RNA–Protein interactions for RNA: ENST00000331163.10

PDGFB-201, Transcript of platelet derived growth factor subunit B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDGFB, Length 3,497 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFB-201ENST00000331163 ZDHHC6Q9H6R6 413 aa16.1■□□□□ 0.17
PDGFB-201ENST00000331163 USP29Q9HBJ7 922 aa16.1■□□□□ 0.17
PDGFB-201ENST00000331163 SCUBE2Q9NQ36 999 aa16.1■□□□□ 0.17
PDGFB-201ENST00000331163 BATF3Q9NR55 127 aa16.1■□□□□ 0.17
PDGFB-201ENST00000331163 ANK1P16157 1881 aa16.1■□□□□ 0.17
PDGFB-201ENST00000331163 SRRM3A6NNA2 597 aaPredicted RBP16.1■□□□□ 0.17
PDGFB-201ENST00000331163 MAGEA11P43364 429 aa16.1■□□□□ 0.17
PDGFB-201ENST00000331163 GNA12Q03113 381 aa16.1■□□□□ 0.17
PDGFB-201ENST00000331163 RBBP5Q15291 538 aaKnown RBP16.1■□□□□ 0.17
PDGFB-201ENST00000331163 ADGRF1Q5T601 910 aa16.1■□□□□ 0.17
PDGFB-201ENST00000331163 ZCCHC9Q8N567 271 aaKnown RBP16.1■□□□□ 0.17
PDGFB-201ENST00000331163 ZSCAN18Q8TBC5 510 aaPredicted RBP16.1■□□□□ 0.17
PDGFB-201ENST00000331163 PTPRN2Q92932 1015 aa16.1■□□□□ 0.17
PDGFB-201ENST00000331163 ERP27Q96DN0 273 aa16.1■□□□□ 0.17
PDGFB-201ENST00000331163 NAF1Q96HR8 494 aaKnown RBP16.1■□□□□ 0.17
PDGFB-201ENST00000331163 CYTH2Q99418 400 aa16.1■□□□□ 0.17
PDGFB-201ENST00000331163 GPR63Q9BZJ6 419 aa16.1■□□□□ 0.17
PDGFB-201ENST00000331163 NKX1-2Q9UD57 310 aaPredicted RBP16.1■□□□□ 0.17
PDGFB-201ENST00000331163 SSX2IPQ9Y2D8 614 aa16.1■□□□□ 0.17
PDGFB-201ENST00000331163 OPHN1O60890 802 aa16.1■□□□□ 0.17
PDGFB-201ENST00000331163 CSKP41240 450 aa16.1■□□□□ 0.17
PDGFB-201ENST00000331163 LY6G5CQ5SRR4 150 aa16.1■□□□□ 0.17
PDGFB-201ENST00000331163 TMEM25Q86YD3 366 aa16.1■□□□□ 0.17
PDGFB-201ENST00000331163 ZNF778Q96MU6 729 aa16.1■□□□□ 0.17
PDGFB-201ENST00000331163 SH3GL3Q99963 347 aa16.1■□□□□ 0.17
PDGFB-201ENST00000331163 FAM96AQ9H5X1 160 aa16.1■□□□□ 0.17
PDGFB-201ENST00000331163 A0A1W2PPM1 405 aa16.09■□□□□ 0.17
PDGFB-201ENST00000331163 C2orf71A6NGG8 1288 aa16.09■□□□□ 0.17
PDGFB-201ENST00000331163 KPNA3O00505 521 aaPredicted RBP16.09■□□□□ 0.17
PDGFB-201ENST00000331163 CYP1B1Q16678 543 aa16.09■□□□□ 0.17
PDGFB-201ENST00000331163 MUM1Q2TAK8 710 aa16.09■□□□□ 0.17
PDGFB-201ENST00000331163 FSCBQ5H9T9 825 aa16.09■□□□□ 0.17
PDGFB-201ENST00000331163 PRPF39Q86UA1 669 aaKnown RBP16.09■□□□□ 0.17
PDGFB-201ENST00000331163 DDX50Q9BQ39 737 aaKnown RBP16.09■□□□□ 0.17
PDGFB-201ENST00000331163 MARCOQ9UEW3 520 aaPredicted RBP16.09■□□□□ 0.17
PDGFB-201ENST00000331163 OR51F1A6NGY5 319 aa16.09■□□□□ 0.17
PDGFB-201ENST00000331163 SLC9A4Q6AI14 798 aa16.09■□□□□ 0.17
PDGFB-201ENST00000331163 TRMT10CQ7L0Y3 403 aaKnown RBP16.09■□□□□ 0.17
PDGFB-201ENST00000331163 NUDCD1Q96RS6 583 aa16.09■□□□□ 0.17
PDGFB-201ENST00000331163 MYOCQ99972 504 aa16.09■□□□□ 0.17
PDGFB-201ENST00000331163 PITPNM3Q9BZ71 974 aa16.09■□□□□ 0.17
PDGFB-201ENST00000331163 CCDC68Q9H2F9 335 aa16.09■□□□□ 0.17
PDGFB-201ENST00000331163 BACE2Q9Y5Z0 518 aa16.09■□□□□ 0.17
PDGFB-201ENST00000331163 VNN2O95498 520 aa16.09■□□□□ 0.17
PDGFB-201ENST00000331163 POLBP06746 335 aa16.09■□□□□ 0.17
PDGFB-201ENST00000331163 GSTA1P08263 222 aa16.09■□□□□ 0.17
PDGFB-201ENST00000331163 SERPINF2P08697 491 aa16.09■□□□□ 0.17
PDGFB-201ENST00000331163 SMARCB1Q12824 385 aa16.09■□□□□ 0.17
PDGFB-201ENST00000331163 SETDB1Q15047 1291 aa16.09■□□□□ 0.17
PDGFB-201ENST00000331163 ZRANB3Q5FWF4 1079 aa16.09■□□□□ 0.17
PDGFB-201ENST00000331163 LGSNQ5TDP6 509 aa16.09■□□□□ 0.17
PDGFB-201ENST00000331163 NAPEPLDQ6IQ20 393 aa16.09■□□□□ 0.17
PDGFB-201ENST00000331163 LRRC6Q86X45 466 aa16.09■□□□□ 0.17
PDGFB-201ENST00000331163 FAM124BQ9H5Z6 455 aaPredicted RBP16.09■□□□□ 0.17
PDGFB-201ENST00000331163 TDP1Q9NUW8 608 aa16.09■□□□□ 0.17
PDGFB-201ENST00000331163 CLIC5Q9NZA1 410 aa16.09■□□□□ 0.17
PDGFB-201ENST00000331163 YBX2Q9Y2T7 364 aaKnown RBP16.09■□□□□ 0.17
PDGFB-201ENST00000331163 DPPA5A6NC42 116 aa16.08■□□□□ 0.16
PDGFB-201ENST00000331163 LEFTY2O00292 366 aa16.08■□□□□ 0.16
PDGFB-201ENST00000331163 HMGA1P17096 107 aaKnown RBP16.08■□□□□ 0.16
PDGFB-201ENST00000331163 CCR2P41597 374 aa16.08■□□□□ 0.16
PDGFB-201ENST00000331163 DNAJC3Q13217 504 aa16.08■□□□□ 0.16
PDGFB-201ENST00000331163 CES5AQ6NT32 575 aa16.08■□□□□ 0.16
PDGFB-201ENST00000331163 CENPIQ92674 756 aaPredicted RBP16.08■□□□□ 0.16
PDGFB-201ENST00000331163 ALKBH8Q96BT7 664 aaKnown RBP16.08■□□□□ 0.16
PDGFB-201ENST00000331163 QKIQ96PU8 341 aaKnown RBP eCLIP16.08■□□□□ 0.16
PDGFB-201ENST00000331163 EPB41L4BQ9H329 900 aa16.08■□□□□ 0.16
PDGFB-201ENST00000331163 IRAK4Q9NWZ3 460 aa16.08■□□□□ 0.16
PDGFB-201ENST00000331163 ARL2BPQ9Y2Y0 163 aa16.08■□□□□ 0.16
PDGFB-201ENST00000331163 TCRBV9S1A1TA0A576 114 aa16.08■□□□□ 0.16
PDGFB-201ENST00000331163 MYLK4Q86YV6 388 aaPredicted RBP16.08■□□□□ 0.16
PDGFB-201ENST00000331163 EGFL6Q8IUX8 553 aa16.08■□□□□ 0.16
PDGFB-201ENST00000331163 PSTKQ8IV42 348 aaKnown RBP16.08■□□□□ 0.16
PDGFB-201ENST00000331163 LMNTD2Q8IXW0 634 aa16.08■□□□□ 0.16
PDGFB-201ENST00000331163 CYP4X1Q8N118 509 aa16.08■□□□□ 0.16
PDGFB-201ENST00000331163 SPOCK2Q92563 424 aa16.08■□□□□ 0.16
PDGFB-201ENST00000331163 KXD1Q9BQD3 176 aa16.08■□□□□ 0.16
PDGFB-201ENST00000331163 CAB39LQ9H9S4 337 aa16.08■□□□□ 0.16
PDGFB-201ENST00000331163 KCTD3Q9Y597 815 aa16.08■□□□□ 0.16
PDGFB-201ENST00000331163 LRRC37A2A6NM11 1700 aa16.08■□□□□ 0.16
PDGFB-201ENST00000331163 FGF10O15520 208 aaPredicted RBP16.07■□□□□ 0.16
PDGFB-201ENST00000331163 KPNA1P52294 538 aaPredicted RBP16.07■□□□□ 0.16
PDGFB-201ENST00000331163 COL9A2Q14055 689 aaPredicted RBP16.07■□□□□ 0.16
PDGFB-201ENST00000331163 C16orf46Q6P387 395 aa16.07■□□□□ 0.16
PDGFB-201ENST00000331163 CAMK1DQ8IU85 385 aa16.07■□□□□ 0.16
PDGFB-201ENST00000331163 NDUFAF2Q8N183 169 aa16.07■□□□□ 0.16
PDGFB-201ENST00000331163 ZSWIM3Q96MP5 696 aa16.07■□□□□ 0.16
PDGFB-201ENST00000331163 NDNQ99608 321 aa16.07■□□□□ 0.16
PDGFB-201ENST00000331163 DLGAP2Q9P1A6 1054 aa16.07■□□□□ 0.16
PDGFB-201ENST00000331163 CDH16O75309 829 aa16.07■□□□□ 0.16
PDGFB-201ENST00000331163 SMNDC1O75940 238 aaKnown RBP eCLIP16.07■□□□□ 0.16
PDGFB-201ENST00000331163 PRAMEF12O95522 483 aa16.07■□□□□ 0.16
PDGFB-201ENST00000331163 RHOQP17081 205 aa16.07■□□□□ 0.16
PDGFB-201ENST00000331163 PAX3P23760 479 aa16.07■□□□□ 0.16
PDGFB-201ENST00000331163 WASHC5Q12768 1159 aa16.07■□□□□ 0.16
PDGFB-201ENST00000331163 MRPL58Q14197 206 aaKnown RBP16.07■□□□□ 0.16
PDGFB-201ENST00000331163 LBRQ14739 615 aaKnown RBP16.07■□□□□ 0.16
PDGFB-201ENST00000331163 PARP6Q2NL67 630 aa16.07■□□□□ 0.16
PDGFB-201ENST00000331163 STRA8Q7Z7C7 330 aa16.07■□□□□ 0.16
PDGFB-201ENST00000331163 DTX3LQ8TDB6 740 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms