RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 RAPGEF5Q92565 580 aa11.29□□□□□ -0.6
LIG1-211ENST00000596457 PIGKQ92643 395 aa11.29□□□□□ -0.6
LIG1-211ENST00000596457 MAK16Q9BXY0 300 aaKnown RBP11.29□□□□□ -0.6
LIG1-211ENST00000596457 LACRTQ9GZZ8 138 aa11.29□□□□□ -0.6
LIG1-211ENST00000596457 BTBD1Q9H0C5 482 aa11.29□□□□□ -0.6
LIG1-211ENST00000596457 NEUROG2Q9H2A3 272 aa11.29□□□□□ -0.6
LIG1-211ENST00000596457 SMOC1Q9H4F8 434 aa11.29□□□□□ -0.6
LIG1-211ENST00000596457 ZDHHC6Q9H6R6 413 aa11.29□□□□□ -0.6
LIG1-211ENST00000596457 LRRC19Q9H756 370 aa11.29□□□□□ -0.6
LIG1-211ENST00000596457 DLL3Q9NYJ7 618 aa11.29□□□□□ -0.6
LIG1-211ENST00000596457 UBA2Q9UBT2 640 aaPredicted RBP11.29□□□□□ -0.6
LIG1-211ENST00000596457 IL36AQ9UHA7 158 aa11.29□□□□□ -0.6
LIG1-211ENST00000596457 SALL4Q9UJQ4 1053 aa11.29□□□□□ -0.6
LIG1-211ENST00000596457 SARDHQ9UL12 918 aa11.29□□□□□ -0.6
LIG1-211ENST00000596457 FRYLO94915 3013 aa11.29□□□□□ -0.6
LIG1-211ENST00000596457 ABCA7Q8IZY2 2146 aa11.29□□□□□ -0.6
LIG1-211ENST00000596457 SPAG17Q6Q759 2223 aa11.28□□□□□ -0.6
LIG1-211ENST00000596457 A0A0A6YYK5 440 aaPredicted RBP11.28□□□□□ -0.6
LIG1-211ENST00000596457 A0A0U1RQJ8 604 aa11.28□□□□□ -0.6
LIG1-211ENST00000596457 MACROD2A1Z1Q3 448 aa11.28□□□□□ -0.6
LIG1-211ENST00000596457 KRIT1O00522 736 aa11.28□□□□□ -0.6
LIG1-211ENST00000596457 MCF2LO15068 1137 aa11.28□□□□□ -0.6
LIG1-211ENST00000596457 ZNF821O75541 412 aaPredicted RBP11.28□□□□□ -0.6
LIG1-211ENST00000596457 LEFTY1O75610 366 aa11.28□□□□□ -0.6
LIG1-211ENST00000596457 TMCC1O94876 653 aa11.28□□□□□ -0.6
LIG1-211ENST00000596457 EPN2O95208 641 aa11.28□□□□□ -0.6
LIG1-211ENST00000596457 MAP3K6O95382 1288 aa11.28□□□□□ -0.6
LIG1-211ENST00000596457 CTSLP07711 333 aa11.28□□□□□ -0.6
LIG1-211ENST00000596457 C5AR1P21730 350 aa11.28□□□□□ -0.6
LIG1-211ENST00000596457 TGM1P22735 817 aa11.28□□□□□ -0.6
LIG1-211ENST00000596457 IL4RP24394 825 aa11.28□□□□□ -0.6
LIG1-211ENST00000596457 MAOBP27338 520 aa11.28□□□□□ -0.6
LIG1-211ENST00000596457 GKP32189 559 aa11.28□□□□□ -0.6
LIG1-211ENST00000596457 PTGER3P43115 390 aa11.28□□□□□ -0.6
LIG1-211ENST00000596457 ARSEP51690 589 aa11.28□□□□□ -0.6
LIG1-211ENST00000596457 CCNHP51946 323 aaPredicted RBP11.28□□□□□ -0.6
LIG1-211ENST00000596457 RHOAP61586 193 aa11.28□□□□□ -0.6
LIG1-211ENST00000596457 SNRPD1P62314 119 aaKnown RBP11.28□□□□□ -0.6
LIG1-211ENST00000596457 ZBTB16Q05516 673 aa11.28□□□□□ -0.6
LIG1-211ENST00000596457 ZNF33AQ06730 810 aa11.28□□□□□ -0.6
LIG1-211ENST00000596457 SFSWAPQ12872 951 aaKnown RBP11.28□□□□□ -0.6
LIG1-211ENST00000596457 TCEAL1Q15170 157 aa11.28□□□□□ -0.6
LIG1-211ENST00000596457 LLGL1Q15334 1064 aa11.28□□□□□ -0.6
LIG1-211ENST00000596457 CYTH1Q15438 398 aa11.28□□□□□ -0.6
LIG1-211ENST00000596457 CSRP2Q16527 193 aa11.28□□□□□ -0.6
LIG1-211ENST00000596457 DCAF12L1Q5VU92 463 aa11.28□□□□□ -0.6
LIG1-211ENST00000596457 FAM46CQ5VWP2 391 aa11.28□□□□□ -0.6
LIG1-211ENST00000596457 LYSMD4Q5XG99 296 aa11.28□□□□□ -0.6
LIG1-211ENST00000596457 RFX6Q8HWS3 928 aa11.28□□□□□ -0.6
LIG1-211ENST00000596457 AADATQ8N5Z0 425 aa11.28□□□□□ -0.6
LIG1-211ENST00000596457 OR14C36Q8NHC7 312 aa11.28□□□□□ -0.6
LIG1-211ENST00000596457 TPCN2Q8NHX9 752 aa11.28□□□□□ -0.6
LIG1-211ENST00000596457 PCDH19Q8TAB3 1148 aa11.28□□□□□ -0.6
LIG1-211ENST00000596457 TRAF3IP1Q8TDR0 691 aaPredicted RBP11.28□□□□□ -0.6
LIG1-211ENST00000596457 TSC1Q92574 1164 aa11.28□□□□□ -0.6
LIG1-211ENST00000596457 EXOC2Q96KP1 924 aa11.28□□□□□ -0.6
LIG1-211ENST00000596457 HSPA12BQ96MM6 686 aa11.28□□□□□ -0.6
LIG1-211ENST00000596457 HEPHQ9BQS7 1158 aa11.28□□□□□ -0.6
LIG1-211ENST00000596457 CEP44Q9C0F1 390 aa11.28□□□□□ -0.6
LIG1-211ENST00000596457 MIR1-1HGQ9H1L0 117 aa11.28□□□□□ -0.6
LIG1-211ENST00000596457 C6orf106Q9H6K1 298 aaPredicted RBP11.28□□□□□ -0.6
LIG1-211ENST00000596457 DYRK4Q9NR20 520 aa11.28□□□□□ -0.6
LIG1-211ENST00000596457 DDX56Q9NY93 547 aaKnown RBP11.28□□□□□ -0.6
LIG1-211ENST00000596457 HECAQ9UBI9 543 aaPredicted RBP11.28□□□□□ -0.6
LIG1-211ENST00000596457 TRIM10Q9UDY6 481 aa11.28□□□□□ -0.6
LIG1-211ENST00000596457 SERGEFQ9UGK8 458 aa11.28□□□□□ -0.6
LIG1-211ENST00000596457 EVLQ9UI08 416 aaPredicted RBP11.28□□□□□ -0.6
LIG1-211ENST00000596457 SCML1Q9UN30 329 aa11.28□□□□□ -0.6
LIG1-211ENST00000596457 PCDHGA5Q9Y5G8 931 aa11.28□□□□□ -0.6
LIG1-211ENST00000596457 GPR179Q6PRD1 2367 aa11.28□□□□□ -0.6
LIG1-211ENST00000596457 CEP250Q9BV73 2442 aa11.28□□□□□ -0.6
LIG1-211ENST00000596457 TNRC6BQ9UPQ9 1833 aaKnown RBP11.28□□□□□ -0.6
LIG1-211ENST00000596457 TBC1D3DA0A087WVF3 549 aa11.27□□□□□ -0.61
LIG1-211ENST00000596457 TBC1D3IA0A087WXS9 549 aa11.27□□□□□ -0.61
LIG1-211ENST00000596457 TBC1D3EA0A087X179 549 aa11.27□□□□□ -0.61
LIG1-211ENST00000596457 TBC1D3KA0A087X1G2 549 aa11.27□□□□□ -0.61
LIG1-211ENST00000596457 TBC1D3FA6NER0 549 aaPredicted RBP11.27□□□□□ -0.61
LIG1-211ENST00000596457 TBC1D3LB9A6J9 549 aa11.27□□□□□ -0.61
LIG1-211ENST00000596457 RNF103O00237 685 aa11.27□□□□□ -0.61
LIG1-211ENST00000596457 ALOX15BO15296 676 aa11.27□□□□□ -0.61
LIG1-211ENST00000596457 PRAMEF11O60813 436 aa11.27□□□□□ -0.61
LIG1-211ENST00000596457 PALMO75781 387 aa11.27□□□□□ -0.61
LIG1-211ENST00000596457 FSBPO95073 299 aa11.27□□□□□ -0.61
LIG1-211ENST00000596457 SEMA4FO95754 770 aa11.27□□□□□ -0.61
LIG1-211ENST00000596457 IGSF6O95976 241 aa11.27□□□□□ -0.61
LIG1-211ENST00000596457 PRNPP04156 253 aa11.27□□□□□ -0.61
LIG1-211ENST00000596457 TBC1D3HP0C7X1 549 aa11.27□□□□□ -0.61
LIG1-211ENST00000596457 ITPKAP23677 461 aa11.27□□□□□ -0.61
LIG1-211ENST00000596457 SERPINB6P35237 376 aa11.27□□□□□ -0.61
LIG1-211ENST00000596457 MPLP40238 635 aa11.27□□□□□ -0.61
LIG1-211ENST00000596457 HADHBP55084 474 aaKnown RBP11.27□□□□□ -0.61
LIG1-211ENST00000596457 IL10RBQ08334 325 aa11.27□□□□□ -0.61
LIG1-211ENST00000596457 KIF5AQ12840 1032 aa11.27□□□□□ -0.61
LIG1-211ENST00000596457 CNTN1Q12860 1018 aa11.27□□□□□ -0.61
LIG1-211ENST00000596457 AFMIDQ63HM1 303 aa11.27□□□□□ -0.61
LIG1-211ENST00000596457 KAZNQ674X7 775 aa11.27□□□□□ -0.61
LIG1-211ENST00000596457 NCBP2-AS2Q69YL0 99 aa11.27□□□□□ -0.61
LIG1-211ENST00000596457 TBC1D3GQ6DHY5 549 aa11.27□□□□□ -0.61
LIG1-211ENST00000596457 TBC1D3CQ6IPX1 549 aa11.27□□□□□ -0.61
LIG1-211ENST00000596457 SLC41A1Q8IVJ1 513 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms