RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 SLC25A13Q9UJS0 675 aa10.75□□□□□ -0.69
LIG1-210ENST00000596332 FBXO4Q9UKT5 387 aa10.75□□□□□ -0.69
LIG1-210ENST00000596332 ATP8A1Q9Y2Q0 1164 aa10.75□□□□□ -0.69
LIG1-210ENST00000596332 TCRBV21S2A2A0A5A6 115 aa10.74□□□□□ -0.69
LIG1-210ENST00000596332 GOLGA6L9A6NEM1 432 aa10.74□□□□□ -0.69
LIG1-210ENST00000596332 KCNK1O00180 336 aa10.74□□□□□ -0.69
LIG1-210ENST00000596332 ZNF185O15231 689 aa10.74□□□□□ -0.69
LIG1-210ENST00000596332 HRO43593 1189 aa10.74□□□□□ -0.69
LIG1-210ENST00000596332 LILRB5O75023 590 aa10.74□□□□□ -0.69
LIG1-210ENST00000596332 GSRP00390 522 aa10.74□□□□□ -0.69
LIG1-210ENST00000596332 MMP2P08253 660 aa10.74□□□□□ -0.69
LIG1-210ENST00000596332 PRLRP16471 622 aa10.74□□□□□ -0.69
LIG1-210ENST00000596332 CD68P34810 354 aaPredicted RBP10.74□□□□□ -0.69
LIG1-210ENST00000596332 CSNK1DP48730 415 aa10.74□□□□□ -0.69
LIG1-210ENST00000596332 FNTBP49356 437 aa10.74□□□□□ -0.69
LIG1-210ENST00000596332 ST8SIA6P61647 398 aa10.74□□□□□ -0.69
LIG1-210ENST00000596332 IFI35P80217 286 aaPredicted RBP10.74□□□□□ -0.69
LIG1-210ENST00000596332 CSTF1Q05048 431 aaKnown RBP10.74□□□□□ -0.69
LIG1-210ENST00000596332 ZNF33AQ06730 810 aa10.74□□□□□ -0.69
LIG1-210ENST00000596332 NSUN2Q08J23 767 aaKnown RBP eCLIP10.74□□□□□ -0.69
LIG1-210ENST00000596332 NIPAL4Q0D2K0 466 aa10.74□□□□□ -0.69
LIG1-210ENST00000596332 HNRNPDQ14103 355 aaKnown RBP10.74□□□□□ -0.69
LIG1-210ENST00000596332 MYLK3Q32MK0 819 aa10.74□□□□□ -0.69
LIG1-210ENST00000596332 MAP7D1Q3KQU3 841 aa10.74□□□□□ -0.69
LIG1-210ENST00000596332 ZNF528Q3MIS6 628 aa10.74□□□□□ -0.69
LIG1-210ENST00000596332 ZSWIM9Q86XI8 627 aa10.74□□□□□ -0.69
LIG1-210ENST00000596332 TMPRSS6Q8IU80 811 aa10.74□□□□□ -0.69
LIG1-210ENST00000596332 CREG2Q8IUH2 290 aa10.74□□□□□ -0.69
LIG1-210ENST00000596332 AADATQ8N5Z0 425 aa10.74□□□□□ -0.69
LIG1-210ENST00000596332 PCDH20Q8N6Y1 951 aaKnown RBP10.74□□□□□ -0.69
LIG1-210ENST00000596332 OR2AP1Q8NGE2 309 aa10.74□□□□□ -0.69
LIG1-210ENST00000596332 CASKIN2Q8WXE0 1202 aa10.74□□□□□ -0.69
LIG1-210ENST00000596332 TADA1Q96BN2 335 aa10.74□□□□□ -0.69
LIG1-210ENST00000596332 OSBPL9Q96SU4 736 aa10.74□□□□□ -0.69
LIG1-210ENST00000596332 MAK16Q9BXY0 300 aaKnown RBP10.74□□□□□ -0.69
LIG1-210ENST00000596332 ITM2CQ9NQX7 267 aa10.74□□□□□ -0.69
LIG1-210ENST00000596332 USP36Q9P275 1121 aaKnown RBP10.74□□□□□ -0.69
LIG1-210ENST00000596332 MBD1Q9UIS9 605 aaPredicted RBP10.74□□□□□ -0.69
LIG1-210ENST00000596332 TTC7AQ9ULT0 858 aaPredicted RBP10.74□□□□□ -0.69
LIG1-210ENST00000596332 SNX12Q9UMY4 172 aa10.74□□□□□ -0.69
LIG1-210ENST00000596332 USP34Q70CQ2 3546 aa10.73□□□□□ -0.69
LIG1-210ENST00000596332 CCDC163A0A0D9SF12 145 aa10.73□□□□□ -0.69
LIG1-210ENST00000596332 BCLAF3A2AJT9 711 aaKnown RBP10.73□□□□□ -0.69
LIG1-210ENST00000596332 PDE2AO00408 941 aaPredicted RBP10.73□□□□□ -0.69
LIG1-210ENST00000596332 PLK4O00444 970 aa10.73□□□□□ -0.69
LIG1-210ENST00000596332 TRAFD1O14545 582 aaPredicted RBP10.73□□□□□ -0.69
LIG1-210ENST00000596332 SPINT1O43278 529 aa10.73□□□□□ -0.69
LIG1-210ENST00000596332 LAMTOR5O43504 91 aa10.73□□□□□ -0.69
LIG1-210ENST00000596332 KIF5CO60282 957 aa10.73□□□□□ -0.69
LIG1-210ENST00000596332 APBB3O95704 486 aa10.73□□□□□ -0.69
LIG1-210ENST00000596332 JCHAINP01591 159 aa10.73□□□□□ -0.69
LIG1-210ENST00000596332 IGLV3-19P01714 112 aa10.73□□□□□ -0.69
LIG1-210ENST00000596332 CCNB1P14635 433 aa10.73□□□□□ -0.69
LIG1-210ENST00000596332 PTPN3P26045 913 aa10.73□□□□□ -0.69
LIG1-210ENST00000596332 RBL1P28749 1068 aa10.73□□□□□ -0.69
LIG1-210ENST00000596332 CHRNA3P32297 505 aa10.73□□□□□ -0.69
LIG1-210ENST00000596332 CCNHP51946 323 aaPredicted RBP10.73□□□□□ -0.69
LIG1-210ENST00000596332 MAXP61244 160 aa10.73□□□□□ -0.69
LIG1-210ENST00000596332 GNG11P61952 73 aa10.73□□□□□ -0.69
LIG1-210ENST00000596332 SRSF5Q13243 272 aaKnown RBP10.73□□□□□ -0.69
LIG1-210ENST00000596332 XRCC4Q13426 336 aa10.73□□□□□ -0.69
LIG1-210ENST00000596332 ELAVL3Q14576 367 aaKnown RBP10.73□□□□□ -0.69
LIG1-210ENST00000596332 RFTN1Q14699 578 aaPredicted RBP10.73□□□□□ -0.69
LIG1-210ENST00000596332 OASLQ15646 514 aaKnown RBP10.73□□□□□ -0.69
LIG1-210ENST00000596332 KCTD19Q17RG1 926 aaPredicted RBP10.73□□□□□ -0.69
LIG1-210ENST00000596332 ACCSLQ4AC99 568 aa10.73□□□□□ -0.69
LIG1-210ENST00000596332 TMCO4Q5TGY1 634 aa10.73□□□□□ -0.69
LIG1-210ENST00000596332 SDE2Q6IQ49 451 aa10.73□□□□□ -0.69
LIG1-210ENST00000596332 ANO7Q6IWH7 933 aa10.73□□□□□ -0.69
LIG1-210ENST00000596332 NCEH1Q6PIU2 408 aa10.73□□□□□ -0.69
LIG1-210ENST00000596332 ZC3H18Q86VM9 953 aaKnown RBP10.73□□□□□ -0.69
LIG1-210ENST00000596332 WDR5BQ86VZ2 330 aa10.73□□□□□ -0.69
LIG1-210ENST00000596332 MMAAQ8IVH4 418 aaKnown RBP10.73□□□□□ -0.69
LIG1-210ENST00000596332 CCDC13Q8IYE1 715 aa10.73□□□□□ -0.69
LIG1-210ENST00000596332 ATPAF2Q8N5M1 289 aa10.73□□□□□ -0.69
LIG1-210ENST00000596332 PRELID2Q8N945 189 aa10.73□□□□□ -0.69
LIG1-210ENST00000596332 TMIEQ8NEW7 156 aa10.73□□□□□ -0.69
LIG1-210ENST00000596332 OR6K2Q8NGY2 324 aa10.73□□□□□ -0.69
LIG1-210ENST00000596332 ATG4AQ8WYN0 398 aa10.73□□□□□ -0.69
LIG1-210ENST00000596332 P3H4Q92791 437 aa10.73□□□□□ -0.69
LIG1-210ENST00000596332 ARRDC3Q96B67 414 aa10.73□□□□□ -0.69
LIG1-210ENST00000596332 EXOC2Q96KP1 924 aa10.73□□□□□ -0.69
LIG1-210ENST00000596332 QKIQ96PU8 341 aaKnown RBP eCLIP10.73□□□□□ -0.69
LIG1-210ENST00000596332 MGME1Q9BQP7 344 aa10.73□□□□□ -0.69
LIG1-210ENST00000596332 TPSD1Q9BZJ3 242 aa10.73□□□□□ -0.69
LIG1-210ENST00000596332 TM6SF2Q9BZW4 377 aa10.73□□□□□ -0.69
LIG1-210ENST00000596332 HECAQ9UBI9 543 aaPredicted RBP10.73□□□□□ -0.69
LIG1-210ENST00000596332 EVLQ9UI08 416 aaPredicted RBP10.73□□□□□ -0.69
LIG1-210ENST00000596332 HPCAL4Q9UM19 191 aa10.73□□□□□ -0.69
LIG1-210ENST00000596332 SLC8A2Q9UPR5 921 aa10.73□□□□□ -0.69
LIG1-210ENST00000596332 EML5Q05BV3 1969 aa10.73□□□□□ -0.69
LIG1-210ENST00000596332 ALOX15BO15296 676 aa10.72□□□□□ -0.69
LIG1-210ENST00000596332 LEFTY1O75610 366 aa10.72□□□□□ -0.69
LIG1-210ENST00000596332 TJP3O95049 919 aa10.72□□□□□ -0.69
LIG1-210ENST00000596332 PRLP01236 227 aa10.72□□□□□ -0.69
LIG1-210ENST00000596332 FGGP02679 453 aa10.72□□□□□ -0.69
LIG1-210ENST00000596332 HLA-DQB2P05538 268 aa10.72□□□□□ -0.69
LIG1-210ENST00000596332 MX2P20592 715 aa10.72□□□□□ -0.69
LIG1-210ENST00000596332 NNMTP40261 264 aa10.72□□□□□ -0.69
LIG1-210ENST00000596332 P2RY2P41231 377 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms