RNA–Protein interactions for RNA: ENST00000597325.1

SHKBP1-213, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 366 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-213ENST00000597325 ETNK2Q9NVF9 386 aa12.32□□□□□ -0.44
SHKBP1-213ENST00000597325 GTSE1Q9NYZ3 720 aa12.32□□□□□ -0.44
SHKBP1-213ENST00000597325 EBF1Q9UH73 591 aa12.32□□□□□ -0.44
SHKBP1-213ENST00000597325 PI4KAP42356 2102 aa12.31□□□□□ -0.44
SHKBP1-213ENST00000597325 PTPRBP23467 1997 aa12.31□□□□□ -0.44
SHKBP1-213ENST00000597325 ARHGAP42A6NI28 874 aa12.31□□□□□ -0.44
SHKBP1-213ENST00000597325 H7C0C1 242 aa12.31□□□□□ -0.44
SHKBP1-213ENST00000597325 DFFAO00273 331 aa12.31□□□□□ -0.44
SHKBP1-213ENST00000597325 GFRA2O00451 464 aa12.31□□□□□ -0.44
SHKBP1-213ENST00000597325 RAMP2O60895 175 aa12.31□□□□□ -0.44
SHKBP1-213ENST00000597325 PHF2O75151 1096 aa12.31□□□□□ -0.44
SHKBP1-213ENST00000597325 ZNF189O75820 626 aaPredicted RBP12.31□□□□□ -0.44
SHKBP1-213ENST00000597325 CYP17A1P05093 508 aa12.31□□□□□ -0.44
SHKBP1-213ENST00000597325 ADH5P11766 374 aa12.31□□□□□ -0.44
SHKBP1-213ENST00000597325 HOXD9P28356 352 aaPredicted RBP12.31□□□□□ -0.44
SHKBP1-213ENST00000597325 ETFBP38117 255 aa12.31□□□□□ -0.44
SHKBP1-213ENST00000597325 ATP5OP48047 213 aa12.31□□□□□ -0.44
SHKBP1-213ENST00000597325 NDST2P52849 883 aa12.31□□□□□ -0.44
SHKBP1-213ENST00000597325 OXCT1P55809 520 aa12.31□□□□□ -0.44
SHKBP1-213ENST00000597325 EIF3EP60228 445 aaKnown RBP12.31□□□□□ -0.44
SHKBP1-213ENST00000597325 GAD2Q05329 585 aa12.31□□□□□ -0.44
SHKBP1-213ENST00000597325 C2orf54Q08AI8 447 aa12.31□□□□□ -0.44
SHKBP1-213ENST00000597325 LMAN2Q12907 356 aa12.31□□□□□ -0.44
SHKBP1-213ENST00000597325 NR1H3Q13133 447 aa12.31□□□□□ -0.44
SHKBP1-213ENST00000597325 SNX1Q13596 522 aa12.31□□□□□ -0.44
SHKBP1-213ENST00000597325 PDK1Q15118 436 aa12.31□□□□□ -0.44
SHKBP1-213ENST00000597325 CCNG2Q16589 344 aa12.31□□□□□ -0.44
SHKBP1-213ENST00000597325 EML3Q32P44 896 aa12.31□□□□□ -0.44
SHKBP1-213ENST00000597325 PARP15Q460N3 678 aa12.31□□□□□ -0.44
SHKBP1-213ENST00000597325 LY6G5CQ5SRR4 150 aa12.31□□□□□ -0.44
SHKBP1-213ENST00000597325 TRIM68Q6AZZ1 485 aa12.31□□□□□ -0.44
SHKBP1-213ENST00000597325 NPNTQ6UXI9 565 aa12.31□□□□□ -0.44
SHKBP1-213ENST00000597325 ZNF783Q6ZMS7 281 aa12.31□□□□□ -0.44
SHKBP1-213ENST00000597325 KLHL7Q8IXQ5 586 aa12.31□□□□□ -0.44
SHKBP1-213ENST00000597325 UMODL1-AS1Q8N2C9 162 aa12.31□□□□□ -0.44
SHKBP1-213ENST00000597325 ATPAF2Q8N5M1 289 aa12.31□□□□□ -0.44
SHKBP1-213ENST00000597325 NPWQ8N729 165 aa12.31□□□□□ -0.44
SHKBP1-213ENST00000597325 SPATA4Q8NEY3 305 aa12.31□□□□□ -0.44
SHKBP1-213ENST00000597325 C1orf54Q8WWF1 131 aa12.31□□□□□ -0.44
SHKBP1-213ENST00000597325 ATG4AQ8WYN0 398 aa12.31□□□□□ -0.44
SHKBP1-213ENST00000597325 MAGOHBQ96A72 148 aaKnown RBP12.31□□□□□ -0.44
SHKBP1-213ENST00000597325 CELF6Q96J87 481 aaKnown RBP12.31□□□□□ -0.44
SHKBP1-213ENST00000597325 ZFYVE19Q96K21 471 aa12.31□□□□□ -0.44
SHKBP1-213ENST00000597325 CCDC114Q96M63 670 aa12.31□□□□□ -0.44
SHKBP1-213ENST00000597325 RUNDC3BQ96NL0 473 aa12.31□□□□□ -0.44
SHKBP1-213ENST00000597325 HHIPQ96QV1 700 aa12.31□□□□□ -0.44
SHKBP1-213ENST00000597325 CARD6Q9BX69 1037 aa12.31□□□□□ -0.44
SHKBP1-213ENST00000597325 LINC00597Q9H2U6 94 aa12.31□□□□□ -0.44
SHKBP1-213ENST00000597325 EBF3Q9H4W6 596 aa12.31□□□□□ -0.44
SHKBP1-213ENST00000597325 DTLQ9NZJ0 730 aa12.31□□□□□ -0.44
SHKBP1-213ENST00000597325 MARK1Q9P0L2 795 aa12.31□□□□□ -0.44
SHKBP1-213ENST00000597325 SAE1Q9UBE0 346 aaPredicted RBP12.31□□□□□ -0.44
SHKBP1-213ENST00000597325 R3HDM2Q9Y2K5 976 aaKnown RBP12.31□□□□□ -0.44
SHKBP1-213ENST00000597325 MFHAS1Q9Y4C4 1052 aa12.31□□□□□ -0.44
SHKBP1-213ENST00000597325 TNRC6BQ9UPQ9 1833 aaKnown RBP12.3□□□□□ -0.44
SHKBP1-213ENST00000597325 HACD1B0YJ81 288 aa12.3□□□□□ -0.44
SHKBP1-213ENST00000597325 LIASO43766 372 aa12.3□□□□□ -0.44
SHKBP1-213ENST00000597325 ATG13O75143 517 aa12.3□□□□□ -0.44
SHKBP1-213ENST00000597325 MAP3K6O95382 1288 aa12.3□□□□□ -0.44
SHKBP1-213ENST00000597325 PENKP01210 267 aaPredicted RBP12.3□□□□□ -0.44
SHKBP1-213ENST00000597325 TYRP14679 529 aa12.3□□□□□ -0.44
SHKBP1-213ENST00000597325 ARSAP15289 507 aa12.3□□□□□ -0.44
SHKBP1-213ENST00000597325 CHRNA3P32297 505 aa12.3□□□□□ -0.44
SHKBP1-213ENST00000597325 FNTAP49354 379 aa12.3□□□□□ -0.44
SHKBP1-213ENST00000597325 YBEYP58557 167 aaPredicted RBP12.3□□□□□ -0.44
SHKBP1-213ENST00000597325 GNA12Q03113 381 aa12.3□□□□□ -0.44
SHKBP1-213ENST00000597325 XRCC4Q13426 336 aa12.3□□□□□ -0.44
SHKBP1-213ENST00000597325 BYSLQ13895 437 aaKnown RBP12.3□□□□□ -0.44
SHKBP1-213ENST00000597325 POLD3Q15054 466 aaPredicted RBP12.3□□□□□ -0.44
SHKBP1-213ENST00000597325 DHCR24Q15392 516 aa12.3□□□□□ -0.44
SHKBP1-213ENST00000597325 SIX1Q15475 284 aaPredicted RBP12.3□□□□□ -0.44
SHKBP1-213ENST00000597325 FYB2Q5VWT5 728 aa12.3□□□□□ -0.44
SHKBP1-213ENST00000597325 DARS2Q6PI48 645 aaKnown RBP12.3□□□□□ -0.44
SHKBP1-213ENST00000597325 CYP2U1Q7Z449 544 aa12.3□□□□□ -0.44
SHKBP1-213ENST00000597325 ZC3H18Q86VM9 953 aaKnown RBP12.3□□□□□ -0.44
SHKBP1-213ENST00000597325 TMEM25Q86YD3 366 aa12.3□□□□□ -0.44
SHKBP1-213ENST00000597325 PRELID2Q8N945 189 aa12.3□□□□□ -0.44
SHKBP1-213ENST00000597325 CCNYQ8ND76 341 aa12.3□□□□□ -0.44
SHKBP1-213ENST00000597325 TTC8Q8TAM2 541 aa12.3□□□□□ -0.44
SHKBP1-213ENST00000597325 GRK7Q8WTQ7 553 aa12.3□□□□□ -0.44
SHKBP1-213ENST00000597325 TFB1MQ8WVM0 346 aaKnown RBP12.3□□□□□ -0.44
SHKBP1-213ENST00000597325 XPO6Q96QU8 1125 aaKnown RBP12.3□□□□□ -0.44
SHKBP1-213ENST00000597325 FAM118BQ9BPY3 351 aa12.3□□□□□ -0.44
SHKBP1-213ENST00000597325 BRD8Q9H0E9 1235 aa12.3□□□□□ -0.44
SHKBP1-213ENST00000597325 MUC3BQ9H195 1237 aa12.3□□□□□ -0.44
SHKBP1-213ENST00000597325 MAGEH1Q9H213 219 aa12.3□□□□□ -0.44
SHKBP1-213ENST00000597325 PLK2Q9NYY3 685 aa12.3□□□□□ -0.44
SHKBP1-213ENST00000597325 UBR5O95071 2799 aaPredicted RBP12.29□□□□□ -0.44
SHKBP1-213ENST00000597325 ILVBLA1L0T0 632 aa12.29□□□□□ -0.44
SHKBP1-213ENST00000597325 RASA4BC9J798 803 aa12.29□□□□□ -0.44
SHKBP1-213ENST00000597325 HOXC11O43248 304 aaPredicted RBP12.29□□□□□ -0.44
SHKBP1-213ENST00000597325 RASA4O43374 803 aa12.29□□□□□ -0.44
SHKBP1-213ENST00000597325 STK10O94804 968 aaKnown RBP12.29□□□□□ -0.44
SHKBP1-213ENST00000597325 SLU7O95391 586 aaKnown RBP12.29□□□□□ -0.44
SHKBP1-213ENST00000597325 RBP3P10745 1247 aa12.29□□□□□ -0.44
SHKBP1-213ENST00000597325 ENGP17813 658 aa12.29□□□□□ -0.44
SHKBP1-213ENST00000597325 MAPK8P45983 427 aa12.29□□□□□ -0.44
SHKBP1-213ENST00000597325 GALNT2Q10471 571 aa12.29□□□□□ -0.44
SHKBP1-213ENST00000597325 RUNX3Q13761 415 aa12.29□□□□□ -0.44
SHKBP1-213ENST00000597325 CYP1B1Q16678 543 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms