RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 TANGO2Q6ICL3 276 aa4.41□□□□□ -1.7
CD44-239ENST00000639002 SYNE3Q6ZMZ3 975 aa4.41□□□□□ -1.7
CD44-239ENST00000639002 TMEM18Q96B42 140 aa4.41□□□□□ -1.7
CD44-239ENST00000639002 TEFMQ96QE5 360 aaKnown RBP4.41□□□□□ -1.7
CD44-239ENST00000639002 RMDN3Q96TC7 470 aa4.41□□□□□ -1.7
CD44-239ENST00000639002 PKP4Q99569 1192 aa4.41□□□□□ -1.7
CD44-239ENST00000639002 CRB3Q9BUF7 120 aa4.41□□□□□ -1.7
CD44-239ENST00000639002 IFT27Q9BW83 186 aa4.41□□□□□ -1.7
CD44-239ENST00000639002 LHPPQ9H008 270 aa4.41□□□□□ -1.7
CD44-239ENST00000639002 GAREM1Q9H706 876 aa4.41□□□□□ -1.7
CD44-239ENST00000639002 DACT1Q9NYF0 836 aa4.41□□□□□ -1.7
CD44-239ENST00000639002 NLKQ9UBE8 527 aa4.41□□□□□ -1.7
CD44-239ENST00000639002 BAG5Q9UL15 447 aa4.41□□□□□ -1.7
CD44-239ENST00000639002 AGO1Q9UL18 857 aaKnown RBP4.41□□□□□ -1.7
CD44-239ENST00000639002 SRPRBQ9Y5M8 271 aaKnown RBP4.41□□□□□ -1.7
CD44-239ENST00000639002 LINC01553A4QN01 128 aa4.4□□□□□ -1.71
CD44-239ENST00000639002 H0Y3Z8 333 aa4.4□□□□□ -1.71
CD44-239ENST00000639002 SLC16A5O15375 505 aa4.4□□□□□ -1.71
CD44-239ENST00000639002 GRID2O43424 1007 aa4.4□□□□□ -1.71
CD44-239ENST00000639002 KCNJ13O60928 360 aa4.4□□□□□ -1.71
CD44-239ENST00000639002 LDB3O75112 727 aa4.4□□□□□ -1.71
CD44-239ENST00000639002 GAS8-AS1O95177 125 aa4.4□□□□□ -1.71
CD44-239ENST00000639002 CSF1P09603 554 aa4.4□□□□□ -1.71
CD44-239ENST00000639002 RFC1P35251 1148 aaPredicted RBP4.4□□□□□ -1.71
CD44-239ENST00000639002 MVDP53602 400 aa4.4□□□□□ -1.71
CD44-239ENST00000639002 DLX5P56178 289 aa4.4□□□□□ -1.71
CD44-239ENST00000639002 SYT13Q7L8C5 426 aa4.4□□□□□ -1.71
CD44-239ENST00000639002 TMPRSS12Q86WS5 348 aa4.4□□□□□ -1.71
CD44-239ENST00000639002 TCP11L2Q8N4U5 519 aa4.4□□□□□ -1.71
CD44-239ENST00000639002 NPFFR1Q9GZQ6 430 aa4.4□□□□□ -1.71
CD44-239ENST00000639002 CXorf56Q9H5V9 222 aa4.4□□□□□ -1.71
CD44-239ENST00000639002 TLR8Q9NR97 1041 aaKnown RBP4.4□□□□□ -1.71
CD44-239ENST00000639002 HDAC6Q9UBN7 1215 aa4.4□□□□□ -1.71
CD44-239ENST00000639002 LRCH1Q9Y2L9 728 aa4.4□□□□□ -1.71
CD44-239ENST00000639002 ITM2AO43736 263 aa4.39□□□□□ -1.71
CD44-239ENST00000639002 IFIT2P09913 472 aaKnown RBP4.39□□□□□ -1.71
CD44-239ENST00000639002 HTR3AP46098 478 aa4.39□□□□□ -1.71
CD44-239ENST00000639002 MTNR1AP48039 350 aa4.39□□□□□ -1.71
CD44-239ENST00000639002 MXI1P50539 228 aa4.39□□□□□ -1.71
CD44-239ENST00000639002 SMAD1Q15797 465 aaKnown RBP4.39□□□□□ -1.71
CD44-239ENST00000639002 KRTAP27-1Q3LI81 207 aa4.39□□□□□ -1.71
CD44-239ENST00000639002 ZNF718Q3SXZ3 478 aa4.39□□□□□ -1.71
CD44-239ENST00000639002 OR4N2Q8NGD1 307 aa4.39□□□□□ -1.71
CD44-239ENST00000639002 LILRB1Q8NHL6 650 aaPredicted RBP4.39□□□□□ -1.71
CD44-239ENST00000639002 CSGALNACT1Q8TDX6 532 aa4.39□□□□□ -1.71
CD44-239ENST00000639002 CLK4Q9HAZ1 481 aaKnown RBP4.39□□□□□ -1.71
CD44-239ENST00000639002 GRHL1Q9NZI5 618 aa4.39□□□□□ -1.71
CD44-239ENST00000639002 SLC45A1Q9Y2W3 748 aa4.39□□□□□ -1.71
CD44-239ENST00000639002 PLSCR5A0PG75 271 aa4.38□□□□□ -1.71
CD44-239ENST00000639002 DENND3A2RUS2 1198 aa4.38□□□□□ -1.71
CD44-239ENST00000639002 E7EVH7 732 aa4.38□□□□□ -1.71
CD44-239ENST00000639002 EYA2O00167 538 aa4.38□□□□□ -1.71
CD44-239ENST00000639002 SNRNP70P08621 437 aaKnown RBP4.38□□□□□ -1.71
CD44-239ENST00000639002 DCTDP32321 178 aa4.38□□□□□ -1.71
CD44-239ENST00000639002 PTPN9P43378 593 aa4.38□□□□□ -1.71
CD44-239ENST00000639002 PRKAA2P54646 552 aa4.38□□□□□ -1.71
CD44-239ENST00000639002 ADORA2A-AS1P86434 159 aa4.38□□□□□ -1.71
CD44-239ENST00000639002 POU5F1BQ06416 359 aa4.38□□□□□ -1.71
CD44-239ENST00000639002 ZNF672Q499Z4 452 aaPredicted RBP4.38□□□□□ -1.71
CD44-239ENST00000639002 SYCP2LQ5T4T6 812 aa4.38□□□□□ -1.71
CD44-239ENST00000639002 PALB2Q86YC2 1186 aa4.38□□□□□ -1.71
CD44-239ENST00000639002 CACNA2D3Q8IZS8 1091 aa4.38□□□□□ -1.71
CD44-239ENST00000639002 MUC20Q8N307 709 aaPredicted RBP4.38□□□□□ -1.71
CD44-239ENST00000639002 ZNF114Q8NC26 417 aa4.38□□□□□ -1.71
CD44-239ENST00000639002 SETD9Q8NE22 299 aa4.38□□□□□ -1.71
CD44-239ENST00000639002 KTI12Q96EK9 354 aaPredicted RBP4.38□□□□□ -1.71
CD44-239ENST00000639002 SLC39A13Q96H72 371 aa4.38□□□□□ -1.71
CD44-239ENST00000639002 DUX5Q96PT3 197 aa4.38□□□□□ -1.71
CD44-239ENST00000639002 MVB12BQ9H7P6 319 aa4.38□□□□□ -1.71
CD44-239ENST00000639002 G6PC2Q9NQR9 355 aa4.38□□□□□ -1.71
CD44-239ENST00000639002 TMLHEQ9NVH6 421 aa4.38□□□□□ -1.71
CD44-239ENST00000639002 SRP68Q9UHB9 627 aaKnown RBP4.38□□□□□ -1.71
CD44-239ENST00000639002 LOC102724159A0A0B4J2E5 919 aa4.37□□□□□ -1.71
CD44-239ENST00000639002 FAM157AC9JC47 383 aa4.37□□□□□ -1.71
CD44-239ENST00000639002 CCNT1O60563 726 aaKnown RBP4.37□□□□□ -1.71
CD44-239ENST00000639002 CSTBP04080 98 aaKnown RBP4.37□□□□□ -1.71
CD44-239ENST00000639002 MMP3P08254 477 aa4.37□□□□□ -1.71
CD44-239ENST00000639002 CKMT1AP12532 417 aa4.37□□□□□ -1.71
CD44-239ENST00000639002 PNPLA4P41247 253 aa4.37□□□□□ -1.71
CD44-239ENST00000639002 ICA1Q05084 483 aa4.37□□□□□ -1.71
CD44-239ENST00000639002 FOXO1Q12778 655 aa4.37□□□□□ -1.71
CD44-239ENST00000639002 THOC5Q13769 683 aaKnown RBP4.37□□□□□ -1.71
CD44-239ENST00000639002 BYSLQ13895 437 aaKnown RBP4.37□□□□□ -1.71
CD44-239ENST00000639002 PWP2Q15269 919 aaKnown RBP4.37□□□□□ -1.71
CD44-239ENST00000639002 RPE65Q16518 533 aa4.37□□□□□ -1.71
CD44-239ENST00000639002 HLFQ16534 295 aa4.37□□□□□ -1.71
CD44-239ENST00000639002 AP5B1Q2VPB7 878 aa4.37□□□□□ -1.71
CD44-239ENST00000639002 WBP2NLQ6ICG8 309 aa4.37□□□□□ -1.71
CD44-239ENST00000639002 GSG1LQ6UXU4 331 aa4.37□□□□□ -1.71
CD44-239ENST00000639002 RINLQ6ZS11 566 aa4.37□□□□□ -1.71
CD44-239ENST00000639002 FSIP1Q8NA03 581 aa4.37□□□□□ -1.71
CD44-239ENST00000639002 ATOH1Q92858 354 aaPredicted RBP4.37□□□□□ -1.71
CD44-239ENST00000639002 ZNF700Q9H0M5 742 aa4.37□□□□□ -1.71
CD44-239ENST00000639002 RETREG1Q9H6L5 497 aa4.37□□□□□ -1.71
CD44-239ENST00000639002 WDR6Q9NNW5 1121 aaKnown RBP4.37□□□□□ -1.71
CD44-239ENST00000639002 GRHPRQ9UBQ7 328 aa4.37□□□□□ -1.71
CD44-239ENST00000639002 A0A1B0GVM2 712 aa4.36□□□□□ -1.71
CD44-239ENST00000639002 DYTNA2CJ06 578 aa4.36□□□□□ -1.71
CD44-239ENST00000639002 OR6C68A6NDL8 312 aa4.36□□□□□ -1.71
CD44-239ENST00000639002 KDM4EB2RXH2 506 aaPredicted RBP4.36□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms