RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 CALCRLQ16602 461 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 UGP2Q16851 508 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 KIAA0753Q2KHM9 967 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 MPEG1Q2M385 716 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 GFOD2Q3B7J2 385 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 TRIM60Q495X7 471 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 SETMARQ53H47 684 aaPredicted RBP0.54□□□□□ -2.32
VPS35-212ENST00000640313 ARHGAP15Q53QZ3 475 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 TMEM196Q5HYL7 178 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 RRAGBQ5VZM2 374 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 RAP1GAP2Q684P5 730 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 MRNIPQ6NTE8 343 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 ZNF774Q6NX45 483 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 MSANTD2Q6P1R3 559 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 TLDC1Q6P9B6 456 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 CRTC1Q6UUV9 634 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 FAM198BQ6UWH4 519 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 LCTLQ6UWM7 567 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 CCDC149Q6ZUS6 474 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 MDGA2Q7Z553 956 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 NFE4Q86UQ8 179 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 CDC20BQ86Y33 519 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 C11orf53Q8IXP5 236 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 YAF2Q8IY57 180 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 ANKRD13AQ8IZ07 590 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 OR4N4Q8N0Y3 316 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 OR2C3Q8N628 320 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 ZNF441Q8N8Z8 693 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 CNBD1Q8NA66 436 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 MIGA1Q8NAN2 632 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 GLIS1Q8NBF1 620 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 SRFBP1Q8NEF9 429 aaKnown RBP0.54□□□□□ -2.32
VPS35-212ENST00000640313 DMBX1Q8NFW5 382 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 OR13A1Q8NGR1 328 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 NPIPB3Q92617 1050 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 IQCDQ96DY2 449 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 MCRS1Q96EZ8 462 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 TXNDC15Q96J42 360 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 POM121L2Q96KW2 1035 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 SNX27Q96L92 541 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 C8orf48Q96LL4 319 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 FOXN4Q96NZ1 517 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 STRBPQ96SI9 672 aaKnown RBP0.54□□□□□ -2.32
VPS35-212ENST00000640313 OPRPNQ99935 248 aaPredicted RBP0.54□□□□□ -2.32
VPS35-212ENST00000640313 STK33Q9BYT3 514 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 FRMD8Q9BZ67 464 aaPredicted RBP0.54□□□□□ -2.32
VPS35-212ENST00000640313 LRRC27Q9C0I9 530 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 SLC25A32Q9H2D1 315 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 SFXN1Q9H9B4 322 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 PELI2Q9HAT8 420 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 PRDM16Q9HAZ2 1276 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 ZNF287Q9HBT7 754 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 ZBTB26Q9HCK0 441 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 ZNF304Q9HCX3 659 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 HEYLQ9NQ87 328 aaPredicted RBP0.54□□□□□ -2.32
VPS35-212ENST00000640313 PRDM11Q9NQV5 511 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 SMARCAL1Q9NZC9 954 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 RGL1Q9NZL6 768 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 HDAC9Q9UKV0 1011 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 OGDHLQ9ULD0 1010 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 TPCN1Q9ULQ1 816 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 PHTF1Q9UMS5 762 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 LZTS1Q9Y250 596 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 DTNAQ9Y4J8 743 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 CSAG2Q9Y5P2 127 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 CGNL1Q0VF96 1302 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 PCNX3Q9H6A9 2034 aa0.54□□□□□ -2.32
VPS35-212ENST00000640313 CYP3A7-CYP3A51PA0A087WV96 503 aa0.53□□□□□ -2.32
VPS35-212ENST00000640313 ANO9A1A5B4 782 aa0.53□□□□□ -2.32
VPS35-212ENST00000640313 DYTNA2CJ06 578 aa0.53□□□□□ -2.32
VPS35-212ENST00000640313 AQP12BA6NM10 295 aa0.53□□□□□ -2.32
VPS35-212ENST00000640313 RHPN2P1A8MT19 583 aa0.53□□□□□ -2.32
VPS35-212ENST00000640313 E9PQ18 207 aa0.53□□□□□ -2.32
VPS35-212ENST00000640313 H7C423 109 aa0.53□□□□□ -2.32
VPS35-212ENST00000640313 J3KTA2 159 aa0.53□□□□□ -2.32
VPS35-212ENST00000640313 M0QYT0 321 aa0.53□□□□□ -2.32
VPS35-212ENST00000640313 APOL1O14791 398 aa0.53□□□□□ -2.32
VPS35-212ENST00000640313 NKX2-8O15522 239 aa0.53□□□□□ -2.32
VPS35-212ENST00000640313 ARHGEF9O43307 516 aa0.53□□□□□ -2.32
VPS35-212ENST00000640313 THAP12O43422 761 aa0.53□□□□□ -2.32
VPS35-212ENST00000640313 DCXO43602 365 aa0.53□□□□□ -2.32
VPS35-212ENST00000640313 MGEA5O60502 916 aa0.53□□□□□ -2.32
VPS35-212ENST00000640313 PLA2G6O60733 806 aa0.53□□□□□ -2.32
VPS35-212ENST00000640313 TAF5LO75529 589 aa0.53□□□□□ -2.32
VPS35-212ENST00000640313 RPP40O75818 363 aaKnown RBP0.53□□□□□ -2.32
VPS35-212ENST00000640313 NTSR2O95665 410 aa0.53□□□□□ -2.32
VPS35-212ENST00000640313 IGLV1-44P01699 117 aa0.53□□□□□ -2.32
VPS35-212ENST00000640313 ITGA5P08648 1049 aa0.53□□□□□ -2.32
VPS35-212ENST00000640313 CYP21A2P08686 494 aa0.53□□□□□ -2.32
VPS35-212ENST00000640313 PATE4P0C8F1 98 aa0.53□□□□□ -2.32
VPS35-212ENST00000640313 UNGP13051 313 aaPredicted RBP0.53□□□□□ -2.32
VPS35-212ENST00000640313 ALADP13716 330 aa0.53□□□□□ -2.32
VPS35-212ENST00000640313 VEGFAP15692 232 aaPredicted RBP0.53□□□□□ -2.32
VPS35-212ENST00000640313 PAX1P15863 534 aa0.53□□□□□ -2.32
VPS35-212ENST00000640313 DPEP1P16444 411 aa0.53□□□□□ -2.32
VPS35-212ENST00000640313 NPPBP16860 134 aa0.53□□□□□ -2.32
VPS35-212ENST00000640313 ZKSCAN1P17029 563 aaPredicted RBP0.53□□□□□ -2.32
VPS35-212ENST00000640313 DRD1P21728 446 aa0.53□□□□□ -2.32
VPS35-212ENST00000640313 TNFSF4P23510 183 aa0.53□□□□□ -2.32
VPS35-212ENST00000640313 CYP3A7P24462 503 aa0.53□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms