RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 DPYSQ14117 519 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 USP10Q14694 798 aaKnown RBP4.04□□□□□ -1.76
SCN1A-214ENST00000637038 ZNF528Q3MIS6 628 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 NOTUMQ6P988 496 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 OLFML1Q6UWY5 402 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 B3GNT6Q6ZMB0 384 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 RAB44Q7Z6P3 723 aaPredicted RBP4.04□□□□□ -1.76
SCN1A-214ENST00000637038 C10orf107Q8IVU9 208 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 UNC5BQ8IZJ1 945 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 SLC25A41Q8N5S1 370 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 TRIML2Q8N7C3 387 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 CNTD1Q8N815 330 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 TERB1Q8NA31 727 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 CALML6Q8TD86 181 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 RNF139Q8WU17 664 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 RNF34Q969K3 372 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 MRPL38Q96DV4 380 aaKnown RBP4.04□□□□□ -1.76
SCN1A-214ENST00000637038 ASIC4Q96FT7 647 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 VPS39Q96JC1 886 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 RBBP8Q99708 897 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 SPOCK3Q9BQ16 436 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 IL22Q9GZX6 179 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 EPB41L1Q9H4G0 881 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 SNX15Q9NRS6 342 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 KRT82Q9NSB4 513 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 C20orf96Q9NUD7 363 aaPredicted RBP4.04□□□□□ -1.76
SCN1A-214ENST00000637038 CLDND1Q9NY35 253 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 PTTG2Q9NZH5 202 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 BTBD7Q9P203 1132 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 ATXN10Q9UBB4 475 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 KLF15Q9UIH9 416 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 FBXO4Q9UKT5 387 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 AAR2Q9Y312 384 aaKnown RBP4.04□□□□□ -1.76
SCN1A-214ENST00000637038 INSL6Q9Y581 213 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 LOC100653049A0A140TA62 436 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 ARHGEF37A1IGU5 675 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 PDLIM1O00151 329 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 CYB561D2O14569 222 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 KRT34O76011 436 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 ANXA9O76027 345 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 PDE5AO76074 875 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 USP1O94782 785 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 FGF3P11487 239 aaPredicted RBP4.04□□□□□ -1.76
SCN1A-214ENST00000637038 ALOX15P16050 662 aaPredicted RBP4.04□□□□□ -1.76
SCN1A-214ENST00000637038 AXLP30530 894 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 L1CAMP32004 1257 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 NOS2P35228 1153 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 MATKP42679 507 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 TAF6P49848 677 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 NIPAL4Q0D2K0 466 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 PDE1CQ14123 709 aaPredicted RBP4.04□□□□□ -1.76
SCN1A-214ENST00000637038 LY6KQ17RY6 165 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 LRRC36Q1X8D7 754 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 SLC25A52Q3SY17 297 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 LIPMQ5VYY2 423 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 ASTLQ6HA08 431 aaPredicted RBP4.04□□□□□ -1.76
SCN1A-214ENST00000637038 C16orf46Q6P387 395 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 CDHR3Q6ZTQ4 885 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 POU5F2Q8N7G0 328 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 NAT14Q8WUY8 206 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 NRG4Q8WWG1 115 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 UBL7Q96S82 380 aaPredicted RBP4.04□□□□□ -1.76
SCN1A-214ENST00000637038 PCYT2Q99447 389 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 RAD9AQ99638 391 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 PDZD7Q9H5P4 517 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 CYTH4Q9UIA0 394 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 DMTF1Q9Y222 760 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 POMPQ9Y244 141 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 A0A087WZ62 844 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 A0A088AWK7 358 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 C15orf38-AP3S2A0A0A6YYH1 394 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 E9PBE3 544 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 XPO1O14980 1071 aaKnown RBP4.04□□□□□ -1.76
SCN1A-214ENST00000637038 B4GALT5O43286 388 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 KLHL41O60662 606 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 LYPLA1O75608 230 aaPredicted RBP4.04□□□□□ -1.76
SCN1A-214ENST00000637038 METTL18O95568 372 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 GSRP00390 522 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 PABPC4LP0CB38 370 aaKnown RBP4.04□□□□□ -1.76
SCN1A-214ENST00000637038 IMPDH2P12268 514 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 VAV1P15498 845 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 PSMC3P17980 439 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 PIK3R1P27986 724 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 NR1H2P55055 460 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 GBE1Q04446 702 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 FOLH1Q04609 750 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 CDH17Q12864 832 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 MSLNQ13421 630 aaPredicted RBP4.04□□□□□ -1.76
SCN1A-214ENST00000637038 CNPY1Q3B7I2 92 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 C4orf46Q504U0 113 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 PRMT9Q6P2P2 845 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 SLC27A1Q6PCB7 646 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 TRMT10BQ6PF06 316 aaKnown RBP4.04□□□□□ -1.76
SCN1A-214ENST00000637038 PIWIL4Q7Z3Z4 852 aaKnown RBP4.04□□□□□ -1.76
SCN1A-214ENST00000637038 ARPINQ7Z6K5 226 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 KCNMB4Q86W47 210 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 SNX32Q86XE0 403 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 SCUBE3Q8IX30 993 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 KIAA0319LQ8IZA0 1049 aa4.04□□□□□ -1.76
SCN1A-214ENST00000637038 PGAM4Q8N0Y7 254 aa4.04□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms