RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 ZNF180Q9UJW8 692 aa18.67■□□□□ 0.58
USP39-201ENST00000323701 RWDD3Q9Y3V2 267 aa18.67■□□□□ 0.58
USP39-201ENST00000323701 FAM169AQ9Y6X4 670 aa18.67■□□□□ 0.58
USP39-201ENST00000323701 MIA3Q5JRA6 1907 aa18.67■□□□□ 0.58
USP39-201ENST00000323701 MYOFQ9NZM1 2061 aa18.67■□□□□ 0.58
USP39-201ENST00000323701 A6NNZ2 444 aa18.66■□□□□ 0.58
USP39-201ENST00000323701 PRPF4O43172 522 aaKnown RBP eCLIP18.66■□□□□ 0.58
USP39-201ENST00000323701 PYGBP11216 843 aa18.66■□□□□ 0.58
USP39-201ENST00000323701 EPHA5P54756 1037 aa18.66■□□□□ 0.58
USP39-201ENST00000323701 OXCT1P55809 520 aa18.66■□□□□ 0.58
USP39-201ENST00000323701 QPCTQ16769 361 aa18.66■□□□□ 0.58
USP39-201ENST00000323701 TUBB8Q3ZCM7 444 aa18.66■□□□□ 0.58
USP39-201ENST00000323701 GPR158Q5T848 1215 aa18.66■□□□□ 0.58
USP39-201ENST00000323701 TTC39BQ5VTQ0 682 aaPredicted RBP18.66■□□□□ 0.58
USP39-201ENST00000323701 BANPQ8N9N5 519 aa18.66■□□□□ 0.58
USP39-201ENST00000323701 SERBP1Q8NC51 408 aaKnown RBP eCLIP18.66■□□□□ 0.58
USP39-201ENST00000323701 NSMCE1Q8WV22 266 aa18.66■□□□□ 0.58
USP39-201ENST00000323701 MUC3BQ9H195 1237 aa18.66■□□□□ 0.58
USP39-201ENST00000323701 IQANK1A0A1B0GTG1 560 aa18.66■□□□□ 0.58
USP39-201ENST00000323701 H0Y626 953 aa18.66■□□□□ 0.58
USP39-201ENST00000323701 RFPL1O75677 317 aa18.66■□□□□ 0.58
USP39-201ENST00000323701 LATS1O95835 1130 aa18.66■□□□□ 0.58
USP39-201ENST00000323701 ZNF235Q14590 738 aa18.66■□□□□ 0.58
USP39-201ENST00000323701 HSP90AA5PQ58FG0 334 aa18.66■□□□□ 0.58
USP39-201ENST00000323701 TPGS1Q6ZTW0 290 aa18.66■□□□□ 0.58
USP39-201ENST00000323701 MARK2Q7KZI7 788 aaKnown RBP18.66■□□□□ 0.58
USP39-201ENST00000323701 RASSF3Q86WH2 238 aa18.66■□□□□ 0.58
USP39-201ENST00000323701 ZSWIM3Q96MP5 696 aa18.66■□□□□ 0.58
USP39-201ENST00000323701 CCT8L2Q96SF2 557 aa18.66■□□□□ 0.58
USP39-201ENST00000323701 SENP1Q9P0U3 644 aa18.66■□□□□ 0.58
USP39-201ENST00000323701 OR51B4Q9Y5P0 310 aa18.66■□□□□ 0.58
USP39-201ENST00000323701 GMNCA6NCL1 334 aa18.65■□□□□ 0.58
USP39-201ENST00000323701 ZMPSTE24O75844 475 aa18.65■□□□□ 0.58
USP39-201ENST00000323701 MT-ND3P03897 115 aa18.65■□□□□ 0.58
USP39-201ENST00000323701 CA4P22748 312 aa18.65■□□□□ 0.58
USP39-201ENST00000323701 ABCG1P45844 678 aa18.65■□□□□ 0.58
USP39-201ENST00000323701 MGAT5Q09328 741 aa18.65■□□□□ 0.58
USP39-201ENST00000323701 CYTH1Q15438 398 aa18.65■□□□□ 0.58
USP39-201ENST00000323701 ESRP1Q6NXG1 681 aaKnown RBP18.65■□□□□ 0.58
USP39-201ENST00000323701 PACS1Q6VY07 963 aa18.65■□□□□ 0.58
USP39-201ENST00000323701 SH3RF2Q8TEC5 729 aa18.65■□□□□ 0.58
USP39-201ENST00000323701 ALG14Q96F25 216 aa18.65■□□□□ 0.58
USP39-201ENST00000323701 DDX50Q9BQ39 737 aaKnown RBP18.65■□□□□ 0.58
USP39-201ENST00000323701 FEM1AQ9BSK4 669 aa18.65■□□□□ 0.58
USP39-201ENST00000323701 POLR1EQ9GZS1 481 aaKnown RBP18.65■□□□□ 0.58
USP39-201ENST00000323701 RETREG1Q9H6L5 497 aa18.65■□□□□ 0.58
USP39-201ENST00000323701 NOD2Q9HC29 1040 aa18.65■□□□□ 0.58
USP39-201ENST00000323701 SLC17A7Q9P2U7 560 aa18.65■□□□□ 0.58
USP39-201ENST00000323701 ATG2AQ2TAZ0 1938 aa18.65■□□□□ 0.58
USP39-201ENST00000323701 LUC7L3O95232 432 aaKnown RBP18.65■□□□□ 0.58
USP39-201ENST00000323701 PRAMEF12O95522 483 aa18.65■□□□□ 0.58
USP39-201ENST00000323701 ASMTLO95671 621 aa18.65■□□□□ 0.58
USP39-201ENST00000323701 TOP3BO95985 862 aaKnown RBP18.65■□□□□ 0.58
USP39-201ENST00000323701 PRKCGP05129 697 aa18.65■□□□□ 0.58
USP39-201ENST00000323701 RB1P06400 928 aa18.65■□□□□ 0.58
USP39-201ENST00000323701 SNRPAP09012 282 aaKnown RBP18.65■□□□□ 0.58
USP39-201ENST00000323701 ATXN1LP0C7T5 689 aaKnown RBP18.65■□□□□ 0.58
USP39-201ENST00000323701 PTPN2P17706 415 aa18.65■□□□□ 0.58
USP39-201ENST00000323701 ARNTP27540 789 aa18.65■□□□□ 0.58
USP39-201ENST00000323701 GPM6BQ13491 265 aa18.65■□□□□ 0.58
USP39-201ENST00000323701 PKN3Q6P5Z2 889 aa18.65■□□□□ 0.58
USP39-201ENST00000323701 CDHR3Q6ZTQ4 885 aa18.65■□□□□ 0.58
USP39-201ENST00000323701 GRASPQ7Z6J2 395 aaPredicted RBP18.65■□□□□ 0.58
USP39-201ENST00000323701 CMTM8Q8IZV2 173 aa18.65■□□□□ 0.58
USP39-201ENST00000323701 TDRD5Q8NAT2 981 aaKnown RBP18.65■□□□□ 0.58
USP39-201ENST00000323701 HJURPQ8NCD3 748 aaPredicted RBP18.65■□□□□ 0.58
USP39-201ENST00000323701 ZNF707Q96C28 371 aaPredicted RBP18.65■□□□□ 0.58
USP39-201ENST00000323701 ZNF599Q96NL3 588 aa18.65■□□□□ 0.58
USP39-201ENST00000323701 GCNAQ96QF7 691 aa18.65■□□□□ 0.58
USP39-201ENST00000323701 TGS1Q96RS0 853 aaKnown RBP18.65■□□□□ 0.58
USP39-201ENST00000323701 ARNT2Q9HBZ2 717 aa18.65■□□□□ 0.58
USP39-201ENST00000323701 UBA2Q9UBT2 640 aaPredicted RBP18.65■□□□□ 0.58
USP39-201ENST00000323701 SH3BP1Q9Y3L3 701 aa18.65■□□□□ 0.58
USP39-201ENST00000323701 MYO9BQ13459 2157 aa18.64■□□□□ 0.57
USP39-201ENST00000323701 MT-CO1P00395 513 aa18.64■□□□□ 0.57
USP39-201ENST00000323701 FOXN2P32314 431 aa18.64■□□□□ 0.57
USP39-201ENST00000323701 GMPRP36959 345 aa18.64■□□□□ 0.57
USP39-201ENST00000323701 CSKP41240 450 aa18.64■□□□□ 0.57
USP39-201ENST00000323701 PCID2Q5JVF3 399 aa18.64■□□□□ 0.57
USP39-201ENST00000323701 SIRPB2Q5JXA9 342 aa18.64■□□□□ 0.57
USP39-201ENST00000323701 TEDDM1Q5T9Z0 273 aa18.64■□□□□ 0.57
USP39-201ENST00000323701 TAX1BP1Q86VP1 789 aa18.64■□□□□ 0.57
USP39-201ENST00000323701 APCDD1Q8J025 514 aa18.64■□□□□ 0.57
USP39-201ENST00000323701 C12orf76Q8N812 135 aaPredicted RBP18.64■□□□□ 0.57
USP39-201ENST00000323701 DDI1Q8WTU0 396 aa18.64■□□□□ 0.57
USP39-201ENST00000323701 USP13Q92995 863 aaPredicted RBP18.64■□□□□ 0.57
USP39-201ENST00000323701 PSKH2Q96QS6 385 aa18.64■□□□□ 0.57
USP39-201ENST00000323701 MGME1Q9BQP7 344 aa18.64■□□□□ 0.57
USP39-201ENST00000323701 VPS45Q9NRW7 570 aa18.64■□□□□ 0.57
USP39-201ENST00000323701 ZFATQ9P243 1243 aa18.64■□□□□ 0.57
USP39-201ENST00000323701 MAGEB16A2A368 324 aa18.64■□□□□ 0.57
USP39-201ENST00000323701 CBX2Q14781 532 aaPredicted RBP18.64■□□□□ 0.57
USP39-201ENST00000323701 ALG1LQ6GMV1 187 aa18.64■□□□□ 0.57
USP39-201ENST00000323701 PNPLA1Q8N8W4 532 aa18.64■□□□□ 0.57
USP39-201ENST00000323701 TCP10LQ8TDR4 215 aa18.64■□□□□ 0.57
USP39-201ENST00000323701 PAIP2Q9BPZ3 127 aaKnown RBP18.64■□□□□ 0.57
USP39-201ENST00000323701 CCDC134Q9H6E4 229 aa18.64■□□□□ 0.57
USP39-201ENST00000323701 C20orf96Q9NUD7 363 aaPredicted RBP18.64■□□□□ 0.57
USP39-201ENST00000323701 NKIRAS1Q9NYS0 192 aa18.64■□□□□ 0.57
USP39-201ENST00000323701 LSM7Q9UK45 103 aaKnown RBP18.64■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms