RNA–Protein interactions for RNA: ENST00000347401.7

COL6A3-202, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,625 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-202ENST00000347401 AASSQ9UDR5 926 aa13.44□□□□□ -0.26
COL6A3-202ENST00000347401 MAN2B2Q9Y2E5 1009 aa13.44□□□□□ -0.26
COL6A3-202ENST00000347401 H0YJX3 145 aa13.44□□□□□ -0.26
COL6A3-202ENST00000347401 ELAVL2Q12926 359 aaKnown RBP13.44□□□□□ -0.26
COL6A3-202ENST00000347401 ITCHQ96J02 903 aa13.44□□□□□ -0.26
COL6A3-202ENST00000347401 VPS4AQ9UN37 437 aa13.44□□□□□ -0.26
COL6A3-202ENST00000347401 SLC22A1O15245 554 aa13.44□□□□□ -0.26
COL6A3-202ENST00000347401 GRAP2O75791 330 aa13.44□□□□□ -0.26
COL6A3-202ENST00000347401 LYNP07948 512 aa13.44□□□□□ -0.26
COL6A3-202ENST00000347401 TXNP10599 105 aaKnown RBP13.44□□□□□ -0.26
COL6A3-202ENST00000347401 PEX6Q13608 980 aa13.44□□□□□ -0.26
COL6A3-202ENST00000347401 CSHL1Q14406 222 aa13.44□□□□□ -0.26
COL6A3-202ENST00000347401 LCN1P1Q5VSP4 162 aa13.44□□□□□ -0.26
COL6A3-202ENST00000347401 NAT14Q8WUY8 206 aa13.44□□□□□ -0.26
COL6A3-202ENST00000347401 YTHDF1Q9BYJ9 559 aaKnown RBP13.44□□□□□ -0.26
COL6A3-202ENST00000347401 GGA3Q9NZ52 723 aa13.44□□□□□ -0.26
COL6A3-202ENST00000347401 BCS1LQ9Y276 419 aa13.44□□□□□ -0.26
COL6A3-202ENST00000347401 CNTD1Q8N815 330 aa13.44□□□□□ -0.26
COL6A3-202ENST00000347401 LBHD1Q9BQE6 289 aaPredicted RBP13.44□□□□□ -0.26
COL6A3-202ENST00000347401 ITGA10O75578 1167 aa13.44□□□□□ -0.26
COL6A3-202ENST00000347401 ACAP2Q15057 778 aa13.44□□□□□ -0.26
COL6A3-202ENST00000347401 MFSD7Q6UXD7 560 aa13.44□□□□□ -0.26
COL6A3-202ENST00000347401 PCDHGB3Q9Y5G1 929 aa13.44□□□□□ -0.26
COL6A3-202ENST00000347401 NUP205Q92621 2012 aa13.44□□□□□ -0.26
COL6A3-202ENST00000347401 TULP2O00295 520 aa13.43□□□□□ -0.26
COL6A3-202ENST00000347401 SIN3BO75182 1162 aa13.43□□□□□ -0.26
COL6A3-202ENST00000347401 AIF1P55008 147 aa13.43□□□□□ -0.26
COL6A3-202ENST00000347401 SRP54P61011 504 aaKnown RBP13.43□□□□□ -0.26
COL6A3-202ENST00000347401 AP1S1P61966 158 aa13.43□□□□□ -0.26
COL6A3-202ENST00000347401 FSCN1Q16658 493 aaKnown RBP13.43□□□□□ -0.26
COL6A3-202ENST00000347401 FBXO43Q4G163 708 aa13.43□□□□□ -0.26
COL6A3-202ENST00000347401 ZNF571Q7Z3V5 609 aaPredicted RBP13.43□□□□□ -0.26
COL6A3-202ENST00000347401 DNAJB8Q8NHS0 232 aa13.43□□□□□ -0.26
COL6A3-202ENST00000347401 CCDC3Q9BQI4 270 aa13.43□□□□□ -0.26
COL6A3-202ENST00000347401 LACRTQ9GZZ8 138 aa13.43□□□□□ -0.26
COL6A3-202ENST00000347401 TSR3Q9UJK0 312 aaKnown RBP13.43□□□□□ -0.26
COL6A3-202ENST00000347401 RGS10O43665 173 aa13.43□□□□□ -0.26
COL6A3-202ENST00000347401 CBX6O95503 412 aa13.43□□□□□ -0.26
COL6A3-202ENST00000347401 ATP6V0D1P61421 351 aa13.43□□□□□ -0.26
COL6A3-202ENST00000347401 PLCZ1Q86YW0 608 aa13.43□□□□□ -0.26
COL6A3-202ENST00000347401 FAIM2Q9BWQ8 316 aa13.43□□□□□ -0.26
COL6A3-202ENST00000347401 ACSS3Q9H6R3 686 aa13.43□□□□□ -0.26
COL6A3-202ENST00000347401 TAS2R7Q9NYW3 318 aa13.43□□□□□ -0.26
COL6A3-202ENST00000347401 RCOR3Q9P2K3 495 aaPredicted RBP13.43□□□□□ -0.26
COL6A3-202ENST00000347401 ZBTB14O43829 449 aa13.43□□□□□ -0.26
COL6A3-202ENST00000347401 IDH2P48735 452 aaKnown RBP13.43□□□□□ -0.26
COL6A3-202ENST00000347401 ALDH3A2P51648 485 aa13.43□□□□□ -0.26
COL6A3-202ENST00000347401 FOXO4P98177 505 aa13.43□□□□□ -0.26
COL6A3-202ENST00000347401 CBFBQ13951 182 aa13.43□□□□□ -0.26
COL6A3-202ENST00000347401 DDI2Q5TDH0 399 aa13.43□□□□□ -0.26
COL6A3-202ENST00000347401 OLFML2AQ68BL7 652 aa13.43□□□□□ -0.26
COL6A3-202ENST00000347401 MPZL3Q6UWV2 235 aa13.43□□□□□ -0.26
COL6A3-202ENST00000347401 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP13.43□□□□□ -0.26
COL6A3-202ENST00000347401 NIPA1Q7RTP0 329 aa13.43□□□□□ -0.26
COL6A3-202ENST00000347401 SLCO6A1Q86UG4 719 aa13.43□□□□□ -0.26
COL6A3-202ENST00000347401 SERPINB11Q96P15 392 aa13.43□□□□□ -0.26
COL6A3-202ENST00000347401 BBS4Q96RK4 519 aa13.43□□□□□ -0.26
COL6A3-202ENST00000347401 HGH1Q9BTY7 390 aa13.43□□□□□ -0.26
COL6A3-202ENST00000347401 TLR8Q9NR97 1041 aaKnown RBP13.43□□□□□ -0.26
COL6A3-202ENST00000347401 SLC28A1O00337 649 aa13.43□□□□□ -0.26
COL6A3-202ENST00000347401 TM7SF2O76062 418 aa13.43□□□□□ -0.26
COL6A3-202ENST00000347401 COL6A2P12110 1019 aa13.43□□□□□ -0.26
COL6A3-202ENST00000347401 GABRB2P47870 512 aa13.43□□□□□ -0.26
COL6A3-202ENST00000347401 PSME3P61289 254 aa13.43□□□□□ -0.26
COL6A3-202ENST00000347401 PPM1LQ5SGD2 360 aa13.43□□□□□ -0.26
COL6A3-202ENST00000347401 SPATA19Q7Z5L4 167 aa13.43□□□□□ -0.26
COL6A3-202ENST00000347401 POLR1DQ9Y2S0 133 aa13.43□□□□□ -0.26
COL6A3-202ENST00000347401 ASXL3Q9C0F0 2248 aa13.43□□□□□ -0.26
COL6A3-202ENST00000347401 A0A0A0MRY4 1105 aa13.43□□□□□ -0.26
COL6A3-202ENST00000347401 LTA4HP09960 611 aaKnown RBP13.43□□□□□ -0.26
COL6A3-202ENST00000347401 TAF5Q15542 800 aa13.43□□□□□ -0.26
COL6A3-202ENST00000347401 SLC47A2Q86VL8 602 aa13.43□□□□□ -0.26
COL6A3-202ENST00000347401 SPATA13Q96N96 652 aa13.43□□□□□ -0.26
COL6A3-202ENST00000347401 KCNH7Q9NS40 1196 aa13.43□□□□□ -0.26
COL6A3-202ENST00000347401 CISHQ9NSE2 258 aa13.43□□□□□ -0.26
COL6A3-202ENST00000347401 FGRP09769 529 aa13.43□□□□□ -0.26
COL6A3-202ENST00000347401 ITIH5Q86UX2 942 aa13.43□□□□□ -0.26
COL6A3-202ENST00000347401 KAT5Q92993 513 aa13.43□□□□□ -0.26
COL6A3-202ENST00000347401 ITFG2Q969R8 447 aa13.43□□□□□ -0.26
COL6A3-202ENST00000347401 CAB39LQ9H9S4 337 aa13.43□□□□□ -0.26
COL6A3-202ENST00000347401 PAK6Q9NQU5 681 aaPredicted RBP13.43□□□□□ -0.26
COL6A3-202ENST00000347401 TAS2R1Q9NYW7 299 aa13.43□□□□□ -0.26
COL6A3-202ENST00000347401 DRD4P21917 467 aa13.43□□□□□ -0.26
COL6A3-202ENST00000347401 PTPN11Q06124 597 aaPredicted RBP13.43□□□□□ -0.26
COL6A3-202ENST00000347401 KCTD21Q4G0X4 260 aa13.43□□□□□ -0.26
COL6A3-202ENST00000347401 ARHGAP36Q6ZRI8 547 aa13.43□□□□□ -0.26
COL6A3-202ENST00000347401 MTSS1LQ765P7 747 aa13.43□□□□□ -0.26
COL6A3-202ENST00000347401 ROPN1LQ96C74 230 aa13.43□□□□□ -0.26
COL6A3-202ENST00000347401 NRXN1Q9ULB1 1477 aa13.42□□□□□ -0.26
COL6A3-202ENST00000347401 RPS6KA4O75676 772 aa13.42□□□□□ -0.26
COL6A3-202ENST00000347401 STAU1O95793 577 aaKnown RBP13.42□□□□□ -0.26
COL6A3-202ENST00000347401 PRLP01236 227 aa13.42□□□□□ -0.26
COL6A3-202ENST00000347401 ITGB3P05106 788 aa13.42□□□□□ -0.26
COL6A3-202ENST00000347401 CYP2A6P11509 494 aaPredicted RBP13.42□□□□□ -0.26
COL6A3-202ENST00000347401 RPA3P35244 121 aaPredicted RBP13.42□□□□□ -0.26
COL6A3-202ENST00000347401 EIF2S3LQ2VIR3 472 aaKnown RBP13.42□□□□□ -0.26
COL6A3-202ENST00000347401 ATG4AQ8WYN0 398 aa13.42□□□□□ -0.26
COL6A3-202ENST00000347401 TBL1YQ9BQ87 522 aa13.42□□□□□ -0.26
COL6A3-202ENST00000347401 DDX43Q9NXZ2 648 aaKnown RBP13.42□□□□□ -0.26
COL6A3-202ENST00000347401 KBTBD13C9JR72 458 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms