RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 PRCCQ92733 491 aaPredicted RBP15.49■□□□□ 0.07
TRIM28-209ENST00000597423 ISG20Q96AZ6 181 aaKnown RBP15.49■□□□□ 0.07
TRIM28-209ENST00000597423 ASIC4Q96FT7 647 aa15.49■□□□□ 0.07
TRIM28-209ENST00000597423 IMP4Q96G21 291 aaKnown RBP15.49■□□□□ 0.07
TRIM28-209ENST00000597423 PHACTR1Q9C0D0 580 aa15.49■□□□□ 0.07
TRIM28-209ENST00000597423 HPS4Q9NQG7 708 aa15.49■□□□□ 0.07
TRIM28-209ENST00000597423 FAM153AQ9UHL3 310 aa15.49■□□□□ 0.07
TRIM28-209ENST00000597423 PLA2G4CQ9UP65 541 aa15.49■□□□□ 0.07
TRIM28-209ENST00000597423 HELZP42694 1942 aaKnown RBP15.49■□□□□ 0.07
TRIM28-209ENST00000597423 NUP210Q8TEM1 1887 aaPredicted RBP15.48■□□□□ 0.07
TRIM28-209ENST00000597423 C2orf16Q68DN1 1984 aa15.48■□□□□ 0.07
TRIM28-209ENST00000597423 DOCK4Q8N1I0 1966 aa15.48■□□□□ 0.07
TRIM28-209ENST00000597423 LAMA3Q16787 3333 aa15.48■□□□□ 0.07
TRIM28-209ENST00000597423 SRPRAP08240 638 aaKnown RBP15.48■□□□□ 0.07
TRIM28-209ENST00000597423 SERPINF2P08697 491 aa15.48■□□□□ 0.07
TRIM28-209ENST00000597423 CA4P22748 312 aa15.48■□□□□ 0.07
TRIM28-209ENST00000597423 SERPINH1P50454 418 aaKnown RBP15.48■□□□□ 0.07
TRIM28-209ENST00000597423 VASPP50552 380 aaPredicted RBP15.48■□□□□ 0.07
TRIM28-209ENST00000597423 RHOAP61586 193 aa15.48■□□□□ 0.07
TRIM28-209ENST00000597423 ST8SIA6P61647 398 aa15.48■□□□□ 0.07
TRIM28-209ENST00000597423 DHX9Q08211 1270 aaKnown RBP15.48■□□□□ 0.07
TRIM28-209ENST00000597423 EIF4HQ15056 248 aaKnown RBP15.48■□□□□ 0.07
TRIM28-209ENST00000597423 SLC14A2Q15849 920 aa15.48■□□□□ 0.07
TRIM28-209ENST00000597423 HIF1AQ16665 826 aa15.48■□□□□ 0.07
TRIM28-209ENST00000597423 PTCRAQ6ISU1 281 aaPredicted RBP15.48■□□□□ 0.07
TRIM28-209ENST00000597423 LINGO4Q6UY18 593 aa15.48■□□□□ 0.07
TRIM28-209ENST00000597423 CCDC25Q86WR0 208 aa15.48■□□□□ 0.07
TRIM28-209ENST00000597423 SUGP1Q8IWZ8 645 aaKnown RBP15.48■□□□□ 0.07
TRIM28-209ENST00000597423 ETFBKMTQ8IXQ9 262 aa15.48■□□□□ 0.07
TRIM28-209ENST00000597423 ANKRD7Q92527 254 aa15.48■□□□□ 0.07
TRIM28-209ENST00000597423 SEMA3CQ99985 751 aa15.48■□□□□ 0.07
TRIM28-209ENST00000597423 MGME1Q9BQP7 344 aa15.48■□□□□ 0.07
TRIM28-209ENST00000597423 CEP44Q9C0F1 390 aa15.48■□□□□ 0.07
TRIM28-209ENST00000597423 SCUBE2Q9NQ36 999 aa15.48■□□□□ 0.07
TRIM28-209ENST00000597423 TRPV5Q9NQA5 729 aa15.48■□□□□ 0.07
TRIM28-209ENST00000597423 LIMD1Q9UGP4 676 aa15.48■□□□□ 0.07
TRIM28-209ENST00000597423 HS3ST2Q9Y278 367 aa15.48■□□□□ 0.07
TRIM28-209ENST00000597423 C2CD4DB7Z1M9 353 aa15.47■□□□□ 0.07
TRIM28-209ENST00000597423 TMCC1O94876 653 aa15.47■□□□□ 0.07
TRIM28-209ENST00000597423 SUN1O94901 812 aa15.47■□□□□ 0.07
TRIM28-209ENST00000597423 SP100P23497 879 aaPredicted RBP15.47■□□□□ 0.07
TRIM28-209ENST00000597423 ECHS1P30084 290 aa15.47■□□□□ 0.07
TRIM28-209ENST00000597423 GJA4P35212 333 aa15.47■□□□□ 0.07
TRIM28-209ENST00000597423 CSNK1DP48730 415 aa15.47■□□□□ 0.07
TRIM28-209ENST00000597423 PFKPQ01813 784 aa15.47■□□□□ 0.07
TRIM28-209ENST00000597423 RAD51Q06609 339 aa15.47■□□□□ 0.07
TRIM28-209ENST00000597423 KCTD19Q17RG1 926 aaPredicted RBP15.47■□□□□ 0.07
TRIM28-209ENST00000597423 FUT11Q495W5 492 aa15.47■□□□□ 0.07
TRIM28-209ENST00000597423 ACCSLQ4AC99 568 aa15.47■□□□□ 0.07
TRIM28-209ENST00000597423 ASTLQ6HA08 431 aaPredicted RBP15.47■□□□□ 0.07
TRIM28-209ENST00000597423 LRRC8BQ6P9F7 803 aa15.47■□□□□ 0.07
TRIM28-209ENST00000597423 FBXO38Q6PIJ6 1188 aa15.47■□□□□ 0.07
TRIM28-209ENST00000597423 HDXQ7Z353 690 aa15.47■□□□□ 0.07
TRIM28-209ENST00000597423 ADIPOR2Q86V24 386 aa15.47■□□□□ 0.07
TRIM28-209ENST00000597423 ST13P5Q8NFI4 369 aaPredicted RBP15.47■□□□□ 0.07
TRIM28-209ENST00000597423 LRRC39Q96DD0 335 aa15.47■□□□□ 0.07
TRIM28-209ENST00000597423 NUDCD1Q96RS6 583 aa15.47■□□□□ 0.07
TRIM28-209ENST00000597423 RBM15Q96T37 977 aaKnown RBP eCLIP15.47■□□□□ 0.078e-8■■□□□ 14
TRIM28-209ENST00000597423 RPP25Q9BUL9 199 aaKnown RBP15.47■□□□□ 0.07
TRIM28-209ENST00000597423 FSD1LQ9BXM9 530 aa15.47■□□□□ 0.07
TRIM28-209ENST00000597423 CIPCQ9C0C6 399 aa15.47■□□□□ 0.07
TRIM28-209ENST00000597423 INTS6Q9UL03 887 aaKnown RBP15.47■□□□□ 0.07
TRIM28-209ENST00000597423 ARIH1Q9Y4X5 557 aaPredicted RBP15.47■□□□□ 0.07
TRIM28-209ENST00000597423 TBC1D3BA6NDS4 549 aa15.46■□□□□ 0.07
TRIM28-209ENST00000597423 GOLGA8MH3BSY2 632 aa15.46■□□□□ 0.07
TRIM28-209ENST00000597423 TP73O15350 636 aa15.46■□□□□ 0.07
TRIM28-209ENST00000597423 INSIG1O15503 277 aa15.46■□□□□ 0.07
TRIM28-209ENST00000597423 EPOP01588 193 aa15.46■□□□□ 0.07
TRIM28-209ENST00000597423 APODP05090 189 aa15.46■□□□□ 0.07
TRIM28-209ENST00000597423 DLDP09622 509 aaKnown RBP15.46■□□□□ 0.07
TRIM28-209ENST00000597423 MYBL2P10244 700 aa15.46■□□□□ 0.07
TRIM28-209ENST00000597423 CD86P42081 329 aa15.46■□□□□ 0.07
TRIM28-209ENST00000597423 GRIA2P42262 883 aa15.46■□□□□ 0.07
TRIM28-209ENST00000597423 RECQLP46063 649 aaPredicted RBP15.46■□□□□ 0.07
TRIM28-209ENST00000597423 SLC6A11P48066 632 aa15.46■□□□□ 0.07
TRIM28-209ENST00000597423 NPY2RP49146 381 aa15.46■□□□□ 0.07
TRIM28-209ENST00000597423 SCNN1BP51168 640 aa15.46■□□□□ 0.07
TRIM28-209ENST00000597423 MAXP61244 160 aa15.46■□□□□ 0.07
TRIM28-209ENST00000597423 SNRPD1P62314 119 aaKnown RBP15.46■□□□□ 0.07
TRIM28-209ENST00000597423 CBLBQ13191 982 aa15.46■□□□□ 0.07
TRIM28-209ENST00000597423 AAK1Q2M2I8 961 aa15.46■□□□□ 0.07
TRIM28-209ENST00000597423 SPDYCQ5MJ68 293 aa15.46■□□□□ 0.07
TRIM28-209ENST00000597423 BEND6Q5SZJ8 279 aaPredicted RBP15.46■□□□□ 0.07
TRIM28-209ENST00000597423 ANKRD22Q5VYY1 191 aa15.46■□□□□ 0.07
TRIM28-209ENST00000597423 ALG1LQ6GMV1 187 aa15.46■□□□□ 0.07
TRIM28-209ENST00000597423 TRMT10CQ7L0Y3 403 aaKnown RBP15.46■□□□□ 0.07
TRIM28-209ENST00000597423 RELL1Q8IUW5 271 aa15.46■□□□□ 0.07
TRIM28-209ENST00000597423 KLHDC8BQ8IXV7 354 aa15.46■□□□□ 0.07
TRIM28-209ENST00000597423 PLPP6Q8IY26 295 aa15.46■□□□□ 0.07
TRIM28-209ENST00000597423 GSPT2Q8IYD1 628 aaKnown RBP15.46■□□□□ 0.07
TRIM28-209ENST00000597423 SLC44A3Q8N4M1 653 aa15.46■□□□□ 0.07
TRIM28-209ENST00000597423 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP15.46■□□□□ 0.07
TRIM28-209ENST00000597423 PCDH20Q8N6Y1 951 aaKnown RBP15.46■□□□□ 0.07
TRIM28-209ENST00000597423 DNAAF3Q8N9W5 541 aa15.46■□□□□ 0.07
TRIM28-209ENST00000597423 KDM1BQ8NB78 822 aa15.46■□□□□ 0.07
TRIM28-209ENST00000597423 TSEN2Q8NCE0 465 aaKnown RBP15.46■□□□□ 0.07
TRIM28-209ENST00000597423 IFT43Q96FT9 208 aa15.46■□□□□ 0.07
TRIM28-209ENST00000597423 TTC25Q96NG3 672 aa15.46■□□□□ 0.07
TRIM28-209ENST00000597423 NEUROG2Q9H2A3 272 aa15.46■□□□□ 0.07
TRIM28-209ENST00000597423 C8orf33Q9H7E9 229 aaPredicted RBP15.46■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms