RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 TTC1Q99614 292 aa22.06■■□□□ 1.12
SHMT1-202ENST00000352886 GPAMQ9HCL2 828 aa22.06■■□□□ 1.12
SHMT1-202ENST00000352886 TRMT13Q9NUP7 481 aaKnown RBP22.06■■□□□ 1.12
SHMT1-202ENST00000352886 IPO11Q9UI26 975 aaKnown RBP22.06■■□□□ 1.12
SHMT1-202ENST00000352886 PCDHB8Q9UN66 801 aa22.06■■□□□ 1.12
SHMT1-202ENST00000352886 PIGNO95427 931 aa22.06■■□□□ 1.12
SHMT1-202ENST00000352886 SKIP12755 728 aa22.06■■□□□ 1.12
SHMT1-202ENST00000352886 STMN1P16949 149 aa22.06■■□□□ 1.12
SHMT1-202ENST00000352886 SEPT6Q14141 434 aa22.06■■□□□ 1.12
SHMT1-202ENST00000352886 PCSK7Q16549 785 aa22.06■■□□□ 1.12
SHMT1-202ENST00000352886 METTL21CQ5VZV1 264 aa22.06■■□□□ 1.12
SHMT1-202ENST00000352886 ZNF598Q86UK7 904 aaKnown RBP22.06■■□□□ 1.12
SHMT1-202ENST00000352886 ACTRT2Q8TDY3 377 aa22.06■■□□□ 1.12
SHMT1-202ENST00000352886 PTCD2Q8WV60 388 aaKnown RBP22.06■■□□□ 1.12
SHMT1-202ENST00000352886 PPP1R2P1Q96PQ5 205 aa22.06■■□□□ 1.12
SHMT1-202ENST00000352886 WDR55Q9H6Y2 383 aaPredicted RBP22.06■■□□□ 1.12
SHMT1-202ENST00000352886 XPR1Q9UBH6 696 aa22.06■■□□□ 1.12
SHMT1-202ENST00000352886 NOD1Q9Y239 953 aa22.06■■□□□ 1.12
SHMT1-202ENST00000352886 LRCH1Q9Y2L9 728 aa22.06■■□□□ 1.12
SHMT1-202ENST00000352886 NEMP1O14524 444 aa22.05■■□□□ 1.12
SHMT1-202ENST00000352886 PDE5AO76074 875 aa22.05■■□□□ 1.12
SHMT1-202ENST00000352886 SORBS2O94875 1100 aaKnown RBP22.05■■□□□ 1.12
SHMT1-202ENST00000352886 COL6A2P12110 1019 aa22.05■■□□□ 1.12
SHMT1-202ENST00000352886 COX4I1P13073 169 aa22.05■■□□□ 1.12
SHMT1-202ENST00000352886 ITGAXP20702 1163 aa22.05■■□□□ 1.12
SHMT1-202ENST00000352886 FLT3LGP49771 235 aa22.05■■□□□ 1.12
SHMT1-202ENST00000352886 RPL14P50914 215 aaKnown RBP22.05■■□□□ 1.12
SHMT1-202ENST00000352886 KLF10Q13118 480 aa22.05■■□□□ 1.12
SHMT1-202ENST00000352886 ZNF470Q6ECI4 717 aa22.05■■□□□ 1.12
SHMT1-202ENST00000352886 RANBP10Q6VN20 620 aa22.05■■□□□ 1.12
SHMT1-202ENST00000352886 DEFB107AQ8IZN7 70 aa22.05■■□□□ 1.12
SHMT1-202ENST00000352886 SPATA6LQ8N4H0 392 aa22.05■■□□□ 1.12
SHMT1-202ENST00000352886 FAM136AQ96C01 138 aa22.05■■□□□ 1.12
SHMT1-202ENST00000352886 UBE2OQ9C0C9 1292 aaKnown RBP22.05■■□□□ 1.12
SHMT1-202ENST00000352886 MRM3Q9HC36 420 aaKnown RBP22.05■■□□□ 1.12
SHMT1-202ENST00000352886 TREX1Q9NSU2 369 aa22.05■■□□□ 1.12
SHMT1-202ENST00000352886 NDE1Q9NXR1 346 aa22.05■■□□□ 1.12
SHMT1-202ENST00000352886 CDH22Q9UJ99 828 aa22.05■■□□□ 1.12
SHMT1-202ENST00000352886 PPM1HQ9ULR3 514 aa22.05■■□□□ 1.12
SHMT1-202ENST00000352886 TARM1B6A8C7 271 aa22.05■■□□□ 1.12
SHMT1-202ENST00000352886 HDAC3O15379 428 aa22.05■■□□□ 1.12
SHMT1-202ENST00000352886 CCNT2O60583 730 aaKnown RBP22.05■■□□□ 1.12
SHMT1-202ENST00000352886 BAG2O95816 211 aa22.05■■□□□ 1.12
SHMT1-202ENST00000352886 PAMP19021 973 aa22.05■■□□□ 1.12
SHMT1-202ENST00000352886 GLDCP23378 1020 aa22.05■■□□□ 1.12
SHMT1-202ENST00000352886 MLLT6P55198 1093 aaPredicted RBP22.05■■□□□ 1.12
SHMT1-202ENST00000352886 PIK3R6Q5UE93 754 aa22.05■■□□□ 1.12
SHMT1-202ENST00000352886 SEL1L3Q68CR1 1132 aa22.05■■□□□ 1.12
SHMT1-202ENST00000352886 SAPCD2Q86UD0 394 aa22.05■■□□□ 1.12
SHMT1-202ENST00000352886 ZNF280BQ86YH2 543 aa22.05■■□□□ 1.12
SHMT1-202ENST00000352886 KBTBD2Q8IY47 623 aa22.05■■□□□ 1.12
SHMT1-202ENST00000352886 NXNL1Q96CM4 212 aa22.05■■□□□ 1.12
SHMT1-202ENST00000352886 UNKQ9C0B0 810 aaKnown RBP22.05■■□□□ 1.12
SHMT1-202ENST00000352886 DOCK4Q8N1I0 1966 aa22.05■■□□□ 1.12
SHMT1-202ENST00000352886 CCDC189A1A4V9 331 aa22.04■■□□□ 1.12
SHMT1-202ENST00000352886 PRKAA2P54646 552 aa22.04■■□□□ 1.12
SHMT1-202ENST00000352886 INHBEP58166 350 aa22.04■■□□□ 1.12
SHMT1-202ENST00000352886 NKX3-2P78367 333 aa22.04■■□□□ 1.12
SHMT1-202ENST00000352886 KLC1Q07866 573 aa22.04■■□□□ 1.12
SHMT1-202ENST00000352886 TMCO4Q5TGY1 634 aa22.04■■□□□ 1.12
SHMT1-202ENST00000352886 TMC7Q7Z402 723 aa22.04■■□□□ 1.12
SHMT1-202ENST00000352886 ELMO2Q96JJ3 720 aa22.04■■□□□ 1.12
SHMT1-202ENST00000352886 NOL6Q9H6R4 1146 aaKnown RBP22.04■■□□□ 1.12
SHMT1-202ENST00000352886 FKBP6O75344 327 aa22.04■■□□□ 1.12
SHMT1-202ENST00000352886 PRDX6P30041 224 aa22.04■■□□□ 1.12
SHMT1-202ENST00000352886 GPR15P49685 360 aa22.04■■□□□ 1.12
SHMT1-202ENST00000352886 CACNB2Q08289 660 aaPredicted RBP22.04■■□□□ 1.12
SHMT1-202ENST00000352886 DLG1Q12959 904 aa22.04■■□□□ 1.12
SHMT1-202ENST00000352886 NOMO2Q5JPE7 1267 aa22.04■■□□□ 1.12
SHMT1-202ENST00000352886 PGM2L1Q6PCE3 622 aa22.04■■□□□ 1.12
SHMT1-202ENST00000352886 C2CD4AQ8NCU7 369 aaPredicted RBP22.04■■□□□ 1.12
SHMT1-202ENST00000352886 CCDC124Q96CT7 223 aaKnown RBP22.04■■□□□ 1.12
SHMT1-202ENST00000352886 ZNF184Q99676 751 aaPredicted RBP22.04■■□□□ 1.12
SHMT1-202ENST00000352886 DNAJB4Q9UDY4 337 aa22.04■■□□□ 1.12
SHMT1-202ENST00000352886 ARHGAP26Q9UNA1 814 aa22.04■■□□□ 1.12
SHMT1-202ENST00000352886 DLX3O60479 287 aa22.03■■□□□ 1.12
SHMT1-202ENST00000352886 EPHA3P29320 983 aa22.03■■□□□ 1.12
SHMT1-202ENST00000352886 SERPINB5P36952 375 aa22.03■■□□□ 1.12
SHMT1-202ENST00000352886 POLD2P49005 469 aa22.03■■□□□ 1.12
SHMT1-202ENST00000352886 NUMBP49757 651 aa22.03■■□□□ 1.12
SHMT1-202ENST00000352886 FCGRTP55899 365 aa22.03■■□□□ 1.12
SHMT1-202ENST00000352886 WNT3AP56704 352 aa22.03■■□□□ 1.12
SHMT1-202ENST00000352886 BTKQ06187 659 aa22.03■■□□□ 1.12
SHMT1-202ENST00000352886 PRKAA1Q13131 559 aa22.03■■□□□ 1.12
SHMT1-202ENST00000352886 DDR2Q16832 855 aa22.03■■□□□ 1.12
SHMT1-202ENST00000352886 TFAP2DQ7Z6R9 452 aa22.03■■□□□ 1.12
SHMT1-202ENST00000352886 LRRC49Q8IUZ0 686 aa22.03■■□□□ 1.12
SHMT1-202ENST00000352886 GPR78Q96P69 363 aa22.03■■□□□ 1.12
SHMT1-202ENST00000352886 LENG8Q96PV6 779 aaPredicted RBP22.03■■□□□ 1.12
SHMT1-202ENST00000352886 NUF2Q9BZD4 464 aa22.03■■□□□ 1.12
SHMT1-202ENST00000352886 TBC1D13Q9NVG8 400 aa22.03■■□□□ 1.12
SHMT1-202ENST00000352886 ZDHHC2Q9UIJ5 367 aa22.03■■□□□ 1.12
SHMT1-202ENST00000352886 CORO1CQ9ULV4 474 aaPredicted RBP22.03■■□□□ 1.12
SHMT1-202ENST00000352886 TLR6Q9Y2C9 796 aa22.03■■□□□ 1.12
SHMT1-202ENST00000352886 SSX2IPQ9Y2D8 614 aa22.03■■□□□ 1.12
SHMT1-202ENST00000352886 TFEBP19484 476 aa22.02■■□□□ 1.12
SHMT1-202ENST00000352886 TAS2R39P59534 338 aa22.02■■□□□ 1.12
SHMT1-202ENST00000352886 MRPS35P82673 323 aaKnown RBP22.02■■□□□ 1.12
SHMT1-202ENST00000352886 NRG1Q02297 640 aaPredicted RBP22.02■■□□□ 1.12
SHMT1-202ENST00000352886 KIAA0930Q6ICG6 404 aaPredicted RBP22.02■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms