RNA–Protein interactions for RNA: ENST00000588857.5

ATG4D-209, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4D, Length 1,555 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-209ENST00000588857 SMAD4Q13485 552 aaKnown RBP22.63■■□□□ 1.21
ATG4D-209ENST00000588857 PDGFRLQ15198 375 aa22.63■■□□□ 1.21
ATG4D-209ENST00000588857 BBS9Q3SYG4 887 aa22.63■■□□□ 1.21
ATG4D-209ENST00000588857 RELL1Q8IUW5 271 aa22.63■■□□□ 1.21
ATG4D-209ENST00000588857 YAF2Q8IY57 180 aa22.63■■□□□ 1.21
ATG4D-209ENST00000588857 ST13P5Q8NFI4 369 aaPredicted RBP22.63■■□□□ 1.21
ATG4D-209ENST00000588857 ACDQ96AP0 544 aa22.63■■□□□ 1.21
ATG4D-209ENST00000588857 MLPHQ9BV36 600 aaPredicted RBP22.63■■□□□ 1.21
ATG4D-209ENST00000588857 SLC2A11Q9BYW1 496 aa22.63■■□□□ 1.21
ATG4D-209ENST00000588857 POLR1EQ9GZS1 481 aaKnown RBP22.63■■□□□ 1.21
ATG4D-209ENST00000588857 PABPC3Q9H361 631 aaKnown RBP22.63■■□□□ 1.21
ATG4D-209ENST00000588857 SEMA4AQ9H3S1 761 aa22.63■■□□□ 1.21
ATG4D-209ENST00000588857 LRRC40Q9H9A6 602 aa22.63■■□□□ 1.21
ATG4D-209ENST00000588857 VIPAS39Q9H9C1 493 aa22.63■■□□□ 1.21
ATG4D-209ENST00000588857 UBP1Q9NZI7 540 aa22.63■■□□□ 1.21
ATG4D-209ENST00000588857 MAXP61244 160 aa22.62■■□□□ 1.21
ATG4D-209ENST00000588857 PLEKHG6Q3KR16 790 aa22.62■■□□□ 1.21
ATG4D-209ENST00000588857 DNAJC21Q5F1R6 531 aaKnown RBP22.62■■□□□ 1.21
ATG4D-209ENST00000588857 CFAP58Q5T655 872 aa22.62■■□□□ 1.21
ATG4D-209ENST00000588857 VITQ6UXI7 678 aa22.62■■□□□ 1.21
ATG4D-209ENST00000588857 LINGO4Q6UY18 593 aa22.62■■□□□ 1.21
ATG4D-209ENST00000588857 MFSD6LQ8IWD5 586 aa22.62■■□□□ 1.21
ATG4D-209ENST00000588857 ZBED8Q8IZ13 594 aa22.62■■□□□ 1.21
ATG4D-209ENST00000588857 SPATA22Q8NHS9 363 aa22.62■■□□□ 1.21
ATG4D-209ENST00000588857 ASIC4Q96FT7 647 aa22.62■■□□□ 1.21
ATG4D-209ENST00000588857 OXNAD1Q96HP4 312 aaPredicted RBP22.62■■□□□ 1.21
ATG4D-209ENST00000588857 ZFYVE19Q96K21 471 aa22.62■■□□□ 1.21
ATG4D-209ENST00000588857 CDC42EP4Q9H3Q1 356 aaKnown RBP22.62■■□□□ 1.21
ATG4D-209ENST00000588857 EBF3Q9H4W6 596 aa22.62■■□□□ 1.21
ATG4D-209ENST00000588857 TNFRSF10AO00220 468 aa22.61■■□□□ 1.21
ATG4D-209ENST00000588857 MAP2K7O14733 419 aa22.61■■□□□ 1.21
ATG4D-209ENST00000588857 ALOX15BO15296 676 aa22.61■■□□□ 1.21
ATG4D-209ENST00000588857 SUN1O94901 812 aa22.61■■□□□ 1.21
ATG4D-209ENST00000588857 MLNP12872 115 aa22.61■■□□□ 1.21
ATG4D-209ENST00000588857 HLA-FP30511 346 aa22.61■■□□□ 1.21
ATG4D-209ENST00000588857 SPARCL1Q14515 664 aa22.61■■□□□ 1.21
ATG4D-209ENST00000588857 SMAD2Q15796 467 aaKnown RBP22.61■■□□□ 1.21
ATG4D-209ENST00000588857 INO80DQ53TQ3 878 aaPredicted RBP22.61■■□□□ 1.21
ATG4D-209ENST00000588857 PITRM1Q5JRX3 1037 aa22.61■■□□□ 1.21
ATG4D-209ENST00000588857 KCTD11Q693B1 232 aa22.61■■□□□ 1.21
ATG4D-209ENST00000588857 CAND1Q86VP6 1230 aaKnown RBP22.61■■□□□ 1.21
ATG4D-209ENST00000588857 PGBD5Q8N414 524 aa22.61■■□□□ 1.21
ATG4D-209ENST00000588857 ELSPBP1Q96BH3 223 aa22.61■■□□□ 1.21
ATG4D-209ENST00000588857 IMP4Q96G21 291 aaKnown RBP22.61■■□□□ 1.21
ATG4D-209ENST00000588857 LMLNQ96KR4 655 aa22.61■■□□□ 1.21
ATG4D-209ENST00000588857 PSKH2Q96QS6 385 aa22.61■■□□□ 1.21
ATG4D-209ENST00000588857 XPO6Q96QU8 1125 aaKnown RBP22.61■■□□□ 1.21
ATG4D-209ENST00000588857 ACBD3Q9H3P7 528 aa22.61■■□□□ 1.21
ATG4D-209ENST00000588857 GGA2Q9UJY4 613 aa22.61■■□□□ 1.21
ATG4D-209ENST00000588857 USP15Q9Y4E8 981 aaPredicted RBP22.61■■□□□ 1.21
ATG4D-209ENST00000588857 ACTL7AQ9Y615 435 aa22.61■■□□□ 1.21
ATG4D-209ENST00000588857 E7ESA3 106 aa22.6■■□□□ 1.21
ATG4D-209ENST00000588857 HOXC11O43248 304 aaPredicted RBP22.6■■□□□ 1.21
ATG4D-209ENST00000588857 AVILO75366 819 aa22.6■■□□□ 1.21
ATG4D-209ENST00000588857 MT-CYBP00156 380 aaPredicted RBP22.6■■□□□ 1.21
ATG4D-209ENST00000588857 ARSAP15289 507 aa22.6■■□□□ 1.21
ATG4D-209ENST00000588857 FCHO2Q0JRZ9 810 aa22.6■■□□□ 1.21
ATG4D-209ENST00000588857 MTM1Q13496 603 aa22.6■■□□□ 1.21
ATG4D-209ENST00000588857 UAP1Q16222 522 aaPredicted RBP22.6■■□□□ 1.21
ATG4D-209ENST00000588857 MSS51Q4VC12 460 aa22.6■■□□□ 1.21
ATG4D-209ENST00000588857 HP1BP3Q5SSJ5 553 aaPredicted RBP22.6■■□□□ 1.21
ATG4D-209ENST00000588857 ALS2CLQ60I27 953 aa22.6■■□□□ 1.21
ATG4D-209ENST00000588857 DENND2CQ68D51 928 aa22.6■■□□□ 1.21
ATG4D-209ENST00000588857 NAPEPLDQ6IQ20 393 aa22.6■■□□□ 1.21
ATG4D-209ENST00000588857 LRRC8BQ6P9F7 803 aa22.6■■□□□ 1.21
ATG4D-209ENST00000588857 LINC00523Q86TU6 105 aa22.6■■□□□ 1.21
ATG4D-209ENST00000588857 NAT16Q8N8M0 369 aa22.6■■□□□ 1.21
ATG4D-209ENST00000588857 TTC25Q96NG3 672 aa22.6■■□□□ 1.21
ATG4D-209ENST00000588857 KXD1Q9BQD3 176 aa22.6■■□□□ 1.21
ATG4D-209ENST00000588857 FAM83CQ9BQN1 747 aa22.6■■□□□ 1.21
ATG4D-209ENST00000588857 SASH3O75995 380 aa22.59■■□□□ 1.21
ATG4D-209ENST00000588857 TTC4O95801 387 aa22.59■■□□□ 1.21
ATG4D-209ENST00000588857 PABPC1P11940 636 aaKnown RBP22.59■■□□□ 1.21
ATG4D-209ENST00000588857 PSMC3P17980 439 aa22.59■■□□□ 1.21
ATG4D-209ENST00000588857 CD86P42081 329 aa22.59■■□□□ 1.21
ATG4D-209ENST00000588857 GRIA1P42261 906 aa22.59■■□□□ 1.21
ATG4D-209ENST00000588857 DSC2Q02487 901 aa22.59■■□□□ 1.21
ATG4D-209ENST00000588857 MPP3Q13368 585 aa22.59■■□□□ 1.21
ATG4D-209ENST00000588857 DMC1Q14565 340 aa22.59■■□□□ 1.21
ATG4D-209ENST00000588857 CYTH1Q15438 398 aa22.59■■□□□ 1.21
ATG4D-209ENST00000588857 KYNUQ16719 465 aa22.59■■□□□ 1.21
ATG4D-209ENST00000588857 ASTLQ6HA08 431 aaPredicted RBP22.59■■□□□ 1.21
ATG4D-209ENST00000588857 ZNF534Q76KX8 674 aa22.59■■□□□ 1.21
ATG4D-209ENST00000588857 KLHDC8BQ8IXV7 354 aa22.59■■□□□ 1.21
ATG4D-209ENST00000588857 PYROXD1Q8WU10 500 aa22.59■■□□□ 1.21
ATG4D-209ENST00000588857 C9orf72Q96LT7 481 aa22.59■■□□□ 1.21
ATG4D-209ENST00000588857 SEMA3CQ99985 751 aa22.59■■□□□ 1.21
ATG4D-209ENST00000588857 MGME1Q9BQP7 344 aa22.59■■□□□ 1.21
ATG4D-209ENST00000588857 VPS45Q9NRW7 570 aa22.59■■□□□ 1.21
ATG4D-209ENST00000588857 INTS6Q9UL03 887 aaKnown RBP22.59■■□□□ 1.21
ATG4D-209ENST00000588857 RIPK2O43353 540 aa22.59■■□□□ 1.21
ATG4D-209ENST00000588857 PMPCBO75439 489 aa22.59■■□□□ 1.21
ATG4D-209ENST00000588857 BANF1O75531 89 aa22.59■■□□□ 1.21
ATG4D-209ENST00000588857 TMCC1O94876 653 aa22.59■■□□□ 1.21
ATG4D-209ENST00000588857 SLC20A2Q08357 652 aa22.59■■□□□ 1.21
ATG4D-209ENST00000588857 NIPAL4Q0D2K0 466 aa22.59■■□□□ 1.21
ATG4D-209ENST00000588857 CBLBQ13191 982 aa22.59■■□□□ 1.21
ATG4D-209ENST00000588857 FASTKD3Q14CZ7 662 aaKnown RBP22.59■■□□□ 1.21
ATG4D-209ENST00000588857 PARM1Q6UWI2 310 aa22.59■■□□□ 1.21
ATG4D-209ENST00000588857 MTSS1LQ765P7 747 aa22.59■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms