RNA–Protein interactions for RNA: ENST00000588131.1

VMP1-207, Transcript of vacuole membrane protein 1, humanhuman

TSL 2

Gene VMP1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-207ENST00000588131 DSC2Q02487 901 aa11.49□□□□□ -0.57
VMP1-207ENST00000588131 ITKQ08881 620 aa11.49□□□□□ -0.57
VMP1-207ENST00000588131 MESP2Q0VG99 397 aa11.49□□□□□ -0.57
VMP1-207ENST00000588131 OLIG2Q13516 323 aa11.49□□□□□ -0.57
VMP1-207ENST00000588131 SPARCL1Q14515 664 aa11.49□□□□□ -0.57
VMP1-207ENST00000588131 IHHQ14623 411 aa11.49□□□□□ -0.57
VMP1-207ENST00000588131 RFTN1Q14699 578 aaPredicted RBP11.49□□□□□ -0.57
VMP1-207ENST00000588131 AAK1Q2M2I8 961 aa11.49□□□□□ -0.57
VMP1-207ENST00000588131 LEXMQ3ZCV2 418 aa11.49□□□□□ -0.57
VMP1-207ENST00000588131 BEND6Q5SZJ8 279 aaPredicted RBP11.49□□□□□ -0.57
VMP1-207ENST00000588131 MBLAC2Q68D91 279 aa11.49□□□□□ -0.57
VMP1-207ENST00000588131 KCTD11Q693B1 232 aa11.49□□□□□ -0.57
VMP1-207ENST00000588131 ZNF534Q76KX8 674 aa11.49□□□□□ -0.57
VMP1-207ENST00000588131 PRPF39Q86UA1 669 aaKnown RBP11.49□□□□□ -0.57
VMP1-207ENST00000588131 KLHDC8BQ8IXV7 354 aa11.49□□□□□ -0.57
VMP1-207ENST00000588131 ZCCHC9Q8N567 271 aaKnown RBP11.49□□□□□ -0.57
VMP1-207ENST00000588131 ZNF557Q8N988 423 aaPredicted RBP11.49□□□□□ -0.57
VMP1-207ENST00000588131 ARRDC2Q8TBH0 407 aa11.49□□□□□ -0.57
VMP1-207ENST00000588131 HNRNPLLQ8WVV9 542 aaKnown RBP11.49□□□□□ -0.57
VMP1-207ENST00000588131 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP11.49□□□□□ -0.57
VMP1-207ENST00000588131 ACDQ96AP0 544 aa11.49□□□□□ -0.57
VMP1-207ENST00000588131 EXOC2Q96KP1 924 aa11.49□□□□□ -0.57
VMP1-207ENST00000588131 PSKH2Q96QS6 385 aa11.49□□□□□ -0.57
VMP1-207ENST00000588131 CINPQ9BW66 212 aaPredicted RBP11.49□□□□□ -0.57
VMP1-207ENST00000588131 EIF2B3Q9NR50 452 aaKnown RBP11.49□□□□□ -0.57
VMP1-207ENST00000588131 ARGLU1Q9NWB6 273 aaPredicted RBP11.49□□□□□ -0.57
VMP1-207ENST00000588131 LHX3Q9UBR4 397 aa11.49□□□□□ -0.57
VMP1-207ENST00000588131 MTRF1LQ9UGC7 380 aaKnown RBP11.49□□□□□ -0.57
VMP1-207ENST00000588131 SEPT3Q9UH03 358 aa11.49□□□□□ -0.57
VMP1-207ENST00000588131 FCF1Q9Y324 198 aaKnown RBP11.49□□□□□ -0.57
VMP1-207ENST00000588131 TICRRQ7Z2Z1 1910 aa11.48□□□□□ -0.57
VMP1-207ENST00000588131 SMAD6O43541 496 aaKnown RBP11.48□□□□□ -0.57
VMP1-207ENST00000588131 BANF1O75531 89 aa11.48□□□□□ -0.57
VMP1-207ENST00000588131 AP2A1O95782 977 aa11.48□□□□□ -0.57
VMP1-207ENST00000588131 SRCP12931 536 aa11.48□□□□□ -0.57
VMP1-207ENST00000588131 GJA4P35212 333 aa11.48□□□□□ -0.57
VMP1-207ENST00000588131 LMAN1P49257 510 aa11.48□□□□□ -0.57
VMP1-207ENST00000588131 SERPINH1P50454 418 aaKnown RBP11.48□□□□□ -0.57
VMP1-207ENST00000588131 KDSRQ06136 332 aa11.48□□□□□ -0.57
VMP1-207ENST00000588131 MTM1Q13496 603 aa11.48□□□□□ -0.57
VMP1-207ENST00000588131 PRPSAP1Q14558 356 aa11.48□□□□□ -0.57
VMP1-207ENST00000588131 DMC1Q14565 340 aa11.48□□□□□ -0.57
VMP1-207ENST00000588131 SMAD2Q15796 467 aaKnown RBP11.48□□□□□ -0.57
VMP1-207ENST00000588131 MAP9Q49MG5 647 aa11.48□□□□□ -0.57
VMP1-207ENST00000588131 MSS51Q4VC12 460 aa11.48□□□□□ -0.57
VMP1-207ENST00000588131 INO80DQ53TQ3 878 aaPredicted RBP11.48□□□□□ -0.57
VMP1-207ENST00000588131 FNBP1LQ5T0N5 605 aa11.48□□□□□ -0.57
VMP1-207ENST00000588131 GRAMD4Q6IC98 578 aa11.48□□□□□ -0.57
VMP1-207ENST00000588131 RETSATQ6NUM9 610 aa11.48□□□□□ -0.57
VMP1-207ENST00000588131 EMBQ6PCB8 327 aa11.48□□□□□ -0.57
VMP1-207ENST00000588131 CCDC25Q86WR0 208 aa11.48□□□□□ -0.57
VMP1-207ENST00000588131 RNF135Q8IUD6 432 aa11.48□□□□□ -0.57
VMP1-207ENST00000588131 AHI1Q8N157 1196 aa11.48□□□□□ -0.57
VMP1-207ENST00000588131 PHTF2Q8N3S3 785 aa11.48□□□□□ -0.57
VMP1-207ENST00000588131 CAVIN3Q969G5 261 aa11.48□□□□□ -0.57
VMP1-207ENST00000588131 IMP4Q96G21 291 aaKnown RBP11.48□□□□□ -0.57
VMP1-207ENST00000588131 NSMCE3Q96MG7 304 aa11.48□□□□□ -0.57
VMP1-207ENST00000588131 RBM15Q96T37 977 aaKnown RBP eCLIP11.48□□□□□ -0.57
VMP1-207ENST00000588131 SEMA3CQ99985 751 aa11.48□□□□□ -0.57
VMP1-207ENST00000588131 MGME1Q9BQP7 344 aa11.48□□□□□ -0.57
VMP1-207ENST00000588131 PHF7Q9BWX1 381 aaPredicted RBP11.48□□□□□ -0.57
VMP1-207ENST00000588131 TXLNGYQ9BZA5 131 aa11.48□□□□□ -0.57
VMP1-207ENST00000588131 POLR1EQ9GZS1 481 aaKnown RBP11.48□□□□□ -0.57
VMP1-207ENST00000588131 SLC25A51Q9H1U9 297 aa11.48□□□□□ -0.57
VMP1-207ENST00000588131 BRD9Q9H8M2 597 aa11.48□□□□□ -0.57
VMP1-207ENST00000588131 PRDM6Q9NQX0 595 aa11.48□□□□□ -0.57
VMP1-207ENST00000588131 PLSCR2Q9NRY7 297 aa11.48□□□□□ -0.57
VMP1-207ENST00000588131 LIMD1Q9UGP4 676 aa11.48□□□□□ -0.57
VMP1-207ENST00000588131 SLC27A6Q9Y2P4 619 aa11.48□□□□□ -0.57
VMP1-207ENST00000588131 MUC22E2RYF6 1773 aaPredicted RBP11.47□□□□□ -0.57
VMP1-207ENST00000588131 SMAPO00193 183 aa11.47□□□□□ -0.57
VMP1-207ENST00000588131 USP12O75317 370 aa11.47□□□□□ -0.57
VMP1-207ENST00000588131 ZNF821O75541 412 aaPredicted RBP11.47□□□□□ -0.57
VMP1-207ENST00000588131 SUN1O94901 812 aa11.47□□□□□ -0.57
VMP1-207ENST00000588131 IL9P15248 144 aa11.47□□□□□ -0.57
VMP1-207ENST00000588131 CR2P20023 1033 aa11.47□□□□□ -0.57
VMP1-207ENST00000588131 CD86P42081 329 aa11.47□□□□□ -0.57
VMP1-207ENST00000588131 TNNT3P45378 269 aaPredicted RBP11.47□□□□□ -0.57
VMP1-207ENST00000588131 SOX9P48436 509 aa11.47□□□□□ -0.57
VMP1-207ENST00000588131 GEMP55040 296 aa11.47□□□□□ -0.57
VMP1-207ENST00000588131 GEMIN4P57678 1058 aaKnown RBP11.47□□□□□ -0.57
VMP1-207ENST00000588131 SKOR1P84550 965 aa11.47□□□□□ -0.57
VMP1-207ENST00000588131 TFF2Q03403 129 aa11.47□□□□□ -0.57
VMP1-207ENST00000588131 DHX9Q08211 1270 aaKnown RBP11.47□□□□□ -0.57
VMP1-207ENST00000588131 NR1H3Q13133 447 aa11.47□□□□□ -0.57
VMP1-207ENST00000588131 ITPRIPL2Q3MIP1 535 aa11.47□□□□□ -0.57
VMP1-207ENST00000588131 UBAP2Q5T6F2 1119 aaKnown RBP11.47□□□□□ -0.57
VMP1-207ENST00000588131 ALG1LQ6GMV1 187 aa11.47□□□□□ -0.57
VMP1-207ENST00000588131 PTCRAQ6ISU1 281 aaPredicted RBP11.47□□□□□ -0.57
VMP1-207ENST00000588131 KDELC1Q6UW63 502 aa11.47□□□□□ -0.57
VMP1-207ENST00000588131 TMC3Q7Z5M5 1100 aa11.47□□□□□ -0.57
VMP1-207ENST00000588131 CAND1Q86VP6 1230 aaKnown RBP11.47□□□□□ -0.57
VMP1-207ENST00000588131 SFTPA1Q8IWL2 248 aa11.47□□□□□ -0.57
VMP1-207ENST00000588131 AGGF1Q8N302 714 aaeCLIP11.47□□□□□ -0.57
VMP1-207ENST00000588131 BBS5Q8N3I7 341 aa11.47□□□□□ -0.57
VMP1-207ENST00000588131 MCUQ8NE86 351 aa11.47□□□□□ -0.57
VMP1-207ENST00000588131 IPMKQ8NFU5 416 aa11.47□□□□□ -0.57
VMP1-207ENST00000588131 WFIKKN2Q8TEU8 576 aa11.47□□□□□ -0.57
VMP1-207ENST00000588131 CYB5D2Q8WUJ1 264 aa11.47□□□□□ -0.57
VMP1-207ENST00000588131 SORCS1Q8WY21 1168 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms