RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 SPANXN2Q5MJ10 180 aa12.75□□□□□ -0.37
SDC3-201ENST00000336798 PRKD2Q9BZL6 878 aa12.75□□□□□ -0.37
SDC3-201ENST00000336798 PTGFRNQ9P2B2 879 aa12.75□□□□□ -0.37
SDC3-201ENST00000336798 CIDEBQ9UHD4 219 aa12.75□□□□□ -0.37
SDC3-201ENST00000336798 C15orf41Q9Y2V0 281 aa12.75□□□□□ -0.37
SDC3-201ENST00000336798 SF3B1O75533 1304 aaKnown RBP eCLIP12.74□□□□□ -0.373e-6■■■■■ 87.6
SDC3-201ENST00000336798 CLK3P49761 638 aaKnown RBP12.74□□□□□ -0.37
SDC3-201ENST00000336798 HNMTP50135 292 aa12.74□□□□□ -0.37
SDC3-201ENST00000336798 ERVK-9P63128 1117 aa12.74□□□□□ -0.37
SDC3-201ENST00000336798 CAMK1Q14012 370 aa12.74□□□□□ -0.37
SDC3-201ENST00000336798 DPYSL3Q14195 570 aa12.74□□□□□ -0.37
SDC3-201ENST00000336798 TP53INP1Q96A56 240 aa12.74□□□□□ -0.37
SDC3-201ENST00000336798 MTMR8Q96EF0 704 aa12.74□□□□□ -0.37
SDC3-201ENST00000336798 C1orf50Q9BV19 199 aa12.74□□□□□ -0.37
SDC3-201ENST00000336798 OXCT2Q9BYC2 517 aaPredicted RBP12.74□□□□□ -0.37
SDC3-201ENST00000336798 ABCG4Q9H172 646 aa12.74□□□□□ -0.37
SDC3-201ENST00000336798 CHST7Q9NS84 486 aa12.74□□□□□ -0.37
SDC3-201ENST00000336798 ETNK2Q9NVF9 386 aa12.74□□□□□ -0.37
SDC3-201ENST00000336798 SPATA31A5Q5VU36 1347 aa12.74□□□□□ -0.37
SDC3-201ENST00000336798 SPATA31A7Q8IWB4 1347 aa12.74□□□□□ -0.37
SDC3-201ENST00000336798 CNTNAP4Q9C0A0 1308 aa12.74□□□□□ -0.37
SDC3-201ENST00000336798 MCIDASD6RGH6 385 aa12.74□□□□□ -0.37
SDC3-201ENST00000336798 H3BQF6 201 aa12.74□□□□□ -0.37
SDC3-201ENST00000336798 KPNA4O00629 521 aaPredicted RBP12.74□□□□□ -0.37
SDC3-201ENST00000336798 PTPN1P18031 435 aaKnown RBP12.74□□□□□ -0.37
SDC3-201ENST00000336798 RARRES1P49788 294 aa12.74□□□□□ -0.37
SDC3-201ENST00000336798 DGUOKQ16854 277 aa12.74□□□□□ -0.37
SDC3-201ENST00000336798 DEF8Q6ZN54 512 aa12.74□□□□□ -0.37
SDC3-201ENST00000336798 RBM43Q6ZSC3 357 aaKnown RBP12.74□□□□□ -0.37
SDC3-201ENST00000336798 OFCC1Q8IZS5 231 aa12.74□□□□□ -0.37
SDC3-201ENST00000336798 DHRSXQ8N5I4 330 aa12.74□□□□□ -0.37
SDC3-201ENST00000336798 ENGASEQ8NFI3 743 aa12.74□□□□□ -0.37
SDC3-201ENST00000336798 ZNF75CPQ92670 426 aaPredicted RBP12.74□□□□□ -0.37
SDC3-201ENST00000336798 GULP1Q9UBP9 304 aa12.74□□□□□ -0.37
SDC3-201ENST00000336798 QRICH2Q9H0J4 1663 aa12.74□□□□□ -0.37
SDC3-201ENST00000336798 MROH7Q68CQ1 1323 aa12.74□□□□□ -0.37
SDC3-201ENST00000336798 CLDN5O00501 218 aa12.74□□□□□ -0.37
SDC3-201ENST00000336798 SCAMP1O15126 338 aa12.74□□□□□ -0.37
SDC3-201ENST00000336798 CD3EAPO15446 510 aaKnown RBP12.74□□□□□ -0.37
SDC3-201ENST00000336798 MTRF1O75570 445 aaKnown RBP12.74□□□□□ -0.37
SDC3-201ENST00000336798 ANXA5P08758 320 aa12.74□□□□□ -0.37
SDC3-201ENST00000336798 WARSP23381 471 aaKnown RBP12.74□□□□□ -0.37
SDC3-201ENST00000336798 BUD31P41223 144 aaPredicted RBP12.74□□□□□ -0.37
SDC3-201ENST00000336798 RPL38P63173 70 aaKnown RBP12.74□□□□□ -0.37
SDC3-201ENST00000336798 PUDPQ08623 228 aa12.74□□□□□ -0.37
SDC3-201ENST00000336798 CBFBQ13951 182 aa12.74□□□□□ -0.37
SDC3-201ENST00000336798 FAM183BPQ6ZVS7 135 aa12.74□□□□□ -0.37
SDC3-201ENST00000336798 QKIQ96PU8 341 aaKnown RBP eCLIP12.74□□□□□ -0.37
SDC3-201ENST00000336798 NRDE2Q9H7Z3 1164 aa12.74□□□□□ -0.37
SDC3-201ENST00000336798 COPG2Q9UBF2 871 aa12.74□□□□□ -0.37
SDC3-201ENST00000336798 GNPTGQ9UJJ9 305 aa12.74□□□□□ -0.37
SDC3-201ENST00000336798 ABCC3O15438 1527 aa12.74□□□□□ -0.37
SDC3-201ENST00000336798 CYP1A1P04798 512 aaPredicted RBP12.74□□□□□ -0.37
SDC3-201ENST00000336798 ANXA6P08133 673 aa12.74□□□□□ -0.37
SDC3-201ENST00000336798 ME2P23368 584 aa12.74□□□□□ -0.37
SDC3-201ENST00000336798 AKT2P31751 481 aa12.74□□□□□ -0.37
SDC3-201ENST00000336798 NDUFV1P49821 464 aa12.74□□□□□ -0.37
SDC3-201ENST00000336798 PTENP60484 403 aa12.74□□□□□ -0.37
SDC3-201ENST00000336798 SKP1P63208 163 aa12.74□□□□□ -0.37
SDC3-201ENST00000336798 PYDC2Q56P42 97 aa12.74□□□□□ -0.37
SDC3-201ENST00000336798 APTXQ7Z2E3 356 aaKnown RBP12.74□□□□□ -0.37
SDC3-201ENST00000336798 ZNF554Q86TJ5 538 aa12.74□□□□□ -0.37
SDC3-201ENST00000336798 PTGR2Q8N8N7 351 aaPredicted RBP12.74□□□□□ -0.37
SDC3-201ENST00000336798 BHLHE41Q9C0J9 482 aaPredicted RBP12.74□□□□□ -0.37
SDC3-201ENST00000336798 CRISPLD1Q9H336 500 aa12.74□□□□□ -0.37
SDC3-201ENST00000336798 ASAH2Q9NR71 780 aa12.74□□□□□ -0.37
SDC3-201ENST00000336798 CDH9Q9ULB4 789 aa12.74□□□□□ -0.37
SDC3-201ENST00000336798 MYRFQ9Y2G1 1151 aa12.74□□□□□ -0.37
SDC3-201ENST00000336798 A2ML1A8K2U0 1454 aa12.74□□□□□ -0.37
SDC3-201ENST00000336798 MBD5Q9P267 1494 aa12.74□□□□□ -0.37
SDC3-201ENST00000336798 MANSC4A6NHS7 340 aaPredicted RBP12.74□□□□□ -0.37
SDC3-201ENST00000336798 DDX3XO00571 662 aaKnown RBP eCLIP12.74□□□□□ -0.37
SDC3-201ENST00000336798 NR2C2P49116 596 aa12.74□□□□□ -0.37
SDC3-201ENST00000336798 STXBP1P61764 594 aaKnown RBP12.74□□□□□ -0.37
SDC3-201ENST00000336798 PGBD2Q6P3X8 592 aa12.74□□□□□ -0.37
SDC3-201ENST00000336798 EXOC3L1Q86VI1 746 aa12.74□□□□□ -0.37
SDC3-201ENST00000336798 TMPRSS6Q8IU80 811 aa12.74□□□□□ -0.37
SDC3-201ENST00000336798 HDAC7Q8WUI4 952 aa12.74□□□□□ -0.37
SDC3-201ENST00000336798 DNMT3LQ9UJW3 386 aa12.74□□□□□ -0.37
SDC3-201ENST00000336798 OPLAHO14841 1288 aa12.73□□□□□ -0.37
SDC3-201ENST00000336798 FFAR2O15552 330 aa12.73□□□□□ -0.37
SDC3-201ENST00000336798 LGALS2P05162 132 aa12.73□□□□□ -0.37
SDC3-201ENST00000336798 CYP4B1P13584 511 aa12.73□□□□□ -0.37
SDC3-201ENST00000336798 ADRA1DP25100 572 aa12.73□□□□□ -0.37
SDC3-201ENST00000336798 SNRPD1P62314 119 aaKnown RBP12.73□□□□□ -0.37
SDC3-201ENST00000336798 MYBPC2Q14324 1141 aa12.73□□□□□ -0.37
SDC3-201ENST00000336798 OLFML2AQ68BL7 652 aa12.73□□□□□ -0.37
SDC3-201ENST00000336798 SETD9Q8NE22 299 aa12.73□□□□□ -0.37
SDC3-201ENST00000336798 FUT8Q9BYC5 575 aa12.73□□□□□ -0.37
SDC3-201ENST00000336798 NUAK2Q9H093 628 aa12.73□□□□□ -0.37
SDC3-201ENST00000336798 KBTBD4Q9NVX7 518 aa12.73□□□□□ -0.37
SDC3-201ENST00000336798 MCUBQ9NWR8 336 aa12.73□□□□□ -0.37
SDC3-201ENST00000336798 STARD13Q9Y3M8 1113 aa12.73□□□□□ -0.37
SDC3-201ENST00000336798 ABCA8O94911 1581 aa12.73□□□□□ -0.37
SDC3-201ENST00000336798 SSNA1O43805 119 aa12.73□□□□□ -0.37
SDC3-201ENST00000336798 LINC00032P0C843 101 aa12.73□□□□□ -0.37
SDC3-201ENST00000336798 ITPKBP27987 946 aa12.73□□□□□ -0.37
SDC3-201ENST00000336798 GRIA3P42263 894 aa12.73□□□□□ -0.37
SDC3-201ENST00000336798 WASP42768 502 aa12.73□□□□□ -0.37
SDC3-201ENST00000336798 ITGADQ13349 1161 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms