RNA–Protein interactions for RNA: ENST00000350028.4

SAMM50-201, Transcript of SAMM50 sorting and assembly machinery component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SAMM50, Length 1,717 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SAMM50-201ENST00000350028 CCDC22O60826 627 aa16.9■□□□□ 0.3
SAMM50-201ENST00000350028 AHSGP02765 367 aa16.9■□□□□ 0.3
SAMM50-201ENST00000350028 COL6A2P12110 1019 aa16.9■□□□□ 0.3
SAMM50-201ENST00000350028 SERPINH1P50454 418 aaKnown RBP16.9■□□□□ 0.3
SAMM50-201ENST00000350028 AQP5P55064 265 aa16.9■□□□□ 0.3
SAMM50-201ENST00000350028 SNX30Q5VWJ9 437 aa16.9■□□□□ 0.3
SAMM50-201ENST00000350028 NADSYN1Q6IA69 706 aa16.9■□□□□ 0.3
SAMM50-201ENST00000350028 PIWIL2Q8TC59 973 aaKnown RBP16.9■□□□□ 0.3
SAMM50-201ENST00000350028 TADA1Q96BN2 335 aa16.9■□□□□ 0.3
SAMM50-201ENST00000350028 TSNARE1Q96NA8 513 aa16.9■□□□□ 0.3
SAMM50-201ENST00000350028 KLHL5Q96PQ7 755 aa16.9■□□□□ 0.3
SAMM50-201ENST00000350028 STN1Q9H668 368 aaKnown RBP16.9■□□□□ 0.3
SAMM50-201ENST00000350028 CAB39LQ9H9S4 337 aa16.9■□□□□ 0.3
SAMM50-201ENST00000350028 NOD2Q9HC29 1040 aa16.9■□□□□ 0.3
SAMM50-201ENST00000350028 FBXO6Q9NRD1 293 aaPredicted RBP16.9■□□□□ 0.3
SAMM50-201ENST00000350028 ZNF358Q9NW07 568 aa16.9■□□□□ 0.3
SAMM50-201ENST00000350028 STK38LQ9Y2H1 464 aa16.9■□□□□ 0.3
SAMM50-201ENST00000350028 ADAM12O43184 909 aa16.9■□□□□ 0.3
SAMM50-201ENST00000350028 ITM2AO43736 263 aa16.9■□□□□ 0.3
SAMM50-201ENST00000350028 ACSL4O60488 711 aa16.9■□□□□ 0.3
SAMM50-201ENST00000350028 H2AFYO75367 372 aaKnown RBP16.9■□□□□ 0.3
SAMM50-201ENST00000350028 OR1E1P30953 314 aa16.9■□□□□ 0.3
SAMM50-201ENST00000350028 OR1D2P34982 312 aa16.9■□□□□ 0.3
SAMM50-201ENST00000350028 CD86P42081 329 aa16.9■□□□□ 0.3
SAMM50-201ENST00000350028 ABCG1P45844 678 aa16.9■□□□□ 0.3
SAMM50-201ENST00000350028 ABCE1P61221 599 aaKnown RBP16.9■□□□□ 0.3
SAMM50-201ENST00000350028 SEPT6Q14141 434 aa16.9■□□□□ 0.3
SAMM50-201ENST00000350028 USP10Q14694 798 aaKnown RBP16.9■□□□□ 0.3
SAMM50-201ENST00000350028 CNGA3Q16281 694 aa16.9■□□□□ 0.3
SAMM50-201ENST00000350028 PCSK7Q16549 785 aa16.9■□□□□ 0.3
SAMM50-201ENST00000350028 HSF5Q4G112 596 aaPredicted RBP16.9■□□□□ 0.3
SAMM50-201ENST00000350028 RNF168Q8IYW5 571 aaPredicted RBP16.9■□□□□ 0.3
SAMM50-201ENST00000350028 OR6Y1Q8NGX8 325 aa16.9■□□□□ 0.3
SAMM50-201ENST00000350028 RDH11Q8TC12 318 aa16.9■□□□□ 0.3
SAMM50-201ENST00000350028 PTCD3Q96EY7 689 aaKnown RBP16.9■□□□□ 0.3
SAMM50-201ENST00000350028 TLE6Q9H808 572 aa16.9■□□□□ 0.3
SAMM50-201ENST00000350028 NMRAL1Q9HBL8 299 aa16.9■□□□□ 0.3
SAMM50-201ENST00000350028 ARL8BQ9NVJ2 186 aa16.9■□□□□ 0.3
SAMM50-201ENST00000350028 HSFX1Q9UBD0 423 aa16.9■□□□□ 0.3
SAMM50-201ENST00000350028 AFF4Q9UHB7 1163 aaKnown RBP16.9■□□□□ 0.3
SAMM50-201ENST00000350028 DNAJC16Q9Y2G8 782 aa16.9■□□□□ 0.3
SAMM50-201ENST00000350028 C2orf71A6NGG8 1288 aa16.89■□□□□ 0.29
SAMM50-201ENST00000350028 PRAMEF11O60813 436 aa16.89■□□□□ 0.29
SAMM50-201ENST00000350028 PAPSS2O95340 614 aaPredicted RBP16.89■□□□□ 0.29
SAMM50-201ENST00000350028 MMP2P08253 660 aa16.89■□□□□ 0.29
SAMM50-201ENST00000350028 KITP10721 976 aa16.89■□□□□ 0.29
SAMM50-201ENST00000350028 CALB2P22676 271 aa16.89■□□□□ 0.29
SAMM50-201ENST00000350028 ARNTP27540 789 aa16.89■□□□□ 0.29
SAMM50-201ENST00000350028 GABRB3P28472 473 aa16.89■□□□□ 0.29
SAMM50-201ENST00000350028 CHRNA4P43681 627 aa16.89■□□□□ 0.29
SAMM50-201ENST00000350028 HARS2P49590 506 aaKnown RBP16.89■□□□□ 0.29
SAMM50-201ENST00000350028 MNAT1P51948 309 aa16.89■□□□□ 0.29
SAMM50-201ENST00000350028 DSC2Q02487 901 aa16.89■□□□□ 0.29
SAMM50-201ENST00000350028 SLC12A1Q13621 1099 aa16.89■□□□□ 0.29
SAMM50-201ENST00000350028 LBRQ14739 615 aaKnown RBP16.89■□□□□ 0.29
SAMM50-201ENST00000350028 DLG2Q15700 870 aa16.89■□□□□ 0.29
SAMM50-201ENST00000350028 TSTD2Q5T7W7 516 aa16.89■□□□□ 0.29
SAMM50-201ENST00000350028 TMCO4Q5TGY1 634 aa16.89■□□□□ 0.29
SAMM50-201ENST00000350028 KLHDC10Q6PID8 442 aa16.89■□□□□ 0.29
SAMM50-201ENST00000350028 SLC39A5Q6ZMH5 540 aa16.89■□□□□ 0.29
SAMM50-201ENST00000350028 KIAA0408Q6ZU52 694 aa16.89■□□□□ 0.29
SAMM50-201ENST00000350028 RAPH1Q70E73 1250 aa16.89■□□□□ 0.29
SAMM50-201ENST00000350028 KDELC2Q7Z4H8 507 aa16.89■□□□□ 0.29
SAMM50-201ENST00000350028 DEFB128Q7Z7B8 93 aa16.89■□□□□ 0.29
SAMM50-201ENST00000350028 LGI2Q8N0V4 545 aa16.89■□□□□ 0.29
SAMM50-201ENST00000350028 SLC25A41Q8N5S1 370 aa16.89■□□□□ 0.29
SAMM50-201ENST00000350028 C2CD4AQ8NCU7 369 aaPredicted RBP16.89■□□□□ 0.29
SAMM50-201ENST00000350028 CALML6Q8TD86 181 aa16.89■□□□□ 0.29
SAMM50-201ENST00000350028 UTP4Q969X6 686 aaKnown RBP16.89■□□□□ 0.29
SAMM50-201ENST00000350028 IGSF21Q96ID5 467 aa16.89■□□□□ 0.29
SAMM50-201ENST00000350028 ZNF599Q96NL3 588 aa16.89■□□□□ 0.29
SAMM50-201ENST00000350028 TBC1D10AQ9BXI6 508 aa16.89■□□□□ 0.29
SAMM50-201ENST00000350028 PPP1R12CQ9BZL4 782 aa16.89■□□□□ 0.29
SAMM50-201ENST00000350028 ATXN3LQ9H3M9 355 aa16.89■□□□□ 0.29
SAMM50-201ENST00000350028 CWH43Q9H720 699 aa16.89■□□□□ 0.29
SAMM50-201ENST00000350028 SLC2A6Q9UGQ3 507 aa16.89■□□□□ 0.29
SAMM50-201ENST00000350028 MIA3Q5JRA6 1907 aa16.88■□□□□ 0.29
SAMM50-201ENST00000350028 E2F8A0AVK6 867 aa16.88■□□□□ 0.29
SAMM50-201ENST00000350028 TMEM114B3SHH9 223 aa16.88■□□□□ 0.29
SAMM50-201ENST00000350028 G3V2L1 256 aa16.88■□□□□ 0.29
SAMM50-201ENST00000350028 F7P08709 466 aaPredicted RBP16.88■□□□□ 0.29
SAMM50-201ENST00000350028 SLC8A1P32418 973 aa16.88■□□□□ 0.29
SAMM50-201ENST00000350028 SLC11A2P49281 568 aa16.88■□□□□ 0.29
SAMM50-201ENST00000350028 KCNQ1P51787 676 aa16.88■□□□□ 0.29
SAMM50-201ENST00000350028 ATN1P54259 1190 aaPredicted RBP16.88■□□□□ 0.29
SAMM50-201ENST00000350028 PRKAA2P54646 552 aa16.88■□□□□ 0.29
SAMM50-201ENST00000350028 MAXP61244 160 aa16.88■□□□□ 0.29
SAMM50-201ENST00000350028 IRF9Q00978 393 aa16.88■□□□□ 0.29
SAMM50-201ENST00000350028 IKBKEQ14164 716 aa16.88■□□□□ 0.29
SAMM50-201ENST00000350028 HECTD3Q5T447 861 aa16.88■□□□□ 0.29
SAMM50-201ENST00000350028 KIAA1841Q6NSI8 718 aa16.88■□□□□ 0.29
SAMM50-201ENST00000350028 LIN28BQ6ZN17 250 aaKnown RBP eCLIP16.88■□□□□ 0.294e-24■■■■■ 43.3
SAMM50-201ENST00000350028 CIR1Q86X95 450 aaPredicted RBP16.88■□□□□ 0.29
SAMM50-201ENST00000350028 ACVR1CQ8NER5 493 aa16.88■□□□□ 0.29
SAMM50-201ENST00000350028 ARRDC2Q8TBH0 407 aa16.88■□□□□ 0.29
SAMM50-201ENST00000350028 TOX2Q96NM4 488 aa16.88■□□□□ 0.29
SAMM50-201ENST00000350028 MAGEH1Q9H213 219 aa16.88■□□□□ 0.29
SAMM50-201ENST00000350028 MARCOQ9UEW3 520 aaPredicted RBP16.88■□□□□ 0.29
SAMM50-201ENST00000350028 SORCS3Q9UPU3 1222 aa16.88■□□□□ 0.29
SAMM50-201ENST00000350028 MYLKQ15746 1914 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms