RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 RPL21P46778 160 aaKnown RBP10.91□□□□□ -0.66
SS18-213ENST00000579640 TERF1P54274 439 aa10.91□□□□□ -0.66
SS18-213ENST00000579640 NSUN2Q08J23 767 aaKnown RBP eCLIP10.91□□□□□ -0.66
SS18-213ENST00000579640 SEMA5AQ13591 1074 aa10.91□□□□□ -0.66
SS18-213ENST00000579640 CYTH1Q15438 398 aa10.91□□□□□ -0.66
SS18-213ENST00000579640 SLC14A2Q15849 920 aa10.91□□□□□ -0.66
SS18-213ENST00000579640 IZUMO3Q5VZ72 239 aa10.91□□□□□ -0.66
SS18-213ENST00000579640 LEKR1Q6ZMV7 388 aa10.91□□□□□ -0.66
SS18-213ENST00000579640 HOOK3Q86VS8 718 aa10.91□□□□□ -0.66
SS18-213ENST00000579640 SH2D3CQ8N5H7 860 aa10.91□□□□□ -0.66
SS18-213ENST00000579640 EIF1ADQ8N9N8 165 aaKnown RBP10.91□□□□□ -0.66
SS18-213ENST00000579640 ATP11CQ8NB49 1132 aa10.91□□□□□ -0.66
SS18-213ENST00000579640 DPH5Q9H2P9 285 aa10.91□□□□□ -0.66
SS18-213ENST00000579640 EIF2B3Q9NR50 452 aaKnown RBP10.91□□□□□ -0.66
SS18-213ENST00000579640 PLA2G4CQ9UP65 541 aa10.91□□□□□ -0.66
SS18-213ENST00000579640 SORCS3Q9UPU3 1222 aa10.91□□□□□ -0.66
SS18-213ENST00000579640 AAR2Q9Y312 384 aaKnown RBP10.91□□□□□ -0.66
SS18-213ENST00000579640 SPTBN5Q9NRC6 3674 aaKnown RBP10.91□□□□□ -0.66
SS18-213ENST00000579640 PRRT4C9JH25 899 aa10.91□□□□□ -0.66
SS18-213ENST00000579640 E7EVH7 732 aa10.91□□□□□ -0.66
SS18-213ENST00000579640 NPC1O15118 1278 aa10.91□□□□□ -0.66
SS18-213ENST00000579640 ATP9BO43861 1147 aa10.91□□□□□ -0.66
SS18-213ENST00000579640 METTL18O95568 372 aa10.91□□□□□ -0.66
SS18-213ENST00000579640 MT-CO1P00395 513 aa10.91□□□□□ -0.66
SS18-213ENST00000579640 SRCP12931 536 aa10.91□□□□□ -0.66
SS18-213ENST00000579640 TPSB2P20231 275 aa10.91□□□□□ -0.66
SS18-213ENST00000579640 PSMB4P28070 264 aa10.91□□□□□ -0.66
SS18-213ENST00000579640 CTSOP43234 321 aaPredicted RBP10.91□□□□□ -0.66
SS18-213ENST00000579640 MAGEA6P43360 314 aa10.91□□□□□ -0.66
SS18-213ENST00000579640 TNFRSF4P43489 277 aa10.91□□□□□ -0.66
SS18-213ENST00000579640 MAPK8P45983 427 aa10.91□□□□□ -0.66
SS18-213ENST00000579640 SOX9P48436 509 aa10.91□□□□□ -0.66
SS18-213ENST00000579640 CSNK1DP48730 415 aa10.91□□□□□ -0.66
SS18-213ENST00000579640 NUMBP49757 651 aa10.91□□□□□ -0.66
SS18-213ENST00000579640 GALK1P51570 392 aa10.91□□□□□ -0.66
SS18-213ENST00000579640 RHOAP61586 193 aa10.91□□□□□ -0.66
SS18-213ENST00000579640 ST8SIA6P61647 398 aa10.91□□□□□ -0.66
SS18-213ENST00000579640 BASP1P80723 227 aaKnown RBP10.91□□□□□ -0.66
SS18-213ENST00000579640 ITKQ08881 620 aa10.91□□□□□ -0.66
SS18-213ENST00000579640 MORF4L2Q15014 288 aa10.91□□□□□ -0.66
SS18-213ENST00000579640 TPSAB1Q15661 275 aa10.91□□□□□ -0.66
SS18-213ENST00000579640 WDR93Q6P2C0 686 aa10.91□□□□□ -0.66
SS18-213ENST00000579640 KLHDC8BQ8IXV7 354 aa10.91□□□□□ -0.66
SS18-213ENST00000579640 PPIL6Q8IXY8 311 aa10.91□□□□□ -0.66
SS18-213ENST00000579640 PLPP6Q8IY26 295 aa10.91□□□□□ -0.66
SS18-213ENST00000579640 PCDH20Q8N6Y1 951 aaKnown RBP10.91□□□□□ -0.66
SS18-213ENST00000579640 TSEN2Q8NCE0 465 aaKnown RBP10.91□□□□□ -0.66
SS18-213ENST00000579640 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP10.91□□□□□ -0.666e-8■■■■□ 26.7
SS18-213ENST00000579640 IMP4Q96G21 291 aaKnown RBP10.91□□□□□ -0.66
SS18-213ENST00000579640 ZNF419Q96HQ0 510 aaPredicted RBP10.91□□□□□ -0.66
SS18-213ENST00000579640 ETNK1Q9HBU6 452 aa10.91□□□□□ -0.66
SS18-213ENST00000579640 HEBP1Q9NRV9 189 aa10.91□□□□□ -0.66
SS18-213ENST00000579640 VPS45Q9NRW7 570 aa10.91□□□□□ -0.66
SS18-213ENST00000579640 STARD13Q9Y3M8 1113 aa10.91□□□□□ -0.66
SS18-213ENST00000579640 FARP1Q9Y4F1 1045 aaPredicted RBP10.91□□□□□ -0.66
SS18-213ENST00000579640 TTLL3Q9Y4R7 772 aa10.91□□□□□ -0.66
SS18-213ENST00000579640 ACTL7AQ9Y615 435 aa10.91□□□□□ -0.66
SS18-213ENST00000579640 MYO10Q9HD67 2058 aa10.9□□□□□ -0.66
SS18-213ENST00000579640 NARSO43776 548 aaKnown RBP10.9□□□□□ -0.66
SS18-213ENST00000579640 IGSF6O95976 241 aa10.9□□□□□ -0.66
SS18-213ENST00000579640 GSRP00390 522 aa10.9□□□□□ -0.66
SS18-213ENST00000579640 CR2P20023 1033 aa10.9□□□□□ -0.66
SS18-213ENST00000579640 DRD1P21728 446 aa10.9□□□□□ -0.66
SS18-213ENST00000579640 STK19P49842 368 aaPredicted RBP10.9□□□□□ -0.66
SS18-213ENST00000579640 GEMP55040 296 aa10.9□□□□□ -0.66
SS18-213ENST00000579640 SNRPD1P62314 119 aaKnown RBP10.9□□□□□ -0.66
SS18-213ENST00000579640 CDK16Q00536 496 aa10.9□□□□□ -0.66
SS18-213ENST00000579640 MPP3Q13368 585 aa10.9□□□□□ -0.66
SS18-213ENST00000579640 KCNJ11Q14654 390 aa10.9□□□□□ -0.66
SS18-213ENST00000579640 RNASEH2BQ5TBB1 312 aaKnown RBP10.9□□□□□ -0.66
SS18-213ENST00000579640 HIBCHQ6NVY1 386 aaPredicted RBP10.9□□□□□ -0.66
SS18-213ENST00000579640 C22orf39Q6P5X5 142 aa10.9□□□□□ -0.66
SS18-213ENST00000579640 PGBD5Q8N414 524 aa10.9□□□□□ -0.66
SS18-213ENST00000579640 KCNV2Q8TDN2 545 aa10.9□□□□□ -0.66
SS18-213ENST00000579640 CPT1BQ92523 772 aa10.9□□□□□ -0.66
SS18-213ENST00000579640 RPL10LQ96L21 214 aaKnown RBP10.9□□□□□ -0.66
SS18-213ENST00000579640 MRGPRX3Q96LB0 322 aa10.9□□□□□ -0.66
SS18-213ENST00000579640 NUDCD1Q96RS6 583 aa10.9□□□□□ -0.66
SS18-213ENST00000579640 FRMD8Q9BZ67 464 aaPredicted RBP10.9□□□□□ -0.66
SS18-213ENST00000579640 GRHL1Q9NZI5 618 aa10.9□□□□□ -0.66
SS18-213ENST00000579640 LHX3Q9UBR4 397 aa10.9□□□□□ -0.66
SS18-213ENST00000579640 ANAPC5Q9UJX4 755 aa10.9□□□□□ -0.66
SS18-213ENST00000579640 SHOC2Q9UQ13 582 aa10.9□□□□□ -0.66
SS18-213ENST00000579640 FCF1Q9Y324 198 aaKnown RBP10.9□□□□□ -0.66
SS18-213ENST00000579640 MYO18AQ92614 2054 aaKnown RBP10.9□□□□□ -0.67
SS18-213ENST00000579640 ESYT3A0FGR9 886 aa10.89□□□□□ -0.67
SS18-213ENST00000579640 MAN2B1O00754 1011 aa10.89□□□□□ -0.67
SS18-213ENST00000579640 MUSKO15146 869 aa10.89□□□□□ -0.67
SS18-213ENST00000579640 INSIG1O15503 277 aa10.89□□□□□ -0.67
SS18-213ENST00000579640 SMAD6O43541 496 aaKnown RBP10.89□□□□□ -0.67
SS18-213ENST00000579640 LMAN1P49257 510 aa10.89□□□□□ -0.67
SS18-213ENST00000579640 ITGA8P53708 1063 aa10.89□□□□□ -0.67
SS18-213ENST00000579640 MAXP61244 160 aa10.89□□□□□ -0.67
SS18-213ENST00000579640 AP1S1P61966 158 aa10.89□□□□□ -0.67
SS18-213ENST00000579640 SARNPP82979 210 aaKnown RBP10.89□□□□□ -0.67
SS18-213ENST00000579640 MESP2Q0VG99 397 aa10.89□□□□□ -0.67
SS18-213ENST00000579640 GRSF1Q12849 480 aaKnown RBP eCLIP10.89□□□□□ -0.67
SS18-213ENST00000579640 DLG2Q15700 870 aa10.89□□□□□ -0.67
SS18-213ENST00000579640 ELF2Q15723 593 aa10.89□□□□□ -0.67
SS18-213ENST00000579640 PTPRNQ16849 979 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms