RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 GCLCP48506 637 aaPredicted RBP2.39□□□□□ -2.03
VPS54-202ENST00000354504 NDUFV1P49821 464 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 AP3M2P53677 418 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 POLGP54098 1239 aaPredicted RBP2.39□□□□□ -2.03
VPS54-202ENST00000354504 NAP1L1P55209 391 aaKnown RBP2.39□□□□□ -2.03
VPS54-202ENST00000354504 SRSF2Q01130 221 aaKnown RBP2.39□□□□□ -2.03
VPS54-202ENST00000354504 CKAP4Q07065 602 aaKnown RBP2.39□□□□□ -2.03
VPS54-202ENST00000354504 RPS6KA1Q15418 735 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 CCL15Q16663 113 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 CCDC181Q5TID7 509 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 SYPL2Q5VXT5 272 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 SLFN12LQ6IEE8 588 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 TMEM270Q6UE05 265 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 CYS1Q717R9 158 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 SLC26A9Q7LBE3 791 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 SCD5Q86SK9 330 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 SRLQ86TD4 932 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 SPATS2Q86XZ4 545 aaKnown RBP2.39□□□□□ -2.03
VPS54-202ENST00000354504 RHPN2Q8IUC4 686 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 ANKRD35Q8N283 1001 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 PYROXD2Q8N2H3 581 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 MPP5Q8N3R9 675 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 PPM1NQ8N819 430 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 ACVR1CQ8NER5 493 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 BEST2Q8NFU1 509 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 HMGCLL1Q8TB92 370 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 MYCBPAPQ8TBZ2 947 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 C1orf54Q8WWF1 131 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 NDRG1Q92597 394 aaKnown RBP2.39□□□□□ -2.03
VPS54-202ENST00000354504 JADE3Q92613 823 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 CCDC127Q96BQ5 260 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 DCPSQ96C86 337 aaKnown RBP2.39□□□□□ -2.03
VPS54-202ENST00000354504 FOXRED1Q96CU9 486 aaPredicted RBP2.39□□□□□ -2.03
VPS54-202ENST00000354504 PRR11Q96HE9 360 aaPredicted RBP2.39□□□□□ -2.03
VPS54-202ENST00000354504 FAM167AQ96KS9 214 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 CCDC43Q96MW1 224 aaKnown RBP2.39□□□□□ -2.03
VPS54-202ENST00000354504 NT5C1BQ96P26 610 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 DMRT3Q9NQL9 472 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 ZNHIT6Q9NWK9 470 aaKnown RBP2.39□□□□□ -2.03
VPS54-202ENST00000354504 MKS1Q9NXB0 559 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 ARHGEF38Q9NXL2 777 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 TMPRSS11EQ9UL52 423 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 BARX2Q9UMQ3 279 aaPredicted RBP2.39□□□□□ -2.03
VPS54-202ENST00000354504 MED16Q9Y2X0 877 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 MTF2Q9Y483 593 aaPredicted RBP2.39□□□□□ -2.03
VPS54-202ENST00000354504 IGLV3-10A0A075B6K4 115 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 BCLAF3A2AJT9 711 aaKnown RBP2.39□□□□□ -2.03
VPS54-202ENST00000354504 ASB14A6NK59 587 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 TMEM189-UBE2V1I3L0A0 370 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 NBNO60934 754 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 SNNO75324 88 aaPredicted RBP2.39□□□□□ -2.03
VPS54-202ENST00000354504 DDHD2O94830 711 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 METTL18O95568 372 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 TTC4O95801 387 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 TUBBP07437 444 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 PF4V1P10720 104 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 CCNB1P14635 433 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 PAMP19021 973 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 TMOD1P28289 359 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 NF2P35240 595 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 RPL22P35268 128 aaKnown RBP2.39□□□□□ -2.03
VPS54-202ENST00000354504 GRIA1P42261 906 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 ZFP36L2P47974 494 aaKnown RBP2.39□□□□□ -2.03
VPS54-202ENST00000354504 ITGA8P53708 1063 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 VCPP55072 806 aaKnown RBP2.39□□□□□ -2.03
VPS54-202ENST00000354504 BEX3Q00994 111 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 DR1Q01658 176 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 PAFAH1B3Q15102 231 aaKnown RBP2.39□□□□□ -2.03
VPS54-202ENST00000354504 CYP27C1Q4G0S4 372 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 CT83Q5H943 113 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 FBXO47Q5MNV8 452 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 SLC27A1Q6PCB7 646 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 PLEKHH3Q7Z736 793 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 KIAA1328Q86T90 577 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 STK32CQ86UX6 486 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 TRABD2AQ86V40 505 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 PNMA8AQ86V59 439 aaPredicted RBP2.39□□□□□ -2.03
VPS54-202ENST00000354504 MYO1HQ8N1T3 1032 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 EMC1Q8N766 993 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 BANPQ8N9N5 519 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 OR52K2Q8NGK3 314 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 MDM1Q8TC05 714 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 USP7Q93009 1102 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 ZNF689Q96CS4 500 aaPredicted RBP2.39□□□□□ -2.03
VPS54-202ENST00000354504 CFAP57Q96MR6 1250 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 GPR78Q96P69 363 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 MCEEQ96PE7 176 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 HNRNPABQ99729 332 aaKnown RBP2.39□□□□□ -2.03
VPS54-202ENST00000354504 MLPHQ9BV36 600 aaPredicted RBP2.39□□□□□ -2.03
VPS54-202ENST00000354504 TRIT1Q9H3H1 467 aaKnown RBP2.39□□□□□ -2.03
VPS54-202ENST00000354504 TLE6Q9H808 572 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 KIF9Q9HAQ2 790 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 CYP3A43Q9HB55 503 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 PDFQ9HBH1 243 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 PCDH18Q9HCL0 1135 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 SLC52A3Q9NQ40 469 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 PAK6Q9NQU5 681 aaPredicted RBP2.39□□□□□ -2.03
VPS54-202ENST00000354504 PIGVQ9NUD9 493 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 CCM2LQ9NUG4 571 aaPredicted RBP2.39□□□□□ -2.03
VPS54-202ENST00000354504 PRMT7Q9NVM4 692 aaPredicted RBP2.39□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms