RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 NOCTQ9UK39 431 aaKnown RBP13.88□□□□□ -0.19
TRIM28-211ENST00000597968 HPCAL4Q9UM19 191 aa13.88□□□□□ -0.19
TRIM28-211ENST00000597968 CSNK1G3Q9Y6M4 447 aa13.88□□□□□ -0.19
TRIM28-211ENST00000597968 SMG1Q96Q15 3661 aaKnown RBP13.87□□□□□ -0.19
TRIM28-211ENST00000597968 TP53BP1Q12888 1972 aaPredicted RBP13.87□□□□□ -0.19
TRIM28-211ENST00000597968 ZFYVE26Q68DK2 2539 aa13.87□□□□□ -0.19
TRIM28-211ENST00000597968 H3BM21 787 aa13.87□□□□□ -0.19
TRIM28-211ENST00000597968 SIGLEC6O43699 453 aa13.87□□□□□ -0.19
TRIM28-211ENST00000597968 LZTS3O60299 673 aaPredicted RBP13.87□□□□□ -0.19
TRIM28-211ENST00000597968 GSRP00390 522 aa13.87□□□□□ -0.19
TRIM28-211ENST00000597968 MMEP08473 750 aa13.87□□□□□ -0.19
TRIM28-211ENST00000597968 EIF2S3P41091 472 aaKnown RBP13.87□□□□□ -0.19
TRIM28-211ENST00000597968 RABIFP47224 123 aa13.87□□□□□ -0.19
TRIM28-211ENST00000597968 CCNHP51946 323 aaPredicted RBP13.87□□□□□ -0.19
TRIM28-211ENST00000597968 AIF1P55008 147 aa13.87□□□□□ -0.19
TRIM28-211ENST00000597968 SNRPD1P62314 119 aaKnown RBP13.87□□□□□ -0.19
TRIM28-211ENST00000597968 ARF5P84085 180 aa13.87□□□□□ -0.19
TRIM28-211ENST00000597968 POLD3Q15054 466 aaPredicted RBP13.87□□□□□ -0.19
TRIM28-211ENST00000597968 POM121L1PQ3SYA9 428 aa13.87□□□□□ -0.19
TRIM28-211ENST00000597968 TAF3Q5VWG9 929 aa13.87□□□□□ -0.19
TRIM28-211ENST00000597968 C19orf48Q6RUI8 117 aa13.87□□□□□ -0.19
TRIM28-211ENST00000597968 LRRC69Q6ZNQ3 347 aa13.87□□□□□ -0.19
TRIM28-211ENST00000597968 CLEC17AQ6ZS10 378 aa13.87□□□□□ -0.19
TRIM28-211ENST00000597968 NLRP14Q86W24 1093 aa13.87□□□□□ -0.19
TRIM28-211ENST00000597968 LSMEM2Q8N112 164 aa13.87□□□□□ -0.19
TRIM28-211ENST00000597968 CHST14Q8NCH0 376 aa13.87□□□□□ -0.19
TRIM28-211ENST00000597968 LSM14AQ8ND56 463 aaKnown RBP13.87□□□□□ -0.19
TRIM28-211ENST00000597968 OR7D4Q8NG98 312 aa13.87□□□□□ -0.19
TRIM28-211ENST00000597968 HNRNPLLQ8WVV9 542 aaKnown RBP13.87□□□□□ -0.19
TRIM28-211ENST00000597968 CPA5Q8WXQ8 436 aa13.87□□□□□ -0.19
TRIM28-211ENST00000597968 CENPIQ92674 756 aaPredicted RBP13.87□□□□□ -0.19
TRIM28-211ENST00000597968 TBATAQ96M53 351 aa13.87□□□□□ -0.19
TRIM28-211ENST00000597968 SPON2Q9BUD6 331 aa13.87□□□□□ -0.19
TRIM28-211ENST00000597968 LMBRD1Q9NUN5 540 aa13.87□□□□□ -0.19
TRIM28-211ENST00000597968 ZFR2Q9UPR6 939 aaKnown RBP13.87□□□□□ -0.19
TRIM28-211ENST00000597968 FADS3Q9Y5Q0 445 aa13.87□□□□□ -0.19
TRIM28-211ENST00000597968 ACACAQ13085 2346 aa13.86□□□□□ -0.19
TRIM28-211ENST00000597968 SPTY2D1-AS1A0A0U1RR47 76 aa13.86□□□□□ -0.19
TRIM28-211ENST00000597968 FAM170AA1A519 330 aa13.86□□□□□ -0.19
TRIM28-211ENST00000597968 C2CD4BA6NLJ0 364 aa13.86□□□□□ -0.19
TRIM28-211ENST00000597968 GOLGA8SH3BPF8 625 aa13.86□□□□□ -0.19
TRIM28-211ENST00000597968 TK2O00142 265 aa13.86□□□□□ -0.19
TRIM28-211ENST00000597968 SCAMP1O15126 338 aa13.86□□□□□ -0.19
TRIM28-211ENST00000597968 PIAS2O75928 621 aa13.86□□□□□ -0.19
TRIM28-211ENST00000597968 POP4O95707 220 aaKnown RBP13.86□□□□□ -0.19
TRIM28-211ENST00000597968 GLDCP23378 1020 aa13.86□□□□□ -0.19
TRIM28-211ENST00000597968 ACTN2P35609 894 aa13.86□□□□□ -0.19
TRIM28-211ENST00000597968 SOX5P35711 763 aa13.86□□□□□ -0.19
TRIM28-211ENST00000597968 NUMBP49757 651 aa13.86□□□□□ -0.19
TRIM28-211ENST00000597968 SUOXP51687 545 aa13.86□□□□□ -0.19
TRIM28-211ENST00000597968 JAM2P57087 298 aa13.86□□□□□ -0.19
TRIM28-211ENST00000597968 DAB2P98082 770 aa13.86□□□□□ -0.19
TRIM28-211ENST00000597968 INSM1Q01101 510 aaPredicted RBP13.86□□□□□ -0.19
TRIM28-211ENST00000597968 INO80DQ53TQ3 878 aaPredicted RBP13.86□□□□□ -0.19
TRIM28-211ENST00000597968 FKBP15Q5T1M5 1219 aa13.86□□□□□ -0.19
TRIM28-211ENST00000597968 CDKAL1Q5VV42 579 aa13.86□□□□□ -0.19
TRIM28-211ENST00000597968 NAA35Q5VZE5 725 aa13.86□□□□□ -0.19
TRIM28-211ENST00000597968 TRNP1Q6NT89 227 aa13.86□□□□□ -0.19
TRIM28-211ENST00000597968 LINGO4Q6UY18 593 aa13.86□□□□□ -0.19
TRIM28-211ENST00000597968 GCNT7Q6ZNI0 430 aa13.86□□□□□ -0.19
TRIM28-211ENST00000597968 PARGQ86W56 976 aa13.86□□□□□ -0.19
TRIM28-211ENST00000597968 ANKRD20A12PQ8NF67 263 aa13.86□□□□□ -0.19
TRIM28-211ENST00000597968 OR13H1Q8NG92 308 aa13.86□□□□□ -0.19
TRIM28-211ENST00000597968 GRIN3AQ8TCU5 1115 aa13.86□□□□□ -0.19
TRIM28-211ENST00000597968 BTN2A2Q8WVV5 523 aa13.86□□□□□ -0.19
TRIM28-211ENST00000597968 ARHGEF2Q92974 986 aaKnown RBP13.86□□□□□ -0.19
TRIM28-211ENST00000597968 C1QTNF2Q9BXJ5 285 aa13.86□□□□□ -0.19
TRIM28-211ENST00000597968 CALN1Q9BXU9 219 aa13.86□□□□□ -0.19
TRIM28-211ENST00000597968 GANQ9H2C0 597 aa13.86□□□□□ -0.19
TRIM28-211ENST00000597968 TNKS2Q9H2K2 1166 aa13.86□□□□□ -0.19
TRIM28-211ENST00000597968 METTL5Q9NRN9 209 aaKnown RBP13.86□□□□□ -0.19
TRIM28-211ENST00000597968 SAMSN1Q9NSI8 373 aaKnown RBP13.86□□□□□ -0.19
TRIM28-211ENST00000597968 HECAQ9UBI9 543 aaPredicted RBP13.86□□□□□ -0.19
TRIM28-211ENST00000597968 AK5Q9Y6K8 562 aa13.86□□□□□ -0.19
TRIM28-211ENST00000597968 TRIM38O00635 465 aa13.85□□□□□ -0.19
TRIM28-211ENST00000597968 FPGTO14772 594 aa13.85□□□□□ -0.19
TRIM28-211ENST00000597968 TPP1O14773 563 aa13.85□□□□□ -0.19
TRIM28-211ENST00000597968 RAMP2O60895 175 aa13.85□□□□□ -0.19
TRIM28-211ENST00000597968 CSF2P04141 144 aa13.85□□□□□ -0.19
TRIM28-211ENST00000597968 CALB1P05937 261 aa13.85□□□□□ -0.19
TRIM28-211ENST00000597968 UNGP13051 313 aaPredicted RBP13.85□□□□□ -0.19
TRIM28-211ENST00000597968 NME1P15531 152 aaKnown RBP13.85□□□□□ -0.19
TRIM28-211ENST00000597968 PRLRP16471 622 aa13.85□□□□□ -0.19
TRIM28-211ENST00000597968 HTR7P34969 479 aa13.85□□□□□ -0.19
TRIM28-211ENST00000597968 ANP32AP39687 249 aaKnown RBP13.85□□□□□ -0.19
TRIM28-211ENST00000597968 STAT1P42224 750 aa13.85□□□□□ -0.19
TRIM28-211ENST00000597968 ATP11AP98196 1134 aa13.85□□□□□ -0.19
TRIM28-211ENST00000597968 FMO1Q01740 532 aa13.85□□□□□ -0.19
TRIM28-211ENST00000597968 RAD51Q06609 339 aa13.85□□□□□ -0.19
TRIM28-211ENST00000597968 SGCGQ13326 291 aa13.85□□□□□ -0.19
TRIM28-211ENST00000597968 COL9A2Q14055 689 aaPredicted RBP13.85□□□□□ -0.19
TRIM28-211ENST00000597968 PTK2BQ14289 1009 aa13.85□□□□□ -0.19
TRIM28-211ENST00000597968 CCDC14Q49A88 953 aa13.85□□□□□ -0.19
TRIM28-211ENST00000597968 SOWAHCQ53LP3 525 aaPredicted RBP13.85□□□□□ -0.19
TRIM28-211ENST00000597968 ZNF805Q5CZA5 627 aa13.85□□□□□ -0.19
TRIM28-211ENST00000597968 PPP1R2P3Q6NXS1 205 aa13.85□□□□□ -0.19
TRIM28-211ENST00000597968 Q6ZSR6 202 aa13.85□□□□□ -0.19
TRIM28-211ENST00000597968 SLC22A18ASQ8N1D0 253 aa13.85□□□□□ -0.19
TRIM28-211ENST00000597968 C3orf20Q8ND61 904 aa13.85□□□□□ -0.19
TRIM28-211ENST00000597968 OR2AP1Q8NGE2 309 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms