RNA–Protein interactions for RNA: ENST00000581021.5

SS18-218, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-218ENST00000581021 PPP2CBP62714 309 aa20.48■□□□□ 0.87
SS18-218ENST00000581021 PPP2CAP67775 309 aa20.48■□□□□ 0.87
SS18-218ENST00000581021 MMRN1Q13201 1228 aa20.48■□□□□ 0.87
SS18-218ENST00000581021 DUOXA1Q1HG43 343 aa20.48■□□□□ 0.87
SS18-218ENST00000581021 CARD16Q5EG05 197 aa20.48■□□□□ 0.87
SS18-218ENST00000581021 WDR45BQ5MNZ6 344 aa20.48■□□□□ 0.87
SS18-218ENST00000581021 SYCP2LQ5T4T6 812 aa20.48■□□□□ 0.87
SS18-218ENST00000581021 KIAA0895LQ68EN5 471 aa20.48■□□□□ 0.87
SS18-218ENST00000581021 ZNF354CQ86Y25 554 aa20.48■□□□□ 0.87
SS18-218ENST00000581021 TMIEQ8NEW7 156 aa20.48■□□□□ 0.87
SS18-218ENST00000581021 OR14C36Q8NHC7 312 aa20.48■□□□□ 0.87
SS18-218ENST00000581021 SNX19Q92543 992 aa20.48■□□□□ 0.87
SS18-218ENST00000581021 ISG20Q96AZ6 181 aaKnown RBP20.48■□□□□ 0.87
SS18-218ENST00000581021 MIR1-1HGQ9H1L0 117 aa20.48■□□□□ 0.87
SS18-218ENST00000581021 LHX3Q9UBR4 397 aa20.48■□□□□ 0.87
SS18-218ENST00000581021 IL36AQ9UHA7 158 aa20.48■□□□□ 0.87
SS18-218ENST00000581021 CDV3Q9UKY7 258 aaKnown RBP20.48■□□□□ 0.87
SS18-218ENST00000581021 HPCAL4Q9UM19 191 aa20.48■□□□□ 0.87
SS18-218ENST00000581021 CACNA1EQ15878 2313 aa20.48■□□□□ 0.87
SS18-218ENST00000581021 SOWAHDA6NJG2 315 aa20.47■□□□□ 0.87
SS18-218ENST00000581021 C1QTNF3-AMACRE9PGA6 284 aa20.47■□□□□ 0.87
SS18-218ENST00000581021 KPNA3O00505 521 aaPredicted RBP20.47■□□□□ 0.87
SS18-218ENST00000581021 SLC30A4O14863 429 aa20.47■□□□□ 0.87
SS18-218ENST00000581021 DAPK3O43293 454 aa20.47■□□□□ 0.87
SS18-218ENST00000581021 FOXD2O60548 495 aaPredicted RBP20.47■□□□□ 0.87
SS18-218ENST00000581021 PRAMEF11O60813 436 aa20.47■□□□□ 0.87
SS18-218ENST00000581021 SERPINF2P08697 491 aa20.47■□□□□ 0.87
SS18-218ENST00000581021 ENGP17813 658 aa20.47■□□□□ 0.87
SS18-218ENST00000581021 MAN1A1P33908 653 aa20.47■□□□□ 0.87
SS18-218ENST00000581021 DPP6P42658 865 aa20.47■□□□□ 0.87
SS18-218ENST00000581021 SSR1P43307 286 aaKnown RBP20.47■□□□□ 0.87
SS18-218ENST00000581021 ID4P47928 161 aa20.47■□□□□ 0.87
SS18-218ENST00000581021 ZNF135P52742 658 aaPredicted RBP20.47■□□□□ 0.87
SS18-218ENST00000581021 LIMK1P53667 647 aa20.47■□□□□ 0.87
SS18-218ENST00000581021 GEMIN4P57678 1058 aaKnown RBP20.47■□□□□ 0.87
SS18-218ENST00000581021 BNC1Q01954 994 aa20.47■□□□□ 0.87
SS18-218ENST00000581021 CYTH1Q15438 398 aa20.47■□□□□ 0.87
SS18-218ENST00000581021 STPG1Q5TH74 334 aa20.47■□□□□ 0.87
SS18-218ENST00000581021 FAM46CQ5VWP2 391 aa20.47■□□□□ 0.87
SS18-218ENST00000581021 OR2I1PQ8NGU4 316 aa20.47■□□□□ 0.87
SS18-218ENST00000581021 OR2T34Q8NGX1 318 aa20.47■□□□□ 0.87
SS18-218ENST00000581021 RFFLQ8WZ73 363 aa20.47■□□□□ 0.87
SS18-218ENST00000581021 CCDC114Q96M63 670 aa20.47■□□□□ 0.87
SS18-218ENST00000581021 PANX2Q96RD6 677 aa20.47■□□□□ 0.87
SS18-218ENST00000581021 HECAQ9UBI9 543 aaPredicted RBP20.47■□□□□ 0.87
SS18-218ENST00000581021 SLC6A14Q9UN76 642 aa20.47■□□□□ 0.87
SS18-218ENST00000581021 ZSCAN5CA6NGD5 496 aaPredicted RBP20.46■□□□□ 0.87
SS18-218ENST00000581021 PLRG1O43660 514 aaKnown RBP20.46■□□□□ 0.87
SS18-218ENST00000581021 GSRP00390 522 aa20.46■□□□□ 0.87
SS18-218ENST00000581021 CDH6P55285 790 aa20.46■□□□□ 0.87
SS18-218ENST00000581021 DPYSL3Q14195 570 aa20.46■□□□□ 0.87
SS18-218ENST00000581021 MESDQ14696 234 aa20.46■□□□□ 0.87
SS18-218ENST00000581021 LAYNQ6UX15 382 aa20.46■□□□□ 0.87
SS18-218ENST00000581021 OR2AP1Q8NGE2 309 aa20.46■□□□□ 0.87
SS18-218ENST00000581021 HEPHQ9BQS7 1158 aa20.46■□□□□ 0.87
SS18-218ENST00000581021 ZDHHC6Q9H6R6 413 aa20.46■□□□□ 0.87
SS18-218ENST00000581021 ADAMTS9Q9P2N4 1935 aa20.46■□□□□ 0.87
SS18-218ENST00000581021 C4orf47A7E2U8 309 aa20.45■□□□□ 0.86
SS18-218ENST00000581021 DFFAO00273 331 aa20.45■□□□□ 0.86
SS18-218ENST00000581021 INSIG1O15503 277 aa20.45■□□□□ 0.86
SS18-218ENST00000581021 PRNPP04156 253 aa20.45■□□□□ 0.86
SS18-218ENST00000581021 ARL4AP40617 200 aa20.45■□□□□ 0.86
SS18-218ENST00000581021 MAPK8P45983 427 aa20.45■□□□□ 0.86
SS18-218ENST00000581021 RECQLP46063 649 aaPredicted RBP20.45■□□□□ 0.86
SS18-218ENST00000581021 TCEAL1Q15170 157 aa20.45■□□□□ 0.86
SS18-218ENST00000581021 INO80DQ53TQ3 878 aaPredicted RBP20.45■□□□□ 0.86
SS18-218ENST00000581021 PLPP6Q8IY26 295 aa20.45■□□□□ 0.86
SS18-218ENST00000581021 CEP76Q8TAP6 659 aa20.45■□□□□ 0.86
SS18-218ENST00000581021 EXOC2Q96KP1 924 aa20.45■□□□□ 0.86
SS18-218ENST00000581021 NUSAP1Q9BXS6 441 aaKnown RBP20.45■□□□□ 0.86
SS18-218ENST00000581021 TM9SF3Q9HD45 589 aa20.45■□□□□ 0.86
SS18-218ENST00000581021 UBA2Q9UBT2 640 aaPredicted RBP20.45■□□□□ 0.86
SS18-218ENST00000581021 INTUQ9ULD6 942 aa20.45■□□□□ 0.86
SS18-218ENST00000581021 REXO2Q9Y3B8 237 aaKnown RBP20.45■□□□□ 0.86
SS18-218ENST00000581021 FARP1Q9Y4F1 1045 aaPredicted RBP20.45■□□□□ 0.86
SS18-218ENST00000581021 PLXNA2O75051 1894 aa20.45■□□□□ 0.86
SS18-218ENST00000581021 A0A1B0GTW7 788 aa20.44■□□□□ 0.86
SS18-218ENST00000581021 RCCD1A6NED2 376 aa20.44■□□□□ 0.86
SS18-218ENST00000581021 ARHGAP42A6NI28 874 aa20.44■□□□□ 0.86
SS18-218ENST00000581021 LRRC72A6NJI9 287 aa20.44■□□□□ 0.86
SS18-218ENST00000581021 TM4SF5O14894 197 aa20.44■□□□□ 0.86
SS18-218ENST00000581021 WNT9AO14904 365 aa20.44■□□□□ 0.86
SS18-218ENST00000581021 BCAT2O15382 392 aaPredicted RBP20.44■□□□□ 0.86
SS18-218ENST00000581021 SLC7A4O43246 635 aa20.44■□□□□ 0.86
SS18-218ENST00000581021 CD27P26842 260 aa20.44■□□□□ 0.86
SS18-218ENST00000581021 RGRP47804 291 aa20.44■□□□□ 0.86
SS18-218ENST00000581021 SFSWAPQ12872 951 aaKnown RBP20.44■□□□□ 0.86
SS18-218ENST00000581021 KRT81Q14533 505 aa20.44■□□□□ 0.86
SS18-218ENST00000581021 RAD9BQ6WBX8 426 aa20.44■□□□□ 0.86
SS18-218ENST00000581021 PARS2Q7L3T8 475 aaKnown RBP20.44■□□□□ 0.86
SS18-218ENST00000581021 TMEM139Q8IV31 216 aa20.44■□□□□ 0.86
SS18-218ENST00000581021 RYBPQ8N488 228 aaPredicted RBP20.44■□□□□ 0.86
SS18-218ENST00000581021 SUSD2Q9UGT4 822 aa20.44■□□□□ 0.86
SS18-218ENST00000581021 HYOU1Q9Y4L1 999 aa20.44■□□□□ 0.86
SS18-218ENST00000581021 SPTBN2O15020 2390 aa20.43■□□□□ 0.86
SS18-218ENST00000581021 DCDC2BA2VCK2 349 aa20.43■□□□□ 0.86
SS18-218ENST00000581021 KRIT1O00522 736 aa20.43■□□□□ 0.86
SS18-218ENST00000581021 SPINT1O43278 529 aa20.43■□□□□ 0.86
SS18-218ENST00000581021 LATO43561 262 aa20.43■□□□□ 0.86
SS18-218ENST00000581021 GJB3O75712 270 aa20.43■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms