RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 H2AFJQ9BTM1 129 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 HGH1Q9BTY7 390 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 ARMC7Q9H6L4 198 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 CATSPERBQ9H7T0 1116 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 ANKRA2Q9H9E1 313 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 SLC39A1Q9NY26 324 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 NR5A2O00482 541 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 ABCB7O75027 752 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 DGKIO75912 1065 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 GNAZP19086 355 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 TPSB2P20231 275 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 TPSAB1Q15661 275 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 PKN1Q16512 942 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 DDB1Q16531 1140 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 ZNF540Q8NDQ6 660 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 OR6P1Q8NGX9 317 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 CHPT1Q8WUD6 406 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 TCEAL4Q96EI5 215 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 SPATA5L1Q9BVQ7 753 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 UBQLN2Q9UHD9 624 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 NDUFB9Q9Y6M9 179 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 DISP2A7MBM2 1401 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 FAM237BA0A1B0GVD1 139 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 DDX39AO00148 427 aaKnown RBP4.72□□□□□ -1.65
SCN1A-220ENST00000641603 CRTAPO75718 401 aaPredicted RBP4.72□□□□□ -1.65
SCN1A-220ENST00000641603 VNN2O95498 520 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 TRAPPC2P0DI81 140 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 TRAPPC2BP0DI82 140 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 CASP1P29466 404 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 TROAPQ12815 778 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 SELPLGQ14242 412 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 STYK1Q6J9G0 422 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 ANGPTL8Q6UXH0 198 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 ITIH5Q86UX2 942 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 THRSPQ92748 146 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 AP2M1Q96CW1 435 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 SLC45A3Q96JT2 553 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 PPP3R2Q96LZ3 170 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 NMUR2Q9GZQ4 415 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 SEMA6BQ9H3T3 888 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 ST3GAL5Q9UNP4 418 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 KBTBD13C9JR72 458 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 CLCN5P51795 746 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 PEX3P56589 373 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 CNTN1Q12860 1018 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 GNASQ5JWF2 1037 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 PAMR1Q6UXH9 720 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 PLEKHG7Q6ZR37 379 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 SLC30A8Q8IWU4 369 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 RNF139Q8WU17 664 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 POF1BQ8WVV4 589 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 TTYH3Q9C0H2 523 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 MORF4L1Q9UBU8 362 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 SLC7A8Q9UHI5 535 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 KCNH4Q9UQ05 1017 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 TSPAN4O14817 238 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 LIASO43766 372 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 SHBGP04278 402 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 GSTT2BP0CG30 244 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 PEX2P28328 305 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 RGS7P49802 495 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 GRB10Q13322 594 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 HNRNPDQ14103 355 aaKnown RBP4.72□□□□□ -1.65
SCN1A-220ENST00000641603 PITRM1Q5JRX3 1037 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 RYBPQ8N488 228 aaPredicted RBP4.72□□□□□ -1.65
SCN1A-220ENST00000641603 MOSPD2Q8NHP6 518 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 HYLS1Q96M11 299 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 DGCR6LQ9BY27 220 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 STAU2Q9NUL3 570 aaKnown RBP eCLIP4.72□□□□□ -1.65
SCN1A-220ENST00000641603 CD274Q9NZQ7 290 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 ZNF624Q9P2J8 865 aaPredicted RBP4.72□□□□□ -1.65
SCN1A-220ENST00000641603 ZNF232Q9UNY5 417 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 POMPQ9Y244 141 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 ASB4Q9Y574 426 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 PCDHGB6Q9Y5F9 930 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 A0A0X1KG70 313 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 FAM95CA0A1B0GW59 222 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 SH3D21A4FU49 640 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 KCNH1O95259 989 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 PGRP06401 933 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 PPP2R1BP30154 601 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 ADORA1P30542 326 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 CHKAP35790 457 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 PNPLA4P41247 253 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 KLF10Q13118 480 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 SYT16Q17RD7 645 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 C6orf183Q5T699 404 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 ILDR1Q86SU0 546 aaPredicted RBP4.72□□□□□ -1.65
SCN1A-220ENST00000641603 ELMOD1Q8N336 334 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 REPS1Q96D71 796 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 TMEM121Q9BTD3 319 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 FN3KQ9H479 309 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 ELOVL6Q9H5J4 265 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 TRAF6Q9Y4K3 522 aa4.72□□□□□ -1.65
SCN1A-220ENST00000641603 PLD2O14939 933 aa4.71□□□□□ -1.65
SCN1A-220ENST00000641603 IGKV5-2P06315 115 aa4.71□□□□□ -1.65
SCN1A-220ENST00000641603 PKLRP30613 574 aa4.71□□□□□ -1.65
SCN1A-220ENST00000641603 ALDH1B1P30837 517 aa4.71□□□□□ -1.65
SCN1A-220ENST00000641603 MXD4Q14582 209 aaPredicted RBP4.71□□□□□ -1.65
SCN1A-220ENST00000641603 EMC2Q15006 297 aa4.71□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms