RNA–Protein interactions for RNA: ENST00000599575.5

SHKBP1-219, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 810 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-219ENST00000599575 MKRN2Q9H000 416 aaKnown RBP16.84■□□□□ 0.29
SHKBP1-219ENST00000599575 CES2O00748 559 aa16.83■□□□□ 0.28
SHKBP1-219ENST00000599575 KCNK3O14649 394 aa16.83■□□□□ 0.28
SHKBP1-219ENST00000599575 PEX11BO96011 259 aa16.83■□□□□ 0.28
SHKBP1-219ENST00000599575 IGLV3-19P01714 112 aa16.83■□□□□ 0.28
SHKBP1-219ENST00000599575 DNTTP04053 509 aa16.83■□□□□ 0.28
SHKBP1-219ENST00000599575 ACADMP11310 421 aa16.83■□□□□ 0.28
SHKBP1-219ENST00000599575 NDUFV2P19404 249 aa16.83■□□□□ 0.28
SHKBP1-219ENST00000599575 C5AR1P21730 350 aa16.83■□□□□ 0.28
SHKBP1-219ENST00000599575 OXTRP30559 389 aa16.83■□□□□ 0.28
SHKBP1-219ENST00000599575 DYNLT1P63172 113 aa16.83■□□□□ 0.28
SHKBP1-219ENST00000599575 ZNF235Q14590 738 aa16.83■□□□□ 0.28
SHKBP1-219ENST00000599575 USP30Q70CQ3 517 aa16.83■□□□□ 0.28
SHKBP1-219ENST00000599575 CCDC13Q8IYE1 715 aa16.83■□□□□ 0.28
SHKBP1-219ENST00000599575 KMT2EQ8IZD2 1858 aa16.83■□□□□ 0.28
SHKBP1-219ENST00000599575 PGBD3Q8N328 593 aa16.83■□□□□ 0.28
SHKBP1-219ENST00000599575 CCNYQ8ND76 341 aa16.83■□□□□ 0.28
SHKBP1-219ENST00000599575 HMGB4Q8WW32 186 aa16.83■□□□□ 0.28
SHKBP1-219ENST00000599575 PBKQ96KB5 322 aa16.83■□□□□ 0.28
SHKBP1-219ENST00000599575 FAM129BQ96TA1 746 aa16.83■□□□□ 0.28
SHKBP1-219ENST00000599575 HEPHQ9BQS7 1158 aa16.83■□□□□ 0.28
SHKBP1-219ENST00000599575 HEMGNQ9BXL5 484 aa16.83■□□□□ 0.28
SHKBP1-219ENST00000599575 CPEB1Q9BZB8 566 aaKnown RBP16.83■□□□□ 0.28
SHKBP1-219ENST00000599575 PPM1HQ9ULR3 514 aa16.83■□□□□ 0.28
SHKBP1-219ENST00000599575 ZKSCAN5Q9Y2L8 839 aa16.83■□□□□ 0.28
SHKBP1-219ENST00000599575 FCF1Q9Y324 198 aaKnown RBP16.83■□□□□ 0.28
SHKBP1-219ENST00000599575 CCNB1P14635 433 aa16.82■□□□□ 0.28
SHKBP1-219ENST00000599575 CHRNA3P32297 505 aa16.82■□□□□ 0.28
SHKBP1-219ENST00000599575 IFI35P80217 286 aaPredicted RBP16.82■□□□□ 0.28
SHKBP1-219ENST00000599575 KLF1Q13351 362 aaPredicted RBP16.82■□□□□ 0.28
SHKBP1-219ENST00000599575 NOMO1Q15155 1222 aa16.82■□□□□ 0.28
SHKBP1-219ENST00000599575 CYTH1Q15438 398 aa16.82■□□□□ 0.28
SHKBP1-219ENST00000599575 CST6Q15828 149 aa16.82■□□□□ 0.28
SHKBP1-219ENST00000599575 MYLK3Q32MK0 819 aa16.82■□□□□ 0.28
SHKBP1-219ENST00000599575 DCAF12L1Q5VU92 463 aa16.82■□□□□ 0.28
SHKBP1-219ENST00000599575 DPY19L3Q6ZPD9 716 aa16.82■□□□□ 0.28
SHKBP1-219ENST00000599575 ARHGAP36Q6ZRI8 547 aa16.82■□□□□ 0.28
SHKBP1-219ENST00000599575 TP53INP2Q8IXH6 220 aa16.82■□□□□ 0.28
SHKBP1-219ENST00000599575 ZNF366Q8N895 744 aa16.82■□□□□ 0.28
SHKBP1-219ENST00000599575 HCAR2Q8TDS4 363 aa16.82■□□□□ 0.28
SHKBP1-219ENST00000599575 TFB1MQ8WVM0 346 aaKnown RBP16.82■□□□□ 0.28
SHKBP1-219ENST00000599575 PPP1R16AQ96I34 528 aa16.82■□□□□ 0.28
SHKBP1-219ENST00000599575 SPACA7Q96KW9 195 aa16.82■□□□□ 0.28
SHKBP1-219ENST00000599575 TUBGCP5Q96RT8 1024 aa16.82■□□□□ 0.28
SHKBP1-219ENST00000599575 VAT1Q99536 393 aa16.82■□□□□ 0.28
SHKBP1-219ENST00000599575 SEMA4AQ9H3S1 761 aa16.82■□□□□ 0.28
SHKBP1-219ENST00000599575 ITM2CQ9NQX7 267 aa16.82■□□□□ 0.28
SHKBP1-219ENST00000599575 USP36Q9P275 1121 aaKnown RBP16.82■□□□□ 0.28
SHKBP1-219ENST00000599575 HECAQ9UBI9 543 aaPredicted RBP16.82■□□□□ 0.28
SHKBP1-219ENST00000599575 IL36AQ9UHA7 158 aa16.82■□□□□ 0.28
SHKBP1-219ENST00000599575 USP27XA6NNY8 438 aa16.81■□□□□ 0.28
SHKBP1-219ENST00000599575 PRLRP16471 622 aa16.81■□□□□ 0.28
SHKBP1-219ENST00000599575 MMP13P45452 471 aa16.81■□□□□ 0.28
SHKBP1-219ENST00000599575 NUMBP49757 651 aa16.81■□□□□ 0.28
SHKBP1-219ENST00000599575 DNA2P51530 1060 aa16.81■□□□□ 0.28
SHKBP1-219ENST00000599575 CCNHP51946 323 aaPredicted RBP16.81■□□□□ 0.28
SHKBP1-219ENST00000599575 GNG11P61952 73 aa16.81■□□□□ 0.28
SHKBP1-219ENST00000599575 AP1S1P61966 158 aa16.81■□□□□ 0.28
SHKBP1-219ENST00000599575 RPS14P62263 151 aaKnown RBP16.81■□□□□ 0.28
SHKBP1-219ENST00000599575 ADCY2Q08462 1091 aa16.81■□□□□ 0.28
SHKBP1-219ENST00000599575 SLC10A7Q0GE19 358 aa16.81■□□□□ 0.28
SHKBP1-219ENST00000599575 ZNF211Q13398 564 aaPredicted RBP16.81■□□□□ 0.28
SHKBP1-219ENST00000599575 PRKD1Q15139 912 aaPredicted RBP16.81■□□□□ 0.28
SHKBP1-219ENST00000599575 SPDYCQ5MJ68 293 aa16.81■□□□□ 0.28
SHKBP1-219ENST00000599575 STK40Q8N2I9 435 aa16.81■□□□□ 0.28
SHKBP1-219ENST00000599575 SLC35F6Q8N357 371 aa16.81■□□□□ 0.28
SHKBP1-219ENST00000599575 ZNF641Q96N77 438 aaPredicted RBP16.81■□□□□ 0.28
SHKBP1-219ENST00000599575 NAP1L3Q99457 506 aaPredicted RBP16.81■□□□□ 0.28
SHKBP1-219ENST00000599575 MGME1Q9BQP7 344 aa16.81■□□□□ 0.28
SHKBP1-219ENST00000599575 POLR1EQ9GZS1 481 aaKnown RBP16.81■□□□□ 0.28
SHKBP1-219ENST00000599575 HOMER3Q9NSC5 361 aa16.81■□□□□ 0.28
SHKBP1-219ENST00000599575 LHX3Q9UBR4 397 aa16.81■□□□□ 0.28
SHKBP1-219ENST00000599575 TTC7AQ9ULT0 858 aaPredicted RBP16.81■□□□□ 0.28
SHKBP1-219ENST00000599575 FZD4Q9ULV1 537 aa16.81■□□□□ 0.28
SHKBP1-219ENST00000599575 NCKAP1Q9Y2A7 1128 aa16.81■□□□□ 0.28
SHKBP1-219ENST00000599575 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP16.8■□□□□ 0.28
SHKBP1-219ENST00000599575 A0A1W2PQ67 120 aa16.8■□□□□ 0.28
SHKBP1-219ENST00000599575 SLC7A4O43246 635 aa16.8■□□□□ 0.28
SHKBP1-219ENST00000599575 LILRB5O75023 590 aa16.8■□□□□ 0.28
SHKBP1-219ENST00000599575 NEBLO76041 1014 aa16.8■□□□□ 0.28
SHKBP1-219ENST00000599575 IL1BP01584 269 aa16.8■□□□□ 0.28
SHKBP1-219ENST00000599575 TUBB4AP04350 444 aa16.8■□□□□ 0.28
SHKBP1-219ENST00000599575 VAV1P15498 845 aa16.8■□□□□ 0.28
SHKBP1-219ENST00000599575 SLC8A1P32418 973 aa16.8■□□□□ 0.28
SHKBP1-219ENST00000599575 P2RY2P41231 377 aa16.8■□□□□ 0.28
SHKBP1-219ENST00000599575 SUOXP51687 545 aa16.8■□□□□ 0.28
SHKBP1-219ENST00000599575 AP1B1Q10567 949 aa16.8■□□□□ 0.28
SHKBP1-219ENST00000599575 SLC45A4Q5BKX6 768 aa16.8■□□□□ 0.28
SHKBP1-219ENST00000599575 ALG1LQ6GMV1 187 aa16.8■□□□□ 0.28
SHKBP1-219ENST00000599575 TSSK4Q6SA08 328 aa16.8■□□□□ 0.28
SHKBP1-219ENST00000599575 SLC36A4Q6YBV0 504 aa16.8■□□□□ 0.28
SHKBP1-219ENST00000599575 LEKR1Q6ZMV7 388 aa16.8■□□□□ 0.28
SHKBP1-219ENST00000599575 SLC13A5Q86YT5 568 aaPredicted RBP16.8■□□□□ 0.28
SHKBP1-219ENST00000599575 MMAAQ8IVH4 418 aaKnown RBP16.8■□□□□ 0.28
SHKBP1-219ENST00000599575 CDKL3Q8IVW4 592 aaPredicted RBP16.8■□□□□ 0.28
SHKBP1-219ENST00000599575 ACTL9Q8TC94 416 aa16.8■□□□□ 0.28
SHKBP1-219ENST00000599575 GAB3Q8WWW8 586 aa16.8■□□□□ 0.28
SHKBP1-219ENST00000599575 SPOCK2Q92563 424 aa16.8■□□□□ 0.28
SHKBP1-219ENST00000599575 QKIQ96PU8 341 aaKnown RBP eCLIP16.8■□□□□ 0.28
SHKBP1-219ENST00000599575 LGMNQ99538 433 aa16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms