RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 CCDC153Q494R4 210 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 GRTP1Q5TC63 336 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 FAM131BQ86XD5 332 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 SYT12Q8IV01 421 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 FATE1Q969F0 183 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 FEM1CQ96JP0 617 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 PRMT1Q99873 361 aaKnown RBP6.2□□□□□ -1.42
SCN1A-217ENST00000637988 CELF4Q9BZC1 486 aaKnown RBP6.2□□□□□ -1.42
SCN1A-217ENST00000637988 CLEC4MQ9H2X3 399 aaPredicted RBP6.2□□□□□ -1.42
SCN1A-217ENST00000637988 EXD2Q9NVH0 621 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 MYO3AQ8NEV4 1616 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 MYL12BO14950 172 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 HSMCR30P0CW71 290 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 RBMS1P29558 406 aaKnown RBP6.2□□□□□ -1.42
SCN1A-217ENST00000637988 SERPINH1P50454 418 aaKnown RBP6.2□□□□□ -1.42
SCN1A-217ENST00000637988 FAM98BQ52LJ0 330 aaKnown RBP6.2□□□□□ -1.42
SCN1A-217ENST00000637988 FAM129CQ86XR2 697 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 PJA1Q8NG27 643 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 ZNF671Q8TAW3 534 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 KCNJ9Q92806 393 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 SGSM3Q96HU1 749 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 VAT1Q99536 393 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 ZNF624Q9P2J8 865 aaPredicted RBP6.2□□□□□ -1.42
SCN1A-217ENST00000637988 MARCOQ9UEW3 520 aaPredicted RBP6.2□□□□□ -1.42
SCN1A-217ENST00000637988 COL1A2P08123 1366 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 O00370 1275 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 AGTP01019 485 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 TNFP01375 233 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 IFNGP01579 166 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 LTFP02788 710 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 ATP6V1B2P21281 511 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 IDSP22304 550 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 ATP5A1P25705 553 aaKnown RBP6.2□□□□□ -1.42
SCN1A-217ENST00000637988 SERPINB1P30740 379 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 OC90Q02509 493 aaPredicted RBP6.2□□□□□ -1.42
SCN1A-217ENST00000637988 MPP3Q13368 585 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 CASP8Q14790 479 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 SMCO1Q147U7 214 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 DAB2IPQ5VWQ8 1189 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 TRIQKQ629K1 86 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP6.2□□□□□ -1.42
SCN1A-217ENST00000637988 OAFQ86UD1 273 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 LRRC49Q8IUZ0 686 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 FAM81AQ8TBF8 368 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 UTP15Q8TED0 518 aaKnown RBP6.2□□□□□ -1.42
SCN1A-217ENST00000637988 SAMD11Q96NU1 681 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 GPER1Q99527 375 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 TSC22D3Q99576 134 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 DDX47Q9H0S4 455 aaKnown RBP6.2□□□□□ -1.42
SCN1A-217ENST00000637988 SPATA6Q9NWH7 488 aaPredicted RBP6.2□□□□□ -1.42
SCN1A-217ENST00000637988 DDX20Q9UHI6 824 aaKnown RBP6.2□□□□□ -1.42
SCN1A-217ENST00000637988 ASF1AQ9Y294 204 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 LYVE1Q9Y5Y7 322 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 FPGTO14772 594 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 PER1O15534 1290 aaPredicted RBP6.2□□□□□ -1.42
SCN1A-217ENST00000637988 MAGEA4P43358 317 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 PRKAG1P54619 331 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 GALCP54803 685 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 MBTD1Q05BQ5 628 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 LRRC6Q86X45 466 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 CLEC10AQ8IUN9 316 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 C5orf34Q96MH7 638 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 ZNF607Q96SK3 696 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 SIKE1Q9BRV8 207 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 DSN1Q9H410 356 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 EFCAB1Q9HAE3 211 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 B3GAT2Q9NPZ5 323 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 MTPAPQ9NVV4 582 aaKnown RBP eCLIP6.2□□□□□ -1.42
SCN1A-217ENST00000637988 ACOT9Q9Y305 439 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 H0Y858 1186 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 LAMTOR5O43504 91 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 ZNF500O60304 480 aaPredicted RBP6.19□□□□□ -1.42
SCN1A-217ENST00000637988 PDE9AO76083 593 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 FSBPO95073 299 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 ZNF23P17027 643 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 CASP9P55211 416 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 FOXK1P85037 733 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 VAC14Q08AM6 782 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 SNTA1Q13424 505 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 GRB14Q14449 540 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 MINDY4Q4G0A6 757 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 ACSM2BQ68CK6 577 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 ZNF621Q6ZSS3 439 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 COLGALT1Q8NBJ5 622 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 OR5T3Q8NGG3 340 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 PPTC7Q8NI37 304 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 SPATA20Q8TB22 786 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 APOL4Q9BPW4 351 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 HMG20AQ9NP66 347 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 PRDM8Q9NQV8 689 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 PADI2Q9Y2J8 665 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 NCOA3Q9Y6Q9 1424 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 ABHD14A-ACY1A0A1B0GW23 586 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 ACKR2O00590 384 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 TRIM24O15164 1050 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 STAT5AP42229 794 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 COPAP53621 1224 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 BMT2Q1RMZ1 405 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 CNSTQ6PJW8 725 aa6.19□□□□□ -1.42
SCN1A-217ENST00000637988 UBR7Q8N806 425 aa6.19□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms