□□ 0.96
CCDC88B-203ENST00000359902 NXNL1Q96CM4 212 aa21.07■□□□□ 0.96
CCDC88B-203ENST00000359902 ARNT2Q9HBZ2 717 aa21.07■□□□□ 0.96
CCDC88B-203ENST00000359902 BPTFQ12830 3046 aa21.07■□□□□ 0.96
CCDC88B-203ENST00000359902 LOC100653049A0A140TA62 436 aa21.06■□□□□ 0.96
CCDC88B-203ENST00000359902 J3KR12 359 aa21.06■□□□□ 0.96
CCDC88B-203ENST00000359902 KRT34O76011 436 aa21.06■□□□□ 0.96
CCDC88B-203ENST00000359902 RHOQP17081 205 aa21.06■□□□□ 0.96
CCDC88B-203ENST00000359902 RPL14P50914 215 aaKnown RBP21.06■□□□□ 0.96
CCDC88B-203ENST00000359902 ACLYP53396 1101 aa21.06■□□□□ 0.96
CCDC88B-203ENST00000359902 ZNF470Q6ECI4 717 aa21.06■□□□□ 0.96
CCDC88B-203ENST00000359902 SLC25A41Q8N5S1 370 aa21.06■□□□□ 0.96
CCDC88B-203ENST00000359902 SCG3Q8WXD2 468 aaKnown RBP21.06■□□□□ 0.96
CCDC88B-203ENST00000359902 HMCESQ96FZ2 354 aa21.06■□□□□ 0.96
CCDC88B-203ENST00000359902 IMP4Q96G21 291 aaKnown RBP21.06■□□□□ 0.96
CCDC88B-203ENST00000359902 FBXO5Q9UKT4 447 aa21.06■□□□□ 0.96
CCDC88B-203ENST00000359902 DLX3O60479 287 aa21.06■□□□□ 0.96
CCDC88B-203ENST00000359902 CNTN5O94779 1100 aa21.06■□□□□ 0.96
CCDC88B-203ENST00000359902 PIGNO95427 931 aa21.06■□□□□ 0.96
CCDC88B-203ENST00000359902 CRABP2P29373 138 aa21.06■□□□□ 0.96
CCDC88B-203ENST00000359902 RENBPP51606 427 aa21.06■□□□□ 0.96
CCDC88B-203ENST00000359902 TAS2R39P59534 338 aa21.06■□□□□ 0.96
CCDC88B-203ENST00000359902 ALFQ53S48 1182 aa21.06■□□□□ 0.96
CCDC88B-203ENST00000359902 NEPROQ6NW34 567 aa21.06■□□□□ 0.96
CCDC88B-203ENST00000359902 ARHGAP18Q8N392 663 aa21.06■□□□□ 0.96
CCDC88B-203ENST00000359902 SPATA6LQ8N4H0 392 aa21.06■□□□□ 0.96
CCDC88B-203ENST00000359902 FAM167BQ9BTA0 163 aa21.06■□□□□ 0.96
CCDC88B-203ENST00000359902 PRKD2Q9BZL6 878 aa21.06■□□□□ 0.96
CCDC88B-203ENST00000359902 ZYG11BQ9C0D3 744 aa21.06■□□□□ 0.96
CCDC88B-203ENST00000359902 ATP13A1Q9HD20 1204 aa21.06■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms