RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 NHEJ1Q9H9Q4 299 aaPredicted RBP19.61■□□□□ 0.73
CLN3-260ENST00000637578 IL36AQ9UHA7 158 aa19.61■□□□□ 0.73
CLN3-260ENST00000637578 FNDC3AQ9Y2H6 1198 aaKnown RBP19.61■□□□□ 0.73
CLN3-260ENST00000637578 SNX11Q9Y5W9 270 aa19.61■□□□□ 0.73
CLN3-260ENST00000637578 WASF2Q9Y6W5 498 aa19.61■□□□□ 0.73
CLN3-260ENST00000637578 CREB3O43889 395 aa19.61■□□□□ 0.73
CLN3-260ENST00000637578 CTSKP43235 329 aa19.61■□□□□ 0.73
CLN3-260ENST00000637578 RECQLP46063 649 aaPredicted RBP19.61■□□□□ 0.73
CLN3-260ENST00000637578 YBEYP58557 167 aaPredicted RBP19.61■□□□□ 0.73
CLN3-260ENST00000637578 SHC2P98077 582 aa19.61■□□□□ 0.73
CLN3-260ENST00000637578 POM121L1PQ3SYA9 428 aa19.61■□□□□ 0.73
CLN3-260ENST00000637578 CARD16Q5EG05 197 aa19.61■□□□□ 0.73
CLN3-260ENST00000637578 ARSIQ5FYB1 569 aa19.61■□□□□ 0.73
CLN3-260ENST00000637578 CYP4V2Q6ZWL3 525 aaPredicted RBP19.61■□□□□ 0.73
CLN3-260ENST00000637578 UMODL1-AS1Q8N2C9 162 aa19.61■□□□□ 0.73
CLN3-260ENST00000637578 VOPP1Q96AW1 172 aa19.61■□□□□ 0.73
CLN3-260ENST00000637578 ARRDC3Q96B67 414 aa19.61■□□□□ 0.73
CLN3-260ENST00000637578 ZNF653Q96CK0 615 aa19.61■□□□□ 0.73
CLN3-260ENST00000637578 HDAC8Q9BY41 377 aa19.61■□□□□ 0.73
CLN3-260ENST00000637578 PREBQ9HCU5 417 aa19.61■□□□□ 0.73
CLN3-260ENST00000637578 HPCAL4Q9UM19 191 aa19.61■□□□□ 0.73
CLN3-260ENST00000637578 NENFQ9UMX5 172 aa19.61■□□□□ 0.73
CLN3-260ENST00000637578 FCF1Q9Y324 198 aaKnown RBP19.61■□□□□ 0.73
CLN3-260ENST00000637578 PCDHGB2Q9Y5G2 931 aa19.61■□□□□ 0.73
CLN3-260ENST00000637578 SCINQ9Y6U3 715 aa19.61■□□□□ 0.73
CLN3-260ENST00000637578 A0A1W2PR77 199 aa19.6■□□□□ 0.73
CLN3-260ENST00000637578 GOLGA6L6A8MZA4 724 aa19.6■□□□□ 0.73
CLN3-260ENST00000637578 WNT9AO14904 365 aa19.6■□□□□ 0.73
CLN3-260ENST00000637578 FGF10O15520 208 aaPredicted RBP19.6■□□□□ 0.73
CLN3-260ENST00000637578 AKR1B10O60218 316 aa19.6■□□□□ 0.73
CLN3-260ENST00000637578 LEFTY1O75610 366 aa19.6■□□□□ 0.73
CLN3-260ENST00000637578 WNT1P04628 370 aa19.6■□□□□ 0.73
CLN3-260ENST00000637578 FECHP22830 423 aa19.6■□□□□ 0.73
CLN3-260ENST00000637578 NUDT1P36639 197 aa19.6■□□□□ 0.73
CLN3-260ENST00000637578 CCDC15Q0P6D6 951 aa19.6■□□□□ 0.73
CLN3-260ENST00000637578 HNRNPDQ14103 355 aaKnown RBP19.6■□□□□ 0.73
CLN3-260ENST00000637578 SLC18A3Q16572 532 aa19.6■□□□□ 0.73
CLN3-260ENST00000637578 ERMARDQ5T6L9 678 aa19.6■□□□□ 0.73
CLN3-260ENST00000637578 ALKBH5Q6P6C2 394 aaKnown RBP19.6■□□□□ 0.73
CLN3-260ENST00000637578 CCDC42Q96M95 316 aa19.6■□□□□ 0.73
CLN3-260ENST00000637578 SLC6A18Q96N87 628 aa19.6■□□□□ 0.73
CLN3-260ENST00000637578 PEBP4Q96S96 227 aa19.6■□□□□ 0.73
CLN3-260ENST00000637578 HEPHQ9BQS7 1158 aa19.6■□□□□ 0.73
CLN3-260ENST00000637578 CATSPERBQ9H7T0 1116 aa19.6■□□□□ 0.73
CLN3-260ENST00000637578 MRPL47Q9HD33 250 aaKnown RBP19.6■□□□□ 0.73
CLN3-260ENST00000637578 TM7SF3Q9NS93 570 aa19.6■□□□□ 0.73
CLN3-260ENST00000637578 WASF3Q9UPY6 502 aa19.6■□□□□ 0.73
CLN3-260ENST00000637578 ZSCAN5CA6NGD5 496 aaPredicted RBP19.59■□□□□ 0.73
CLN3-260ENST00000637578 KPNA3O00505 521 aaPredicted RBP19.59■□□□□ 0.73
CLN3-260ENST00000637578 SH3BP5O60239 455 aa19.59■□□□□ 0.73
CLN3-260ENST00000637578 ACAP1Q15027 740 aa19.59■□□□□ 0.73
CLN3-260ENST00000637578 ZNF423Q2M1K9 1284 aa19.59■□□□□ 0.73
CLN3-260ENST00000637578 CCDC122Q5T0U0 273 aa19.59■□□□□ 0.73
CLN3-260ENST00000637578 NEK5Q6P3R8 708 aa19.59■□□□□ 0.73
CLN3-260ENST00000637578 LAYNQ6UX15 382 aa19.59■□□□□ 0.73
CLN3-260ENST00000637578 PSTKQ8IV42 348 aaKnown RBP19.59■□□□□ 0.73
CLN3-260ENST00000637578 SPTLC3Q9NUV7 552 aa19.59■□□□□ 0.73
CLN3-260ENST00000637578 GPATCH2LQ9NWQ4 482 aa19.59■□□□□ 0.73
CLN3-260ENST00000637578 AP4E1Q9UPM8 1137 aa19.59■□□□□ 0.73
CLN3-260ENST00000637578 DMTF1Q9Y222 760 aa19.59■□□□□ 0.73
CLN3-260ENST00000637578 CBFA2T3O75081 653 aa19.58■□□□□ 0.73
CLN3-260ENST00000637578 RNF8O76064 485 aa19.58■□□□□ 0.73
CLN3-260ENST00000637578 CD38P28907 300 aa19.58■□□□□ 0.73
CLN3-260ENST00000637578 MIPP30301 263 aa19.58■□□□□ 0.73
CLN3-260ENST00000637578 CCNHP51946 323 aaPredicted RBP19.58■□□□□ 0.73
CLN3-260ENST00000637578 SERINC3Q13530 473 aa19.58■□□□□ 0.73
CLN3-260ENST00000637578 CA9Q16790 459 aa19.58■□□□□ 0.73
CLN3-260ENST00000637578 PARP15Q460N3 678 aa19.58■□□□□ 0.73
CLN3-260ENST00000637578 ERN2Q76MJ5 926 aaKnown RBP19.58■□□□□ 0.73
CLN3-260ENST00000637578 PRPF39Q86UA1 669 aaKnown RBP19.58■□□□□ 0.73
CLN3-260ENST00000637578 NAXDQ8IW45 347 aa19.58■□□□□ 0.73
CLN3-260ENST00000637578 GRIN3AQ8TCU5 1115 aa19.58■□□□□ 0.73
CLN3-260ENST00000637578 SERAC1Q96JX3 654 aa19.58■□□□□ 0.73
CLN3-260ENST00000637578 NCAPGQ9BPX3 1015 aa19.58■□□□□ 0.73
CLN3-260ENST00000637578 SNRNP25Q9BV90 132 aaKnown RBP19.58■□□□□ 0.73
CLN3-260ENST00000637578 KLC2Q9H0B6 622 aa19.58■□□□□ 0.73
CLN3-260ENST00000637578 LRRC19Q9H756 370 aa19.58■□□□□ 0.73
CLN3-260ENST00000637578 RASA4BC9J798 803 aa19.57■□□□□ 0.72
CLN3-260ENST00000637578 RASA4O43374 803 aa19.57■□□□□ 0.72
CLN3-260ENST00000637578 LRCH4O75427 683 aa19.57■□□□□ 0.72
CLN3-260ENST00000637578 GSRP00390 522 aa19.57■□□□□ 0.72
CLN3-260ENST00000637578 ITGB7P26010 798 aa19.57■□□□□ 0.72
CLN3-260ENST00000637578 PCK1P35558 622 aa19.57■□□□□ 0.72
CLN3-260ENST00000637578 GSDMDP57764 484 aa19.57■□□□□ 0.72
CLN3-260ENST00000637578 TPI1P60174 286 aa19.57■□□□□ 0.72
CLN3-260ENST00000637578 FAM193AP78312 1265 aa19.57■□□□□ 0.72
CLN3-260ENST00000637578 INO80DQ53TQ3 878 aaPredicted RBP19.57■□□□□ 0.72
CLN3-260ENST00000637578 NAPEPLDQ6IQ20 393 aa19.57■□□□□ 0.72
CLN3-260ENST00000637578 CASKIN2Q8WXE0 1202 aa19.57■□□□□ 0.72
CLN3-260ENST00000637578 HMCESQ96FZ2 354 aa19.57■□□□□ 0.72
CLN3-260ENST00000637578 PPP1R16AQ96I34 528 aa19.57■□□□□ 0.72
CLN3-260ENST00000637578 LRIG1Q96JA1 1093 aa19.57■□□□□ 0.72
CLN3-260ENST00000637578 CAMK1GQ96NX5 476 aa19.57■□□□□ 0.72
CLN3-260ENST00000637578 DONSONQ9NYP3 566 aa19.57■□□□□ 0.72
CLN3-260ENST00000637578 MYO1AQ9UBC5 1043 aa19.57■□□□□ 0.72
CLN3-260ENST00000637578 HECAQ9UBI9 543 aaPredicted RBP19.57■□□□□ 0.72
CLN3-260ENST00000637578 PCSK1NQ9UHG2 260 aa19.57■□□□□ 0.72
CLN3-260ENST00000637578 PLXNA2O75051 1894 aa19.57■□□□□ 0.72
CLN3-260ENST00000637578 SOWAHDA6NJG2 315 aa19.57■□□□□ 0.72
CLN3-260ENST00000637578 PCDHGA12O60330 932 aa19.57■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms