RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 A0A087WZ62 844 aa18.6■□□□□ 0.57
UPF1-210ENST00000600689 ACOT8O14734 319 aa18.6■□□□□ 0.57
UPF1-210ENST00000600689 YAP1P46937 504 aaKnown RBP18.6■□□□□ 0.57
UPF1-210ENST00000600689 SLC10A6Q3KNW5 377 aa18.6■□□□□ 0.57
UPF1-210ENST00000600689 OGFOD2Q6N063 350 aa18.6■□□□□ 0.57
UPF1-210ENST00000600689 PATL1Q86TB9 770 aaKnown RBP18.6■□□□□ 0.57
UPF1-210ENST00000600689 FDXACB1Q9BRP7 624 aaPredicted RBP18.6■□□□□ 0.57
UPF1-210ENST00000600689 MAF1Q9H063 256 aa18.6■□□□□ 0.57
UPF1-210ENST00000600689 TUT1Q9H6E5 874 aaKnown RBP18.6■□□□□ 0.57
UPF1-210ENST00000600689 DPP3Q9NY33 737 aa18.6■□□□□ 0.57
UPF1-210ENST00000600689 GMEB1Q9Y692 573 aa18.6■□□□□ 0.57
UPF1-210ENST00000600689 MDM4O15151 490 aa18.6■□□□□ 0.57
UPF1-210ENST00000600689 VTNP04004 478 aa18.6■□□□□ 0.57
UPF1-210ENST00000600689 ZNF23P17027 643 aa18.6■□□□□ 0.57
UPF1-210ENST00000600689 NMBRP28336 390 aa18.6■□□□□ 0.57
UPF1-210ENST00000600689 SULT1E1P49888 294 aa18.6■□□□□ 0.57
UPF1-210ENST00000600689 PRPSAP1Q14558 356 aa18.6■□□□□ 0.57
UPF1-210ENST00000600689 GPR107Q5VW38 600 aa18.6■□□□□ 0.57
UPF1-210ENST00000600689 ERI1Q8IV48 349 aaKnown RBP18.6■□□□□ 0.57
UPF1-210ENST00000600689 FSTL5Q8N475 847 aaPredicted RBP18.6■□□□□ 0.57
UPF1-210ENST00000600689 KCNN1Q92952 543 aa18.6■□□□□ 0.57
UPF1-210ENST00000600689 THAP11Q96EK4 314 aa18.6■□□□□ 0.57
UPF1-210ENST00000600689 SLC45A3Q96JT2 553 aa18.6■□□□□ 0.57
UPF1-210ENST00000600689 ZBTB26Q9HCK0 441 aa18.6■□□□□ 0.57
UPF1-210ENST00000600689 OLAHQ9NV23 265 aa18.6■□□□□ 0.57
UPF1-210ENST00000600689 EGFL7Q9UHF1 273 aa18.6■□□□□ 0.57
UPF1-210ENST00000600689 SOCS2O14508 198 aa18.59■□□□□ 0.57
UPF1-210ENST00000600689 MT-ND1P03886 318 aa18.59■□□□□ 0.57
UPF1-210ENST00000600689 SETSIPP0DME0 302 aa18.59■□□□□ 0.57
UPF1-210ENST00000600689 GRIA3P42263 894 aa18.59■□□□□ 0.57
UPF1-210ENST00000600689 GRM1Q13255 1194 aa18.59■□□□□ 0.57
UPF1-210ENST00000600689 METTL21CQ5VZV1 264 aa18.59■□□□□ 0.57
UPF1-210ENST00000600689 GPR141Q7Z602 305 aa18.59■□□□□ 0.57
UPF1-210ENST00000600689 CYGBQ8WWM9 190 aa18.59■□□□□ 0.57
UPF1-210ENST00000600689 CIDEBQ9UHD4 219 aa18.59■□□□□ 0.57
UPF1-210ENST00000600689 GTF3C5Q9Y5Q8 519 aaPredicted RBP18.59■□□□□ 0.57
UPF1-210ENST00000600689 PRORSD1PA6NEY8 169 aa18.59■□□□□ 0.57
UPF1-210ENST00000600689 J3QRK9 145 aa18.59■□□□□ 0.57
UPF1-210ENST00000600689 GNL1P36915 607 aaPredicted RBP18.59■□□□□ 0.57
UPF1-210ENST00000600689 CTBSQ01459 385 aa18.59■□□□□ 0.57
UPF1-210ENST00000600689 DPYSL2Q16555 572 aa18.59■□□□□ 0.57
UPF1-210ENST00000600689 TTC33Q6PID6 262 aaPredicted RBP18.59■□□□□ 0.57
UPF1-210ENST00000600689 NT5DC4Q86YG4 428 aa18.59■□□□□ 0.57
UPF1-210ENST00000600689 C12orf43Q96C57 262 aaKnown RBP18.59■□□□□ 0.57
UPF1-210ENST00000600689 FBXL8Q96CD0 374 aa18.59■□□□□ 0.57
UPF1-210ENST00000600689 NXNL1Q96CM4 212 aa18.59■□□□□ 0.57
UPF1-210ENST00000600689 NAA50Q9GZZ1 169 aaKnown RBP18.59■□□□□ 0.57
UPF1-210ENST00000600689 BLOC1S6Q9UL45 172 aa18.59■□□□□ 0.57
UPF1-210ENST00000600689 DNAJC25-GNG10A0A024R161 153 aa18.58■□□□□ 0.57
UPF1-210ENST00000600689 IGKV6-21A0A0C4DH24 114 aa18.58■□□□□ 0.57
UPF1-210ENST00000600689 TRIM38O00635 465 aa18.58■□□□□ 0.57
UPF1-210ENST00000600689 CDK9P50750 372 aaKnown RBP18.58■□□□□ 0.57
UPF1-210ENST00000600689 RPL26P61254 145 aaKnown RBP18.58■□□□□ 0.57
UPF1-210ENST00000600689 MXD4Q14582 209 aaPredicted RBP18.58■□□□□ 0.57
UPF1-210ENST00000600689 DENND6AQ8IWF6 608 aa18.58■□□□□ 0.57
UPF1-210ENST00000600689 RNF168Q8IYW5 571 aaPredicted RBP18.58■□□□□ 0.57
UPF1-210ENST00000600689 FIBCD1Q8N539 461 aa18.58■□□□□ 0.57
UPF1-210ENST00000600689 FAM167AQ96KS9 214 aa18.58■□□□□ 0.57
UPF1-210ENST00000600689 LRRC40Q9H9A6 602 aa18.58■□□□□ 0.57
UPF1-210ENST00000600689 PLK2Q9NYY3 685 aa18.58■□□□□ 0.57
UPF1-210ENST00000600689 AKT3Q9Y243 479 aa18.58■□□□□ 0.57
UPF1-210ENST00000600689 NME7Q9Y5B8 376 aa18.58■□□□□ 0.57
UPF1-210ENST00000600689 A0A1W2PPW3 197 aa18.58■□□□□ 0.56
UPF1-210ENST00000600689 PSMD12O00232 456 aaPredicted RBP18.58■□□□□ 0.56
UPF1-210ENST00000600689 VARSP26640 1264 aaKnown RBP18.58■□□□□ 0.56
UPF1-210ENST00000600689 LIPMQ5VYY2 423 aa18.58■□□□□ 0.56
UPF1-210ENST00000600689 DEFB106AQ8N104 65 aa18.58■□□□□ 0.56
UPF1-210ENST00000600689 CANT1Q8WVQ1 401 aa18.58■□□□□ 0.56
UPF1-210ENST00000600689 SLC2A11Q9BYW1 496 aa18.58■□□□□ 0.56
UPF1-210ENST00000600689 PTPRHQ9HD43 1115 aa18.58■□□□□ 0.56
UPF1-210ENST00000600689 H3BNH8 94 aa18.58■□□□□ 0.56
UPF1-210ENST00000600689 DLX3O60479 287 aa18.58■□□□□ 0.56
UPF1-210ENST00000600689 SLC25A27O95847 323 aa18.58■□□□□ 0.56
UPF1-210ENST00000600689 FAM163BP0C2L3 166 aa18.58■□□□□ 0.56
UPF1-210ENST00000600689 ZFXP17010 805 aaPredicted RBP18.58■□□□□ 0.56
UPF1-210ENST00000600689 GJA5P36382 358 aa18.58■□□□□ 0.56
UPF1-210ENST00000600689 HSPA13P48723 471 aa18.58■□□□□ 0.56
UPF1-210ENST00000600689 MPP1Q00013 466 aa18.58■□□□□ 0.56
UPF1-210ENST00000600689 NEDD8Q15843 81 aa18.58■□□□□ 0.56
UPF1-210ENST00000600689 CTU1Q7Z7A3 348 aaKnown RBP18.58■□□□□ 0.56
UPF1-210ENST00000600689 IFNEQ86WN2 208 aa18.58■□□□□ 0.56
UPF1-210ENST00000600689 ZNF513Q8N8E2 541 aaPredicted RBP18.58■□□□□ 0.56
UPF1-210ENST00000600689 SNX10Q9Y5X0 201 aa18.58■□□□□ 0.56
UPF1-210ENST00000600689 RNF103-CHMP3A0A140T963 221 aa18.57■□□□□ 0.56
UPF1-210ENST00000600689 C9IYK1 514 aa18.57■□□□□ 0.56
UPF1-210ENST00000600689 CXCL11O14625 94 aa18.57■□□□□ 0.56
UPF1-210ENST00000600689 ZBTB24O43167 697 aaPredicted RBP18.57■□□□□ 0.56
UPF1-210ENST00000600689 HTRA2O43464 458 aaPredicted RBP18.57■□□□□ 0.56
UPF1-210ENST00000600689 GPC4O75487 556 aa18.57■□□□□ 0.56
UPF1-210ENST00000600689 MAP7D1Q3KQU3 841 aa18.57■□□□□ 0.56
UPF1-210ENST00000600689 LSMEM2Q8N112 164 aa18.57■□□□□ 0.56
UPF1-210ENST00000600689 PHF21BQ96EK2 531 aa18.57■□□□□ 0.56
UPF1-210ENST00000600689 FTHL17Q9BXU8 183 aa18.57■□□□□ 0.56
UPF1-210ENST00000600689 DRC3Q9H069 523 aa18.57■□□□□ 0.56
UPF1-210ENST00000600689 CHST12Q9NRB3 414 aa18.57■□□□□ 0.56
UPF1-210ENST00000600689 CNOT6Q9ULM6 557 aaKnown RBP18.57■□□□□ 0.56
UPF1-210ENST00000600689 SH3GLB1Q9Y371 365 aa18.57■□□□□ 0.56
UPF1-210ENST00000600689 TMEM114B3SHH9 223 aa18.57■□□□□ 0.56
UPF1-210ENST00000600689 ZNF189O75820 626 aaPredicted RBP18.57■□□□□ 0.56
UPF1-210ENST00000600689 SBK3P0C264 359 aa18.57■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms