RNA–Protein interactions for RNA: ENST00000622702.1

PDLIM2-221, Transcript of PDZ and LIM domain 2, humanhuman

TSL 5 BASIC

Gene PDLIM2, Length 1,490 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-221ENST00000622702 PSKH2Q96QS6 385 aa20.18■□□□□ 0.82
PDLIM2-221ENST00000622702 VAT1Q99536 393 aa20.18■□□□□ 0.82
PDLIM2-221ENST00000622702 CEP44Q9C0F1 390 aa20.18■□□□□ 0.82
PDLIM2-221ENST00000622702 DDX47Q9H0S4 455 aaKnown RBP20.18■□□□□ 0.82
PDLIM2-221ENST00000622702 C2orf42Q9NWW7 574 aa20.18■□□□□ 0.82
PDLIM2-221ENST00000622702 SEPT3Q9UH03 358 aa20.18■□□□□ 0.82
PDLIM2-221ENST00000622702 AMACRQ9UHK6 382 aa20.18■□□□□ 0.82
PDLIM2-221ENST00000622702 SLCO3A1Q9UIG8 710 aa20.18■□□□□ 0.82
PDLIM2-221ENST00000622702 CHURC1-FNTBB4DL54 471 aa20.17■□□□□ 0.82
PDLIM2-221ENST00000622702 KCNN4O15554 427 aa20.17■□□□□ 0.82
PDLIM2-221ENST00000622702 PTPN3P26045 913 aa20.17■□□□□ 0.82
PDLIM2-221ENST00000622702 KCNJ1P48048 391 aa20.17■□□□□ 0.82
PDLIM2-221ENST00000622702 CXCL12P48061 93 aa20.17■□□□□ 0.82
PDLIM2-221ENST00000622702 ST8SIA6P61647 398 aa20.17■□□□□ 0.82
PDLIM2-221ENST00000622702 SATB1Q01826 763 aa20.17■□□□□ 0.82
PDLIM2-221ENST00000622702 LMNB2Q03252 620 aa20.17■□□□□ 0.82
PDLIM2-221ENST00000622702 ZBTB17Q13105 803 aa20.17■□□□□ 0.82
PDLIM2-221ENST00000622702 ENPP2Q13822 863 aa20.17■□□□□ 0.82
PDLIM2-221ENST00000622702 ZNF234Q14588 700 aa20.17■□□□□ 0.82
PDLIM2-221ENST00000622702 CYTH1Q15438 398 aa20.17■□□□□ 0.82
PDLIM2-221ENST00000622702 EGFLAMQ63HQ2 1017 aa20.17■□□□□ 0.82
PDLIM2-221ENST00000622702 CCDC137Q6PK04 289 aaKnown RBP20.17■□□□□ 0.82
PDLIM2-221ENST00000622702 CEP112Q8N8E3 955 aa20.17■□□□□ 0.82
PDLIM2-221ENST00000622702 ISG20Q96AZ6 181 aaKnown RBP20.17■□□□□ 0.82
PDLIM2-221ENST00000622702 ZNF419Q96HQ0 510 aaPredicted RBP20.17■□□□□ 0.82
PDLIM2-221ENST00000622702 RUNDC3BQ96NL0 473 aa20.17■□□□□ 0.82
PDLIM2-221ENST00000622702 PCYOX1Q9UHG3 505 aa20.17■□□□□ 0.82
PDLIM2-221ENST00000622702 FEZ2Q9UHY8 353 aaPredicted RBP20.17■□□□□ 0.82
PDLIM2-221ENST00000622702 MUC6Q6W4X9 2439 aa20.17■□□□□ 0.82
PDLIM2-221ENST00000622702 MUC22E2RYF6 1773 aaPredicted RBP20.16■□□□□ 0.82
PDLIM2-221ENST00000622702 K7ERQ8 282 aa20.16■□□□□ 0.82
PDLIM2-221ENST00000622702 RNF103O00237 685 aa20.16■□□□□ 0.82
PDLIM2-221ENST00000622702 SMAD6O43541 496 aaKnown RBP20.16■□□□□ 0.82
PDLIM2-221ENST00000622702 JCHAINP01591 159 aa20.16■□□□□ 0.82
PDLIM2-221ENST00000622702 TIE1P35590 1138 aa20.16■□□□□ 0.82
PDLIM2-221ENST00000622702 MMP13P45452 471 aa20.16■□□□□ 0.82
PDLIM2-221ENST00000622702 MRPS21P82921 87 aaKnown RBP20.16■□□□□ 0.82
PDLIM2-221ENST00000622702 CSTF1Q05048 431 aaKnown RBP20.16■□□□□ 0.82
PDLIM2-221ENST00000622702 TEX44Q53QW1 395 aa20.16■□□□□ 0.82
PDLIM2-221ENST00000622702 TSSK4Q6SA08 328 aa20.16■□□□□ 0.82
PDLIM2-221ENST00000622702 BBS5Q8N3I7 341 aa20.16■□□□□ 0.82
PDLIM2-221ENST00000622702 ALLCQ8N6M5 410 aa20.16■□□□□ 0.82
PDLIM2-221ENST00000622702 ZNF513Q8N8E2 541 aaPredicted RBP20.16■□□□□ 0.82
PDLIM2-221ENST00000622702 FAM71DQ8N9W8 422 aa20.16■□□□□ 0.82
PDLIM2-221ENST00000622702 SLCO2A1Q92959 643 aa20.16■□□□□ 0.82
PDLIM2-221ENST00000622702 TMEM245Q9H330 911 aa20.16■□□□□ 0.82
PDLIM2-221ENST00000622702 ZDHHC4Q9NPG8 344 aa20.16■□□□□ 0.82
PDLIM2-221ENST00000622702 RBM22Q9NW64 420 aaKnown RBP eCLIP20.16■□□□□ 0.824e-6■■■■□ 24.3
PDLIM2-221ENST00000622702 SEPT10Q9P0V9 454 aa20.16■□□□□ 0.82
PDLIM2-221ENST00000622702 FCF1Q9Y324 198 aaKnown RBP20.16■□□□□ 0.82
PDLIM2-221ENST00000622702 C5orf60A6NFR6 353 aa20.15■□□□□ 0.82
PDLIM2-221ENST00000622702 SGK1O00141 431 aa20.15■□□□□ 0.82
PDLIM2-221ENST00000622702 STK10O94804 968 aaKnown RBP20.15■□□□□ 0.82
PDLIM2-221ENST00000622702 HSPA9P38646 679 aaKnown RBP20.15■□□□□ 0.82
PDLIM2-221ENST00000622702 PTPN5P54829 565 aa20.15■□□□□ 0.82
PDLIM2-221ENST00000622702 GDF10P55107 478 aa20.15■□□□□ 0.82
PDLIM2-221ENST00000622702 ZNF235Q14590 738 aa20.15■□□□□ 0.82
PDLIM2-221ENST00000622702 DLG2Q15700 870 aa20.15■□□□□ 0.82
PDLIM2-221ENST00000622702 FNDC3BQ53EP0 1204 aaKnown RBP20.15■□□□□ 0.82
PDLIM2-221ENST00000622702 C22orf39Q6P5X5 142 aa20.15■□□□□ 0.82
PDLIM2-221ENST00000622702 PCDH20Q8N6Y1 951 aaKnown RBP20.15■□□□□ 0.82
PDLIM2-221ENST00000622702 CNTD1Q8N815 330 aa20.15■□□□□ 0.82
PDLIM2-221ENST00000622702 GRK7Q8WTQ7 553 aa20.15■□□□□ 0.82
PDLIM2-221ENST00000622702 FRS2Q8WU20 508 aa20.15■□□□□ 0.82
PDLIM2-221ENST00000622702 TEKT5Q96M29 485 aa20.15■□□□□ 0.82
PDLIM2-221ENST00000622702 CCDC114Q96M63 670 aa20.15■□□□□ 0.82
PDLIM2-221ENST00000622702 CINPQ9BW66 212 aaPredicted RBP20.15■□□□□ 0.82
PDLIM2-221ENST00000622702 PRMT8Q9NR22 394 aaPredicted RBP20.15■□□□□ 0.82
PDLIM2-221ENST00000622702 HAUS2Q9NVX0 235 aa20.15■□□□□ 0.82
PDLIM2-221ENST00000622702 POLR3BQ9NW08 1133 aaPredicted RBP20.15■□□□□ 0.82
PDLIM2-221ENST00000622702 FBXO4Q9UKT5 387 aa20.15■□□□□ 0.82
PDLIM2-221ENST00000622702 TRHDEQ9UKU6 1024 aa20.15■□□□□ 0.82
PDLIM2-221ENST00000622702 SLC8A2Q9UPR5 921 aa20.15■□□□□ 0.82
PDLIM2-221ENST00000622702 CTAGE15A4D2H0 777 aa20.14■□□□□ 0.81
PDLIM2-221ENST00000622702 ZNF821O75541 412 aaPredicted RBP20.14■□□□□ 0.81
PDLIM2-221ENST00000622702 GCATO75600 419 aa20.14■□□□□ 0.81
PDLIM2-221ENST00000622702 CTAGE8P0CG41 777 aa20.14■□□□□ 0.81
PDLIM2-221ENST00000622702 C2orf54Q08AI8 447 aa20.14■□□□□ 0.81
PDLIM2-221ENST00000622702 HSF5Q4G112 596 aaPredicted RBP20.14■□□□□ 0.81
PDLIM2-221ENST00000622702 SERPINA13PQ6UXR4 307 aa20.14■□□□□ 0.81
PDLIM2-221ENST00000622702 CTAGE6Q86UF2 777 aa20.14■□□□□ 0.81
PDLIM2-221ENST00000622702 CTAGE4Q8IX94 777 aa20.14■□□□□ 0.81
PDLIM2-221ENST00000622702 KLHL7Q8IXQ5 586 aa20.14■□□□□ 0.81
PDLIM2-221ENST00000622702 PLPP6Q8IY26 295 aa20.14■□□□□ 0.81
PDLIM2-221ENST00000622702 ZNF567Q8N184 647 aa20.14■□□□□ 0.81
PDLIM2-221ENST00000622702 IL17RCQ8NAC3 791 aa20.14■□□□□ 0.81
PDLIM2-221ENST00000622702 TSEN2Q8NCE0 465 aaKnown RBP20.14■□□□□ 0.81
PDLIM2-221ENST00000622702 SPATA13Q96N96 652 aa20.14■□□□□ 0.81
PDLIM2-221ENST00000622702 MGME1Q9BQP7 344 aa20.14■□□□□ 0.81
PDLIM2-221ENST00000622702 LHX3Q9UBR4 397 aa20.14■□□□□ 0.81
PDLIM2-221ENST00000622702 ATP8A1Q9Y2Q0 1164 aa20.14■□□□□ 0.81
PDLIM2-221ENST00000622702 TTC34A8MYJ7 566 aa20.13■□□□□ 0.81
PDLIM2-221ENST00000622702 OPHN1O60890 802 aa20.13■□□□□ 0.81
PDLIM2-221ENST00000622702 NEBLO76041 1014 aa20.13■□□□□ 0.81
PDLIM2-221ENST00000622702 KLF8O95600 359 aaPredicted RBP20.13■□□□□ 0.81
PDLIM2-221ENST00000622702 SP9P0CG40 484 aa20.13■□□□□ 0.81
PDLIM2-221ENST00000622702 IL12RB1P42701 662 aa20.13■□□□□ 0.81
PDLIM2-221ENST00000622702 NRLP54845 237 aa20.13■□□□□ 0.81
PDLIM2-221ENST00000622702 RHOAP61586 193 aa20.13■□□□□ 0.81
PDLIM2-221ENST00000622702 NSUN2Q08J23 767 aaKnown RBP eCLIP20.13■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms