RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 IPO11Q9UI26 975 aaKnown RBP13.73□□□□□ -0.21
LINC00540-202ENST00000616974 PPM1HQ9ULR3 514 aa13.73□□□□□ -0.21
LINC00540-202ENST00000616974 NCOR2Q9Y618 2525 aa13.72□□□□□ -0.21
LINC00540-202ENST00000616974 CCDC163A0A0D9SF12 145 aa13.72□□□□□ -0.21
LINC00540-202ENST00000616974 FAM47DPA6NHR8 397 aa13.72□□□□□ -0.21
LINC00540-202ENST00000616974 PATE3B3GLJ2 98 aa13.72□□□□□ -0.21
LINC00540-202ENST00000616974 KRT7P08729 469 aa13.72□□□□□ -0.21
LINC00540-202ENST00000616974 ITPKAP23677 461 aa13.72□□□□□ -0.21
LINC00540-202ENST00000616974 CDKN2BP42772 138 aa13.72□□□□□ -0.21
LINC00540-202ENST00000616974 NDST2P52849 883 aa13.72□□□□□ -0.21
LINC00540-202ENST00000616974 MAXP61244 160 aa13.72□□□□□ -0.21
LINC00540-202ENST00000616974 SEMG2Q02383 582 aa13.72□□□□□ -0.21
LINC00540-202ENST00000616974 ZNF211Q13398 564 aaPredicted RBP13.72□□□□□ -0.21
LINC00540-202ENST00000616974 ELAVL3Q14576 367 aaKnown RBP13.72□□□□□ -0.21
LINC00540-202ENST00000616974 PARP15Q460N3 678 aa13.72□□□□□ -0.21
LINC00540-202ENST00000616974 USP39Q53GS9 565 aaKnown RBP13.72□□□□□ -0.21
LINC00540-202ENST00000616974 ARSIQ5FYB1 569 aa13.72□□□□□ -0.21
LINC00540-202ENST00000616974 RHOT1Q8IXI2 618 aa13.72□□□□□ -0.21
LINC00540-202ENST00000616974 KDM1BQ8NB78 822 aa13.72□□□□□ -0.21
LINC00540-202ENST00000616974 PIP4K2CQ8TBX8 421 aa13.72□□□□□ -0.21
LINC00540-202ENST00000616974 ZNF670Q9BS34 389 aa13.72□□□□□ -0.21
LINC00540-202ENST00000616974 ZDHHC6Q9H6R6 413 aa13.72□□□□□ -0.21
LINC00540-202ENST00000616974 CAAP1Q9H8G2 361 aa13.72□□□□□ -0.21
LINC00540-202ENST00000616974 EBF2Q9HAK2 575 aa13.72□□□□□ -0.21
LINC00540-202ENST00000616974 TMEM51Q9NW97 253 aa13.72□□□□□ -0.21
LINC00540-202ENST00000616974 FBXL12Q9NXK8 326 aa13.72□□□□□ -0.21
LINC00540-202ENST00000616974 SUN2Q9UH99 717 aa13.72□□□□□ -0.21
LINC00540-202ENST00000616974 EVLQ9UI08 416 aaPredicted RBP13.72□□□□□ -0.21
LINC00540-202ENST00000616974 GGT7Q9UJ14 662 aa13.72□□□□□ -0.21
LINC00540-202ENST00000616974 ARID1BQ8NFD5 2236 aaPredicted RBP13.72□□□□□ -0.21
LINC00540-202ENST00000616974 USP27XA6NNY8 438 aa13.72□□□□□ -0.21
LINC00540-202ENST00000616974 BTNL10A8MVZ5 291 aa13.72□□□□□ -0.21
LINC00540-202ENST00000616974 MCF2LO15068 1137 aa13.72□□□□□ -0.21
LINC00540-202ENST00000616974 PIGNO95427 931 aa13.72□□□□□ -0.21
LINC00540-202ENST00000616974 PLA2G5P39877 138 aa13.72□□□□□ -0.21
LINC00540-202ENST00000616974 NNMTP40261 264 aa13.72□□□□□ -0.21
LINC00540-202ENST00000616974 PEX5P50542 639 aa13.72□□□□□ -0.21
LINC00540-202ENST00000616974 YBEYP58557 167 aaPredicted RBP13.72□□□□□ -0.21
LINC00540-202ENST00000616974 RPL6Q02878 288 aaKnown RBP13.72□□□□□ -0.21
LINC00540-202ENST00000616974 KIF5AQ12840 1032 aa13.72□□□□□ -0.21
LINC00540-202ENST00000616974 CNTN1Q12860 1018 aa13.72□□□□□ -0.21
LINC00540-202ENST00000616974 PMS2CLQ68D20 193 aa13.72□□□□□ -0.21
LINC00540-202ENST00000616974 ZNF776Q68DI1 518 aaPredicted RBP13.72□□□□□ -0.21
LINC00540-202ENST00000616974 RETSATQ6NUM9 610 aa13.72□□□□□ -0.21
LINC00540-202ENST00000616974 KDM7AQ6ZMT4 941 aa13.72□□□□□ -0.21
LINC00540-202ENST00000616974 WSB2Q9NYS7 404 aaPredicted RBP13.72□□□□□ -0.21
LINC00540-202ENST00000616974 HECAQ9UBI9 543 aaPredicted RBP13.72□□□□□ -0.21
LINC00540-202ENST00000616974 HEY1Q9Y5J3 304 aa13.72□□□□□ -0.21
LINC00540-202ENST00000616974 GOLGA6L6A8MZA4 724 aa13.71□□□□□ -0.21
LINC00540-202ENST00000616974 PROB1E7EW31 1015 aa13.71□□□□□ -0.21
LINC00540-202ENST00000616974 RNASEH2AO75792 299 aaKnown RBP13.71□□□□□ -0.21
LINC00540-202ENST00000616974 LMNAP02545 664 aaKnown RBP13.71□□□□□ -0.21
LINC00540-202ENST00000616974 CHRNA3P32297 505 aa13.71□□□□□ -0.21
LINC00540-202ENST00000616974 SLC1A1P43005 524 aa13.71□□□□□ -0.21
LINC00540-202ENST00000616974 TAS2R38P59533 333 aa13.71□□□□□ -0.21
LINC00540-202ENST00000616974 PTPRRQ15256 657 aa13.71□□□□□ -0.21
LINC00540-202ENST00000616974 ZC3H14Q6PJT7 736 aaKnown RBP13.71□□□□□ -0.21
LINC00540-202ENST00000616974 LAYNQ6UX15 382 aa13.71□□□□□ -0.21
LINC00540-202ENST00000616974 ZSWIM9Q86XI8 627 aa13.71□□□□□ -0.21
LINC00540-202ENST00000616974 KIAA1524Q8TCG1 905 aa13.71□□□□□ -0.21
LINC00540-202ENST00000616974 SMIM14Q96QK8 99 aa13.71□□□□□ -0.21
LINC00540-202ENST00000616974 PABPC3Q9H361 631 aaKnown RBP13.71□□□□□ -0.21
LINC00540-202ENST00000616974 UBA2Q9UBT2 640 aaPredicted RBP13.71□□□□□ -0.21
LINC00540-202ENST00000616974 AKAP13Q12802 2813 aa13.71□□□□□ -0.22
LINC00540-202ENST00000616974 A0A0U1RQS6 177 aa13.7□□□□□ -0.22
LINC00540-202ENST00000616974 TARSL2A2RTX5 802 aaKnown RBP13.7□□□□□ -0.22
LINC00540-202ENST00000616974 KPNA3O00505 521 aaPredicted RBP13.7□□□□□ -0.22
LINC00540-202ENST00000616974 KRIT1O00522 736 aa13.7□□□□□ -0.22
LINC00540-202ENST00000616974 DDX3YO15523 660 aaKnown RBP13.7□□□□□ -0.22
LINC00540-202ENST00000616974 PRKCGP05129 697 aa13.7□□□□□ -0.22
LINC00540-202ENST00000616974 PYGMP11217 842 aa13.7□□□□□ -0.22
LINC00540-202ENST00000616974 TGM1P22735 817 aa13.7□□□□□ -0.22
LINC00540-202ENST00000616974 HTR7P34969 479 aa13.7□□□□□ -0.22
LINC00540-202ENST00000616974 CTNNA1P35221 906 aaKnown RBP13.7□□□□□ -0.22
LINC00540-202ENST00000616974 PPP2CBP62714 309 aa13.7□□□□□ -0.22
LINC00540-202ENST00000616974 PPP2CAP67775 309 aa13.7□□□□□ -0.22
LINC00540-202ENST00000616974 PAFAH1B3Q15102 231 aaKnown RBP13.7□□□□□ -0.22
LINC00540-202ENST00000616974 PDK2Q15119 407 aa13.7□□□□□ -0.22
LINC00540-202ENST00000616974 AGBL4Q5VU57 503 aa13.7□□□□□ -0.22
LINC00540-202ENST00000616974 SLC9A4Q6AI14 798 aa13.7□□□□□ -0.22
LINC00540-202ENST00000616974 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP13.7□□□□□ -0.22
LINC00540-202ENST00000616974 SPOCD1Q6ZMY3 1216 aa13.7□□□□□ -0.22
LINC00540-202ENST00000616974 RYBPQ8N488 228 aaPredicted RBP13.7□□□□□ -0.22
LINC00540-202ENST00000616974 HSPA12BQ96MM6 686 aa13.7□□□□□ -0.22
LINC00540-202ENST00000616974 NCAPGQ9BPX3 1015 aa13.7□□□□□ -0.22
LINC00540-202ENST00000616974 ARRDC1-AS1Q9H2J1 176 aa13.7□□□□□ -0.22
LINC00540-202ENST00000616974 SP110Q9HB58 689 aa13.7□□□□□ -0.22
LINC00540-202ENST00000616974 HPCAL4Q9UM19 191 aa13.7□□□□□ -0.22
LINC00540-202ENST00000616974 ITM2BQ9Y287 266 aa13.7□□□□□ -0.22
LINC00540-202ENST00000616974 PPP2R2CQ9Y2T4 447 aa13.7□□□□□ -0.22
LINC00540-202ENST00000616974 CACNA1AO00555 2505 aa13.7□□□□□ -0.22
LINC00540-202ENST00000616974 TCRBV7S2A1N4TA0A589 114 aa13.7□□□□□ -0.22
LINC00540-202ENST00000616974 ARHGAP42A6NI28 874 aa13.7□□□□□ -0.22
LINC00540-202ENST00000616974 SPINT1O43278 529 aa13.7□□□□□ -0.22
LINC00540-202ENST00000616974 PSTPIP1O43586 416 aa13.7□□□□□ -0.22
LINC00540-202ENST00000616974 GFRA3O60609 400 aa13.7□□□□□ -0.22
LINC00540-202ENST00000616974 DNTTP04053 509 aa13.7□□□□□ -0.22
LINC00540-202ENST00000616974 UGT2B4P06133 528 aa13.7□□□□□ -0.22
LINC00540-202ENST00000616974 ACADMP11310 421 aa13.7□□□□□ -0.22
LINC00540-202ENST00000616974 DHPSP49366 369 aaPredicted RBP13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms