RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 HEPHQ9BQS7 1158 aa18.6■□□□□ 0.57
CLN3-259ENST00000637551 HDAC8Q9BY41 377 aa18.6■□□□□ 0.57
CLN3-259ENST00000637551 CPEB1Q9BZB8 566 aaKnown RBP18.6■□□□□ 0.57
CLN3-259ENST00000637551 GRPEL1Q9HAV7 217 aa18.6■□□□□ 0.57
CLN3-259ENST00000637551 HAUS2Q9NVX0 235 aa18.6■□□□□ 0.57
CLN3-259ENST00000637551 FBXL12Q9NXK8 326 aa18.6■□□□□ 0.57
CLN3-259ENST00000637551 UBA2Q9UBT2 640 aaPredicted RBP18.6■□□□□ 0.57
CLN3-259ENST00000637551 IL36AQ9UHA7 158 aa18.6■□□□□ 0.57
CLN3-259ENST00000637551 AMACRQ9UHK6 382 aa18.6■□□□□ 0.57
CLN3-259ENST00000637551 GOLGA6L3A6NEY3 463 aa18.59■□□□□ 0.57
CLN3-259ENST00000637551 LRRC72A6NJI9 287 aa18.59■□□□□ 0.57
CLN3-259ENST00000637551 METTL12A8MUP2 240 aa18.59■□□□□ 0.57
CLN3-259ENST00000637551 BUB1O43683 1085 aa18.59■□□□□ 0.57
CLN3-259ENST00000637551 SPOPO43791 374 aa18.59■□□□□ 0.57
CLN3-259ENST00000637551 TMCC1O94876 653 aa18.59■□□□□ 0.57
CLN3-259ENST00000637551 POP4O95707 220 aaKnown RBP18.59■□□□□ 0.57
CLN3-259ENST00000637551 SEMA4FO95754 770 aa18.59■□□□□ 0.57
CLN3-259ENST00000637551 IL1BP01584 269 aa18.59■□□□□ 0.57
CLN3-259ENST00000637551 ZFXP17010 805 aaPredicted RBP18.59■□□□□ 0.57
CLN3-259ENST00000637551 MX2P20592 715 aa18.59■□□□□ 0.57
CLN3-259ENST00000637551 MPLP40238 635 aa18.59■□□□□ 0.57
CLN3-259ENST00000637551 SSR1P43307 286 aaKnown RBP18.59■□□□□ 0.57
CLN3-259ENST00000637551 NOP2P46087 812 aaKnown RBP18.59■□□□□ 0.57
CLN3-259ENST00000637551 RENBPP51606 427 aa18.59■□□□□ 0.57
CLN3-259ENST00000637551 SUOXP51687 545 aa18.59■□□□□ 0.57
CLN3-259ENST00000637551 LMNB2Q03252 620 aa18.59■□□□□ 0.57
CLN3-259ENST00000637551 NSUN2Q08J23 767 aaKnown RBP eCLIP18.59■□□□□ 0.57
CLN3-259ENST00000637551 LINGO4Q6UY18 593 aa18.59■□□□□ 0.57
CLN3-259ENST00000637551 NPWQ8N729 165 aa18.59■□□□□ 0.57
CLN3-259ENST00000637551 OR2T34Q8NGX1 318 aa18.59■□□□□ 0.57
CLN3-259ENST00000637551 PIP4K2CQ8TBX8 421 aa18.59■□□□□ 0.57
CLN3-259ENST00000637551 SPOCK2Q92563 424 aa18.59■□□□□ 0.57
CLN3-259ENST00000637551 OMDQ99983 421 aa18.59■□□□□ 0.57
CLN3-259ENST00000637551 CALN1Q9BXU9 219 aa18.59■□□□□ 0.57
CLN3-259ENST00000637551 TSGA10Q9BZW7 698 aa18.59■□□□□ 0.57
CLN3-259ENST00000637551 SLC39A8Q9C0K1 460 aa18.59■□□□□ 0.57
CLN3-259ENST00000637551 SLC6A17Q9H1V8 727 aa18.59■□□□□ 0.57
CLN3-259ENST00000637551 REXO2Q9Y3B8 237 aaKnown RBP18.59■□□□□ 0.57
CLN3-259ENST00000637551 PRR5-ARHGAP8B1AHC4 643 aa18.58■□□□□ 0.56
CLN3-259ENST00000637551 K7ERQ8 282 aa18.58■□□□□ 0.56
CLN3-259ENST00000637551 MID1O15344 667 aa18.58■□□□□ 0.56
CLN3-259ENST00000637551 BUB1BO60566 1050 aaPredicted RBP18.58■□□□□ 0.56
CLN3-259ENST00000637551 IGSF6O95976 241 aa18.58■□□□□ 0.56
CLN3-259ENST00000637551 VAV1P15498 845 aa18.58■□□□□ 0.56
CLN3-259ENST00000637551 TGM1P22735 817 aa18.58■□□□□ 0.56
CLN3-259ENST00000637551 KDELR1P24390 212 aa18.58■□□□□ 0.56
CLN3-259ENST00000637551 ITGB7P26010 798 aa18.58■□□□□ 0.56
CLN3-259ENST00000637551 DRD3P35462 400 aa18.58■□□□□ 0.56
CLN3-259ENST00000637551 PAPOLAP51003 745 aaKnown RBP18.58■□□□□ 0.56
CLN3-259ENST00000637551 CCR5P51681 352 aa18.58■□□□□ 0.56
CLN3-259ENST00000637551 CCNHP51946 323 aaPredicted RBP18.58■□□□□ 0.56
CLN3-259ENST00000637551 ARHGAP8P85298 464 aa18.58■□□□□ 0.56
CLN3-259ENST00000637551 KIF5AQ12840 1032 aa18.58■□□□□ 0.56
CLN3-259ENST00000637551 ANKRD20A8PQ5CZ79 823 aa18.58■□□□□ 0.56
CLN3-259ENST00000637551 DPY19L3Q6ZPD9 716 aa18.58■□□□□ 0.56
CLN3-259ENST00000637551 ZNF662Q6ZS27 426 aa18.58■□□□□ 0.56
CLN3-259ENST00000637551 ZNF354CQ86Y25 554 aa18.58■□□□□ 0.56
CLN3-259ENST00000637551 SPC24Q8NBT2 197 aa18.58■□□□□ 0.56
CLN3-259ENST00000637551 TPCN2Q8NHX9 752 aa18.58■□□□□ 0.56
CLN3-259ENST00000637551 RAB7BQ96AH8 199 aa18.58■□□□□ 0.56
CLN3-259ENST00000637551 TSGA13Q96PP4 275 aa18.58■□□□□ 0.56
CLN3-259ENST00000637551 PSKH2Q96QS6 385 aa18.58■□□□□ 0.56
CLN3-259ENST00000637551 TUBGCP5Q96RT8 1024 aa18.58■□□□□ 0.56
CLN3-259ENST00000637551 MTG2Q9H4K7 406 aa18.58■□□□□ 0.56
CLN3-259ENST00000637551 SP110Q9HB58 689 aa18.58■□□□□ 0.56
CLN3-259ENST00000637551 PREBQ9HCU5 417 aa18.58■□□□□ 0.56
CLN3-259ENST00000637551 IPO11Q9UI26 975 aaKnown RBP18.58■□□□□ 0.56
CLN3-259ENST00000637551 PILRBQ9UKJ0 227 aa18.58■□□□□ 0.56
CLN3-259ENST00000637551 ALG6Q9Y672 507 aa18.58■□□□□ 0.56
CLN3-259ENST00000637551 WASF2Q9Y6W5 498 aa18.58■□□□□ 0.56
CLN3-259ENST00000637551 PLRG1O43660 514 aaKnown RBP18.57■□□□□ 0.56
CLN3-259ENST00000637551 GNSP15586 552 aa18.57■□□□□ 0.56
CLN3-259ENST00000637551 COMTP21964 271 aa18.57■□□□□ 0.56
CLN3-259ENST00000637551 AMPD1P23109 780 aa18.57■□□□□ 0.56
CLN3-259ENST00000637551 PSMD8P48556 350 aa18.57■□□□□ 0.56
CLN3-259ENST00000637551 DHPSP49366 369 aaPredicted RBP18.57■□□□□ 0.56
CLN3-259ENST00000637551 GALNT2Q10471 571 aa18.57■□□□□ 0.56
CLN3-259ENST00000637551 TAZQ16635 292 aa18.57■□□□□ 0.56
CLN3-259ENST00000637551 TIGD7Q6NT04 549 aaPredicted RBP18.57■□□□□ 0.56
CLN3-259ENST00000637551 KIAA1328Q86T90 577 aa18.57■□□□□ 0.56
CLN3-259ENST00000637551 KATNAL2Q8IYT4 538 aa18.57■□□□□ 0.56
CLN3-259ENST00000637551 SYCE1Q8N0S2 351 aa18.57■□□□□ 0.56
CLN3-259ENST00000637551 BBS5Q8N3I7 341 aa18.57■□□□□ 0.56
CLN3-259ENST00000637551 ATPAF2Q8N5M1 289 aa18.57■□□□□ 0.56
CLN3-259ENST00000637551 RNF10Q8N5U6 811 aaKnown RBP18.57■□□□□ 0.56
CLN3-259ENST00000637551 AADATQ8N5Z0 425 aa18.57■□□□□ 0.56
CLN3-259ENST00000637551 HSPA12BQ96MM6 686 aa18.57■□□□□ 0.56
CLN3-259ENST00000637551 RNF157Q96PX1 679 aa18.57■□□□□ 0.56
CLN3-259ENST00000637551 BRD8Q9H0E9 1235 aa18.57■□□□□ 0.56
CLN3-259ENST00000637551 DYRK4Q9NR20 520 aa18.57■□□□□ 0.56
CLN3-259ENST00000637551 SEMA4GQ9NTN9 838 aa18.57■□□□□ 0.56
CLN3-259ENST00000637551 DKK3Q9UBP4 350 aa18.57■□□□□ 0.56
CLN3-259ENST00000637551 SEPT3Q9UH03 358 aa18.57■□□□□ 0.56
CLN3-259ENST00000637551 EFR3BQ9Y2G0 817 aa18.57■□□□□ 0.56
CLN3-259ENST00000637551 FCF1Q9Y324 198 aaKnown RBP18.57■□□□□ 0.56
CLN3-259ENST00000637551 ATRXP46100 2492 aa18.57■□□□□ 0.56
CLN3-259ENST00000637551 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa18.56■□□□□ 0.56
CLN3-259ENST00000637551 LRRD1A4D1F6 860 aa18.56■□□□□ 0.56
CLN3-259ENST00000637551 C3orf70A6NLC5 250 aaPredicted RBP18.56■□□□□ 0.56
CLN3-259ENST00000637551 AP1G1O43747 822 aa18.56■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms