RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 TBC1D3Q8IZP1 549 aaPredicted RBP19.71■□□□□ 0.75
UPF1-212ENST00000601689 BBS5Q8N3I7 341 aa19.71■□□□□ 0.75
UPF1-212ENST00000601689 OR2AP1Q8NGE2 309 aa19.71■□□□□ 0.75
UPF1-212ENST00000601689 CALR3Q96L12 384 aaKnown RBP19.71■□□□□ 0.75
UPF1-212ENST00000601689 EDEM2Q9BV94 578 aa19.71■□□□□ 0.75
UPF1-212ENST00000601689 OSBPL1AQ9BXW6 950 aa19.71■□□□□ 0.75
UPF1-212ENST00000601689 TM6SF2Q9BZW4 377 aa19.71■□□□□ 0.75
UPF1-212ENST00000601689 OSGEPQ9NPF4 335 aa19.71■□□□□ 0.75
UPF1-212ENST00000601689 NUMA1Q14980 2115 aa19.7■□□□□ 0.74
UPF1-212ENST00000601689 DFFAO00273 331 aa19.7■□□□□ 0.74
UPF1-212ENST00000601689 CDC25BP30305 580 aa19.7■□□□□ 0.74
UPF1-212ENST00000601689 CCNHP51946 323 aaPredicted RBP19.7■□□□□ 0.74
UPF1-212ENST00000601689 RHOAP61586 193 aa19.7■□□□□ 0.74
UPF1-212ENST00000601689 GRM3Q14832 879 aa19.7■□□□□ 0.74
UPF1-212ENST00000601689 RSPO4Q2I0M5 234 aaPredicted RBP19.7■□□□□ 0.74
UPF1-212ENST00000601689 ARSIQ5FYB1 569 aa19.7■□□□□ 0.74
UPF1-212ENST00000601689 CYP4V2Q6ZWL3 525 aaPredicted RBP19.7■□□□□ 0.74
UPF1-212ENST00000601689 POLNQ7Z5Q5 900 aa19.7■□□□□ 0.74
UPF1-212ENST00000601689 PRPF39Q86UA1 669 aaKnown RBP19.7■□□□□ 0.74
UPF1-212ENST00000601689 CELF6Q96J87 481 aaKnown RBP19.7■□□□□ 0.74
UPF1-212ENST00000601689 GDAP1L1Q96MZ0 367 aa19.7■□□□□ 0.74
UPF1-212ENST00000601689 RTKNQ9BST9 563 aa19.7■□□□□ 0.74
UPF1-212ENST00000601689 CALN1Q9BXU9 219 aa19.7■□□□□ 0.74
UPF1-212ENST00000601689 ZDHHC5Q9C0B5 715 aa19.7■□□□□ 0.74
UPF1-212ENST00000601689 SMOC1Q9H4F8 434 aa19.7■□□□□ 0.74
UPF1-212ENST00000601689 C6orf106Q9H6K1 298 aaPredicted RBP19.7■□□□□ 0.74
UPF1-212ENST00000601689 ZDHHC6Q9H6R6 413 aa19.7■□□□□ 0.74
UPF1-212ENST00000601689 LRRC19Q9H756 370 aa19.7■□□□□ 0.74
UPF1-212ENST00000601689 TMEM74BQ9NUR3 256 aa19.7■□□□□ 0.74
UPF1-212ENST00000601689 HAUS2Q9NVX0 235 aa19.7■□□□□ 0.74
UPF1-212ENST00000601689 EIF2B4Q9UI10 523 aaKnown RBP19.7■□□□□ 0.74
UPF1-212ENST00000601689 FRYLO94915 3013 aa19.7■□□□□ 0.74
UPF1-212ENST00000601689 GVINP1Q7Z2Y8 2422 aa19.69■□□□□ 0.74
UPF1-212ENST00000601689 BCAT2O15382 392 aaPredicted RBP19.69■□□□□ 0.74
UPF1-212ENST00000601689 PALMO75781 387 aa19.69■□□□□ 0.74
UPF1-212ENST00000601689 MTA2O94776 668 aa19.69■□□□□ 0.74
UPF1-212ENST00000601689 TMCC1O94876 653 aa19.69■□□□□ 0.74
UPF1-212ENST00000601689 MAOBP27338 520 aa19.69■□□□□ 0.74
UPF1-212ENST00000601689 NUDT1P36639 197 aa19.69■□□□□ 0.74
UPF1-212ENST00000601689 PAPOLAP51003 745 aaKnown RBP19.69■□□□□ 0.74
UPF1-212ENST00000601689 LIMK1P53667 647 aa19.69■□□□□ 0.74
UPF1-212ENST00000601689 ADPRHP54922 357 aa19.69■□□□□ 0.74
UPF1-212ENST00000601689 IRX4P78413 519 aa19.69■□□□□ 0.74
UPF1-212ENST00000601689 RFTN1Q14699 578 aaPredicted RBP19.69■□□□□ 0.74
UPF1-212ENST00000601689 TMCO4Q5TGY1 634 aa19.69■□□□□ 0.74
UPF1-212ENST00000601689 FBXL19Q6PCT2 694 aa19.69■□□□□ 0.74
UPF1-212ENST00000601689 NCEH1Q6PIU2 408 aa19.69■□□□□ 0.74
UPF1-212ENST00000601689 ADAT2Q7Z6V5 191 aaKnown RBP19.69■□□□□ 0.74
UPF1-212ENST00000601689 AADATQ8N5Z0 425 aa19.69■□□□□ 0.74
UPF1-212ENST00000601689 GRIN3AQ8TCU5 1115 aa19.69■□□□□ 0.74
UPF1-212ENST00000601689 CSPG4P5Q96PW8 444 aa19.69■□□□□ 0.74
UPF1-212ENST00000601689 SLC39A8Q9C0K1 460 aa19.69■□□□□ 0.74
UPF1-212ENST00000601689 NOL6Q9H6R4 1146 aaKnown RBP19.69■□□□□ 0.74
UPF1-212ENST00000601689 PCDH18Q9HCL0 1135 aa19.69■□□□□ 0.74
UPF1-212ENST00000601689 TMEM9BQ9NQ34 198 aa19.69■□□□□ 0.74
UPF1-212ENST00000601689 ZBTB32Q9Y2Y4 487 aaPredicted RBP19.69■□□□□ 0.74
UPF1-212ENST00000601689 PCDHA13Q9Y5I0 950 aa19.69■□□□□ 0.74
UPF1-212ENST00000601689 EPN1Q9Y6I3 576 aaPredicted RBP19.69■□□□□ 0.74
UPF1-212ENST00000601689 KRIT1O00522 736 aa19.68■□□□□ 0.74
UPF1-212ENST00000601689 LEFTY1O75610 366 aa19.68■□□□□ 0.74
UPF1-212ENST00000601689 AMPD1P23109 780 aa19.68■□□□□ 0.74
UPF1-212ENST00000601689 CD27P26842 260 aa19.68■□□□□ 0.74
UPF1-212ENST00000601689 RENBPP51606 427 aa19.68■□□□□ 0.74
UPF1-212ENST00000601689 IL10RBQ08334 325 aa19.68■□□□□ 0.74
UPF1-212ENST00000601689 DPYSQ14117 519 aa19.68■□□□□ 0.74
UPF1-212ENST00000601689 POM121L1PQ3SYA9 428 aa19.68■□□□□ 0.74
UPF1-212ENST00000601689 SLC45A4Q5BKX6 768 aa19.68■□□□□ 0.74
UPF1-212ENST00000601689 LEKR1Q6ZMV7 388 aa19.68■□□□□ 0.74
UPF1-212ENST00000601689 ERN2Q76MJ5 926 aaKnown RBP19.68■□□□□ 0.74
UPF1-212ENST00000601689 LRRC49Q8IUZ0 686 aa19.68■□□□□ 0.74
UPF1-212ENST00000601689 PAF1Q8N7H5 531 aa19.68■□□□□ 0.74
UPF1-212ENST00000601689 BIRC7Q96CA5 298 aa19.68■□□□□ 0.74
UPF1-212ENST00000601689 BAG1Q99933 345 aaPredicted RBP19.68■□□□□ 0.74
UPF1-212ENST00000601689 ZNF670Q9BS34 389 aa19.68■□□□□ 0.74
UPF1-212ENST00000601689 CINPQ9BW66 212 aaPredicted RBP19.68■□□□□ 0.74
UPF1-212ENST00000601689 MAK16Q9BXY0 300 aaKnown RBP19.68■□□□□ 0.74
UPF1-212ENST00000601689 PREBQ9HCU5 417 aa19.68■□□□□ 0.74
UPF1-212ENST00000601689 SARDHQ9UL12 918 aa19.68■□□□□ 0.74
UPF1-212ENST00000601689 LNP1A1A4G5 178 aa19.67■□□□□ 0.74
UPF1-212ENST00000601689 PATE3B3GLJ2 98 aa19.67■□□□□ 0.74
UPF1-212ENST00000601689 PLRG1O43660 514 aaKnown RBP19.67■□□□□ 0.74
UPF1-212ENST00000601689 SPOPO43791 374 aa19.67■□□□□ 0.74
UPF1-212ENST00000601689 PRAMEF11O60813 436 aa19.67■□□□□ 0.74
UPF1-212ENST00000601689 NDUFA10O95299 355 aa19.67■□□□□ 0.74
UPF1-212ENST00000601689 LCA5LO95447 670 aa19.67■□□□□ 0.74
UPF1-212ENST00000601689 TCF4P15884 667 aa19.67■□□□□ 0.74
UPF1-212ENST00000601689 DRD3P35462 400 aa19.67■□□□□ 0.74
UPF1-212ENST00000601689 CCR5P51681 352 aa19.67■□□□□ 0.74
UPF1-212ENST00000601689 AFF3P51826 1226 aaKnown RBP19.67■□□□□ 0.74
UPF1-212ENST00000601689 NEK3P51956 506 aa19.67■□□□□ 0.74
UPF1-212ENST00000601689 NAP1L1P55209 391 aaKnown RBP19.67■□□□□ 0.74
UPF1-212ENST00000601689 CNTN1Q12860 1018 aa19.67■□□□□ 0.74
UPF1-212ENST00000601689 TCEAL1Q15170 157 aa19.67■□□□□ 0.74
UPF1-212ENST00000601689 MYLK3Q32MK0 819 aa19.67■□□□□ 0.74
UPF1-212ENST00000601689 CFAP58Q5T655 872 aa19.67■□□□□ 0.74
UPF1-212ENST00000601689 TCEAL6Q6IPX3 200 aa19.67■□□□□ 0.74
UPF1-212ENST00000601689 NEK5Q6P3R8 708 aa19.67■□□□□ 0.74
UPF1-212ENST00000601689 IL27RAQ6UWB1 636 aa19.67■□□□□ 0.74
UPF1-212ENST00000601689 ZCCHC9Q8N567 271 aaKnown RBP19.67■□□□□ 0.74
UPF1-212ENST00000601689 CHST14Q8NCH0 376 aa19.67■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms