RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 CYP24A1Q07973 514 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 GPR68Q15743 365 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 C8orf74Q6P047 294 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 MEX3BQ6ZN04 569 aaKnown RBP3.62□□□□□ -1.83
SCN1A-221ENST00000641996 ALLCQ8N6M5 410 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 KDF1Q8NAX2 398 aaPredicted RBP3.62□□□□□ -1.83
SCN1A-221ENST00000641996 TMIGD2Q96BF3 282 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 FEM1CQ96JP0 617 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 HEXIM2Q96MH2 286 aaKnown RBP3.62□□□□□ -1.83
SCN1A-221ENST00000641996 DACH2Q96NX9 599 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 NTPCRQ9BSD7 190 aaKnown RBP3.62□□□□□ -1.83
SCN1A-221ENST00000641996 CABP5Q9NP86 173 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 ABI2Q9NYB9 513 aaPredicted RBP3.62□□□□□ -1.83
SCN1A-221ENST00000641996 NUP50Q9UKX7 468 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 ATAD2BQ9ULI0 1458 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 PITPNM2Q9BZ72 1349 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 BTBD18B2RXH4 712 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 FCHO1O14526 889 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 ATF2P15336 505 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 NRG1Q02297 640 aaPredicted RBP3.62□□□□□ -1.83
SCN1A-221ENST00000641996 GUCA2AQ02747 115 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 TWF1Q12792 350 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 RUNX2Q13950 521 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 NR6A1Q15406 480 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 WLSQ5T9L3 541 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 ZSCAN25Q6NSZ9 544 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 NEK8Q86SG6 692 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 SLCO6A1Q86UG4 719 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 CHTF18Q8WVB6 975 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 AGPAT5Q9NUQ2 364 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 LIMA1Q9UHB6 759 aaKnown RBP3.62□□□□□ -1.83
SCN1A-221ENST00000641996 SERTAD1Q9UHV2 236 aa3.62□□□□□ -1.83
SCN1A-221ENST00000641996 FAM221AA4D161 298 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 A6NJY4 79 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 EFCAB8A8MWE9 144 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 I3L521 148 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 IRAK2O43187 625 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 MED7O43513 233 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 SLC2A1P11166 492 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 RRM2P31350 389 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 ZNF75DP51815 510 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 RESTQ13127 1097 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 FAM102BQ5T8I3 360 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 MSANTD1Q6ZTZ1 278 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 ADAT2Q7Z6V5 191 aaKnown RBP3.61□□□□□ -1.83
SCN1A-221ENST00000641996 FIG4Q92562 907 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 MCMBPQ9BTE3 642 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 STK33Q9BYT3 514 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 GPR63Q9BZJ6 419 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 QTRT2Q9H974 415 aaKnown RBP3.61□□□□□ -1.83
SCN1A-221ENST00000641996 STRN4Q9NRL3 753 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 MAP10Q9P2G4 905 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 LOC105371267A0A1B0GV96 52 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 DHFRP00374 187 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 STAG3L2P0CL84 134 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 TNFSF4P23510 183 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 EEF1B2P24534 225 aaKnown RBP3.61□□□□□ -1.83
SCN1A-221ENST00000641996 GNAI1P63096 354 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 ARMCX5Q6P1M9 558 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 XKR5Q6UX68 686 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 NSMFQ6X4W1 530 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 BRINP3Q76B58 766 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 ZSWIM9Q86XI8 627 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 OFCC1Q8IZS5 231 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 POMGNT2Q8NAT1 580 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 TRMT10AQ8TBZ6 339 aaKnown RBP3.61□□□□□ -1.83
SCN1A-221ENST00000641996 SLC5A11Q8WWX8 675 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 TRMT2BQ96GJ1 504 aaKnown RBP3.61□□□□□ -1.83
SCN1A-221ENST00000641996 ACSBG1Q96GR2 724 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 TMEM68Q96MH6 324 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 IFIH1Q9BYX4 1025 aaKnown RBP3.61□□□□□ -1.83
SCN1A-221ENST00000641996 SP110Q9HB58 689 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 POT1Q9NUX5 634 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 TBCCD1Q9NVR7 557 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 PGPEP1LA6NFU8 196 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 PIK3R2O00459 728 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 AP2A2O94973 939 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 LYNP07948 512 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 OSMP13725 252 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 RBL1P28749 1068 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 GTF2H1P32780 548 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 SCNN1GP51170 649 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 EPS8Q12929 822 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 CCINQ13939 588 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 SPIDRQ14159 915 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 FBXO43Q4G163 708 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 C3orf38Q5JPI3 329 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 FAXCQ5TGI0 409 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 SLC25A24Q6NUK1 477 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 IFNEQ86WN2 208 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 WDSUB1Q8N9V3 476 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 KLHL29Q96CT2 875 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 PDLIM2Q96JY6 352 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 UCN2Q96RP3 112 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 DENND2DQ9H6A0 471 aaPredicted RBP3.61□□□□□ -1.83
SCN1A-221ENST00000641996 PLA2G4CQ9UP65 541 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 EIF4G1Q04637 1599 aaKnown RBP3.61□□□□□ -1.83
SCN1A-221ENST00000641996 ZNF263O14978 683 aa3.61□□□□□ -1.83
SCN1A-221ENST00000641996 BCAS2O75934 225 aaPredicted RBP3.61□□□□□ -1.83
SCN1A-221ENST00000641996 ZWINTO95229 277 aa3.61□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms