RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 TDRD7Q8NHU6 1098 aaKnown RBP4.02□□□□□ -1.77
SMCHD1-209ENST00000583441 FAM110DQ8TAY7 271 aaPredicted RBP4.02□□□□□ -1.77
SMCHD1-209ENST00000583441 C2CD4CQ8TF44 421 aa4.02□□□□□ -1.77
SMCHD1-209ENST00000583441 UCMAQ8WVF2 138 aa4.02□□□□□ -1.77
SMCHD1-209ENST00000583441 ELP4Q96EB1 424 aa4.02□□□□□ -1.77
SMCHD1-209ENST00000583441 CLMNQ96JQ2 1002 aa4.02□□□□□ -1.77
SMCHD1-209ENST00000583441 TEFMQ96QE5 360 aaKnown RBP4.02□□□□□ -1.77
SMCHD1-209ENST00000583441 EYA3Q99504 573 aa4.02□□□□□ -1.77
SMCHD1-209ENST00000583441 TREX2Q9BQ50 279 aaPredicted RBP4.02□□□□□ -1.77
SMCHD1-209ENST00000583441 EFHD1Q9BUP0 239 aa4.02□□□□□ -1.77
SMCHD1-209ENST00000583441 EPHX3Q9H6B9 360 aa4.02□□□□□ -1.77
SMCHD1-209ENST00000583441 IL21RQ9HBE5 538 aa4.02□□□□□ -1.77
SMCHD1-209ENST00000583441 ENTPD7Q9NQZ7 604 aa4.02□□□□□ -1.77
SMCHD1-209ENST00000583441 MTPAPQ9NVV4 582 aaKnown RBP eCLIP4.02□□□□□ -1.77
SMCHD1-209ENST00000583441 MAP3K20Q9NYL2 800 aaKnown RBP4.02□□□□□ -1.77
SMCHD1-209ENST00000583441 MPP6Q9NZW5 540 aa4.02□□□□□ -1.77
SMCHD1-209ENST00000583441 UPB1Q9UBR1 384 aa4.02□□□□□ -1.77
SMCHD1-209ENST00000583441 AASSQ9UDR5 926 aa4.02□□□□□ -1.77
SMCHD1-209ENST00000583441 C17orf113A0A1B0GUU1 675 aa4.01□□□□□ -1.77
SMCHD1-209ENST00000583441 OR6C68A6NDL8 312 aa4.01□□□□□ -1.77
SMCHD1-209ENST00000583441 PER2O15055 1255 aa4.01□□□□□ -1.77
SMCHD1-209ENST00000583441 SPTLC2O15270 562 aa4.01□□□□□ -1.77
SMCHD1-209ENST00000583441 SCGB1D1O95968 90 aa4.01□□□□□ -1.77
SMCHD1-209ENST00000583441 NHLRC4P0CG21 123 aaPredicted RBP4.01□□□□□ -1.77
SMCHD1-209ENST00000583441 HSPA1AP0DMV8 641 aaKnown RBP4.01□□□□□ -1.77
SMCHD1-209ENST00000583441 HSPA1BP0DMV9 641 aaKnown RBP4.01□□□□□ -1.77
SMCHD1-209ENST00000583441 ST6GAL1P15907 406 aa4.01□□□□□ -1.77
SMCHD1-209ENST00000583441 GGT5P36269 586 aa4.01□□□□□ -1.77
SMCHD1-209ENST00000583441 CYP2J2P51589 502 aa4.01□□□□□ -1.77
SMCHD1-209ENST00000583441 CCR9P51686 369 aa4.01□□□□□ -1.77
SMCHD1-209ENST00000583441 PTP4A2Q12974 167 aa4.01□□□□□ -1.77
SMCHD1-209ENST00000583441 AP5B1Q2VPB7 878 aa4.01□□□□□ -1.77
SMCHD1-209ENST00000583441 FAM69AQ5T7M9 428 aa4.01□□□□□ -1.77
SMCHD1-209ENST00000583441 FAM171A1Q5VUB5 890 aa4.01□□□□□ -1.77
SMCHD1-209ENST00000583441 CYB5R4Q7L1T6 521 aa4.01□□□□□ -1.77
SMCHD1-209ENST00000583441 RNF144BQ7Z419 303 aa4.01□□□□□ -1.77
SMCHD1-209ENST00000583441 R3HCC1LQ7Z5L2 792 aaKnown RBP4.01□□□□□ -1.77
SMCHD1-209ENST00000583441 UBE2Q1Q7Z7E8 422 aa4.01□□□□□ -1.77
SMCHD1-209ENST00000583441 IGFN1Q86VF2 1251 aa4.01□□□□□ -1.77
SMCHD1-209ENST00000583441 MON1AQ86VX9 555 aa4.01□□□□□ -1.77
SMCHD1-209ENST00000583441 GHDCQ8N2G8 530 aa4.01□□□□□ -1.77
SMCHD1-209ENST00000583441 SCAIQ8N9R8 606 aa4.01□□□□□ -1.77
SMCHD1-209ENST00000583441 C11orf65Q8NCR3 313 aa4.01□□□□□ -1.77
SMCHD1-209ENST00000583441 PIGOQ8TEQ8 1089 aa4.01□□□□□ -1.77
SMCHD1-209ENST00000583441 RUFY2Q8WXA3 655 aa4.01□□□□□ -1.77
SMCHD1-209ENST00000583441 CENPIQ92674 756 aaPredicted RBP4.01□□□□□ -1.77
SMCHD1-209ENST00000583441 SAAL1Q96ER3 474 aa4.01□□□□□ -1.77
SMCHD1-209ENST00000583441 TIGD1Q96MW7 591 aa4.01□□□□□ -1.77
SMCHD1-209ENST00000583441 FAM118BQ9BPY3 351 aa4.01□□□□□ -1.77
SMCHD1-209ENST00000583441 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP4.01□□□□□ -1.77
SMCHD1-209ENST00000583441 TM2D2Q9BX73 214 aa4.01□□□□□ -1.77
SMCHD1-209ENST00000583441 XRN2Q9H0D6 950 aaKnown RBP eCLIP4.01□□□□□ -1.77
SMCHD1-209ENST00000583441 Q9N2J8 555 aa4.01□□□□□ -1.77
SMCHD1-209ENST00000583441 TLR8Q9NR97 1041 aaKnown RBP4.01□□□□□ -1.77
SMCHD1-209ENST00000583441 TBC1D22BQ9NU19 505 aa4.01□□□□□ -1.77
SMCHD1-209ENST00000583441 TERF2IPQ9NYB0 399 aa4.01□□□□□ -1.77
SMCHD1-209ENST00000583441 KCND2Q9NZV8 630 aa4.01□□□□□ -1.77
SMCHD1-209ENST00000583441 ORC3Q9UBD5 711 aaPredicted RBP4.01□□□□□ -1.77
SMCHD1-209ENST00000583441 FBXO9Q9UK97 447 aaPredicted RBP4.01□□□□□ -1.77
SMCHD1-209ENST00000583441 CNPY2Q9Y2B0 182 aa4.01□□□□□ -1.77
SMCHD1-209ENST00000583441 CLDN16Q9Y5I7 305 aa4.01□□□□□ -1.77
SMCHD1-209ENST00000583441 SCINQ9Y6U3 715 aa4.01□□□□□ -1.77
SMCHD1-209ENST00000583441 DPPA5A6NC42 116 aa4□□□□□ -1.77
SMCHD1-209ENST00000583441 TTC36A6NLP5 189 aa4□□□□□ -1.77
SMCHD1-209ENST00000583441 CCNDBP1O95273 360 aa4□□□□□ -1.77
SMCHD1-209ENST00000583441 NFATC1O95644 943 aa4□□□□□ -1.77
SMCHD1-209ENST00000583441 COX7A2P14406 83 aa4□□□□□ -1.77
SMCHD1-209ENST00000583441 HOXA7P31268 230 aaPredicted RBP4□□□□□ -1.77
SMCHD1-209ENST00000583441 ABCD1P33897 745 aa4□□□□□ -1.77
SMCHD1-209ENST00000583441 BLKP51451 505 aa4□□□□□ -1.77
SMCHD1-209ENST00000583441 DCAF7P61962 342 aa4□□□□□ -1.77
SMCHD1-209ENST00000583441 FOXD4Q12950 439 aaPredicted RBP4□□□□□ -1.77
SMCHD1-209ENST00000583441 PDE1CQ14123 709 aaPredicted RBP4□□□□□ -1.77
SMCHD1-209ENST00000583441 SLC18A3Q16572 532 aa4□□□□□ -1.77
SMCHD1-209ENST00000583441 TSTQ16762 297 aaKnown RBP4□□□□□ -1.77
SMCHD1-209ENST00000583441 ARL13AQ5H913 290 aaPredicted RBP4□□□□□ -1.77
SMCHD1-209ENST00000583441 SH2D4BQ5SQS7 431 aa4□□□□□ -1.77
SMCHD1-209ENST00000583441 TMEM268Q5VZI3 342 aa4□□□□□ -1.77
SMCHD1-209ENST00000583441 ISM2Q6H9L7 571 aa4□□□□□ -1.77
SMCHD1-209ENST00000583441 TMED8Q6PL24 325 aaPredicted RBP4□□□□□ -1.77
SMCHD1-209ENST00000583441 SHC4Q6S5L8 630 aa4□□□□□ -1.77
SMCHD1-209ENST00000583441 ATF7IPQ6VMQ6 1270 aa4□□□□□ -1.77
SMCHD1-209ENST00000583441 TMTC3Q6ZXV5 915 aa4□□□□□ -1.77
SMCHD1-209ENST00000583441 H1FNTQ75WM6 255 aaPredicted RBP4□□□□□ -1.77
SMCHD1-209ENST00000583441 GADD45GIP1Q8TAE8 222 aaPredicted RBP4□□□□□ -1.77
SMCHD1-209ENST00000583441 HSPH1Q92598 858 aa4□□□□□ -1.77
SMCHD1-209ENST00000583441 MAP4K1Q92918 833 aa4□□□□□ -1.77
SMCHD1-209ENST00000583441 KIF1BPQ96EK5 621 aa4□□□□□ -1.77
SMCHD1-209ENST00000583441 LMAN2LQ9H0V9 348 aa4□□□□□ -1.77
SMCHD1-209ENST00000583441 SEMA4BQ9NPR2 832 aaPredicted RBP4□□□□□ -1.77
SMCHD1-209ENST00000583441 IL1RAPL1Q9NZN1 696 aa4□□□□□ -1.77
SMCHD1-209ENST00000583441 SARDHQ9UL12 918 aa4□□□□□ -1.77
SMCHD1-209ENST00000583441 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP3.99□□□□□ -1.77
SMCHD1-209ENST00000583441 SLC22A23A1A5C7 686 aa3.99□□□□□ -1.77
SMCHD1-209ENST00000583441 ANKRD18BA2A2Z9 1011 aa3.99□□□□□ -1.77
SMCHD1-209ENST00000583441 PGPEP1LA6NFU8 196 aa3.99□□□□□ -1.77
SMCHD1-209ENST00000583441 C17orf100A8MU93 164 aa3.99□□□□□ -1.77
SMCHD1-209ENST00000583441 F8W810 466 aa3.99□□□□□ -1.77
SMCHD1-209ENST00000583441 NTN3O00634 580 aaPredicted RBP3.99□□□□□ -1.77
SMCHD1-209ENST00000583441 ZBED4O75132 1171 aa3.99□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms