RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 EPB41L2O43491 1005 aaKnown RBP16.57■□□□□ 0.24
VPS53-218ENST00000575207 IGLV3-27P01718 113 aa16.57■□□□□ 0.24
VPS53-218ENST00000575207 CTSLP07711 333 aa16.57■□□□□ 0.24
VPS53-218ENST00000575207 THOP1P52888 689 aa16.57■□□□□ 0.24
VPS53-218ENST00000575207 ALCAMQ13740 583 aa16.57■□□□□ 0.24
VPS53-218ENST00000575207 PSMD6Q15008 389 aa16.57■□□□□ 0.24
VPS53-218ENST00000575207 NR6A1Q15406 480 aa16.57■□□□□ 0.24
VPS53-218ENST00000575207 ZRSR2Q15696 482 aaKnown RBP16.57■□□□□ 0.24
VPS53-218ENST00000575207 MAP9Q49MG5 647 aa16.57■□□□□ 0.24
VPS53-218ENST00000575207 DIEXFQ68CQ4 756 aaKnown RBP16.57■□□□□ 0.24
VPS53-218ENST00000575207 PM20D1Q6GTS8 502 aa16.57■□□□□ 0.24
VPS53-218ENST00000575207 NADSYN1Q6IA69 706 aa16.57■□□□□ 0.24
VPS53-218ENST00000575207 BHLHA9Q7RTU4 235 aa16.57■□□□□ 0.24
VPS53-218ENST00000575207 APLFQ8IW19 511 aaPredicted RBP16.57■□□□□ 0.24
VPS53-218ENST00000575207 Q8NA96 180 aa16.57■□□□□ 0.24
VPS53-218ENST00000575207 FBXO18Q8NFZ0 1043 aa16.57■□□□□ 0.24
VPS53-218ENST00000575207 ERCC4Q92889 916 aaPredicted RBP16.57■□□□□ 0.24
VPS53-218ENST00000575207 MFRPQ9BY79 579 aa16.57■□□□□ 0.24
VPS53-218ENST00000575207 RDH14Q9HBH5 336 aa16.57■□□□□ 0.24
VPS53-218ENST00000575207 OLFML3Q9NRN5 406 aa16.57■□□□□ 0.24
VPS53-218ENST00000575207 OAS3Q9Y6K5 1087 aaKnown RBP16.57■□□□□ 0.24
VPS53-218ENST00000575207 PRSS44E7EML9 344 aa16.56■□□□□ 0.24
VPS53-218ENST00000575207 MSI1O43347 362 aaKnown RBP16.56■□□□□ 0.24
VPS53-218ENST00000575207 KIF20AO95235 890 aa16.56■□□□□ 0.24
VPS53-218ENST00000575207 GAP43P17677 238 aa16.56■□□□□ 0.24
VPS53-218ENST00000575207 TRIM21P19474 475 aaKnown RBP16.56■□□□□ 0.24
VPS53-218ENST00000575207 HDAC4P56524 1084 aa16.56■□□□□ 0.24
VPS53-218ENST00000575207 RNASE9P60153 205 aaKnown RBP16.56■□□□□ 0.24
VPS53-218ENST00000575207 PPARDQ03181 441 aa16.56■□□□□ 0.24
VPS53-218ENST00000575207 SLC12A1Q13621 1099 aa16.56■□□□□ 0.24
VPS53-218ENST00000575207 SNRNP35Q16560 246 aaKnown RBP16.56■□□□□ 0.24
VPS53-218ENST00000575207 CLPPQ16740 277 aaPredicted RBP16.56■□□□□ 0.24
VPS53-218ENST00000575207 DCAF12Q5T6F0 453 aa16.56■□□□□ 0.24
VPS53-218ENST00000575207 Q6ZVU0 165 aa16.56■□□□□ 0.24
VPS53-218ENST00000575207 ERN2Q76MJ5 926 aaKnown RBP16.56■□□□□ 0.24
VPS53-218ENST00000575207 SKAP1Q86WV1 359 aa16.56■□□□□ 0.24
VPS53-218ENST00000575207 UNC45BQ8IWX7 931 aa16.56■□□□□ 0.24
VPS53-218ENST00000575207 KCTD13Q8WZ19 329 aa16.56■□□□□ 0.24
VPS53-218ENST00000575207 LARP4BQ92615 738 aaKnown RBP16.56■□□□□ 0.24
VPS53-218ENST00000575207 CCDC127Q96BQ5 260 aa16.56■□□□□ 0.24
VPS53-218ENST00000575207 FEM1CQ96JP0 617 aa16.56■□□□□ 0.24
VPS53-218ENST00000575207 AK8Q96MA6 479 aa16.56■□□□□ 0.24
VPS53-218ENST00000575207 TEFMQ96QE5 360 aaKnown RBP16.56■□□□□ 0.24
VPS53-218ENST00000575207 TWNKQ96RR1 684 aa16.56■□□□□ 0.24
VPS53-218ENST00000575207 HDAC8Q9BY41 377 aa16.56■□□□□ 0.24
VPS53-218ENST00000575207 UBXN6Q9BZV1 441 aa16.56■□□□□ 0.24
VPS53-218ENST00000575207 MLXIPLQ9NP71 852 aa16.56■□□□□ 0.24
VPS53-218ENST00000575207 SLC39A1Q9NY26 324 aa16.56■□□□□ 0.24
VPS53-218ENST00000575207 RRN3Q9NYV6 651 aa16.56■□□□□ 0.24
VPS53-218ENST00000575207 PCDHB3Q9Y5E6 796 aa16.56■□□□□ 0.24
VPS53-218ENST00000575207 IGHV5-10-1A0A0J9YXX1 117 aa16.55■□□□□ 0.24
VPS53-218ENST00000575207 B4E171 279 aa16.55■□□□□ 0.24
VPS53-218ENST00000575207 KPNA3O00505 521 aaPredicted RBP16.55■□□□□ 0.24
VPS53-218ENST00000575207 FURINP09958 794 aa16.55■□□□□ 0.24
VPS53-218ENST00000575207 UBA7P41226 1012 aa16.55■□□□□ 0.24
VPS53-218ENST00000575207 TSPAN7P41732 249 aa16.55■□□□□ 0.24
VPS53-218ENST00000575207 RAB15P59190 212 aa16.55■□□□□ 0.24
VPS53-218ENST00000575207 B4GALNT1Q00973 533 aa16.55■□□□□ 0.24
VPS53-218ENST00000575207 TRA2AQ13595 282 aaKnown RBP eCLIP16.55■□□□□ 0.24
VPS53-218ENST00000575207 SMTNL2Q2TAL5 461 aa16.55■□□□□ 0.24
VPS53-218ENST00000575207 ZSCAN30Q86W11 494 aa16.55■□□□□ 0.24
VPS53-218ENST00000575207 AGBL5Q8NDL9 886 aa16.55■□□□□ 0.24
VPS53-218ENST00000575207 DENND6BQ8NEG7 585 aa16.55■□□□□ 0.24
VPS53-218ENST00000575207 TMIEQ8NEW7 156 aa16.55■□□□□ 0.24
VPS53-218ENST00000575207 RNF139Q8WU17 664 aa16.55■□□□□ 0.24
VPS53-218ENST00000575207 DDX50Q9BQ39 737 aaKnown RBP16.55■□□□□ 0.24
VPS53-218ENST00000575207 C1QTNF2Q9BXJ5 285 aa16.55■□□□□ 0.24
VPS53-218ENST00000575207 EDEM3Q9BZQ6 932 aa16.55■□□□□ 0.24
VPS53-218ENST00000575207 MRPS18BQ9Y676 258 aaKnown RBP16.55■□□□□ 0.24
VPS53-218ENST00000575207 ZBED1O96006 694 aa16.54■□□□□ 0.24
VPS53-218ENST00000575207 DRD2P14416 443 aa16.54■□□□□ 0.24
VPS53-218ENST00000575207 BLKP51451 505 aa16.54■□□□□ 0.24
VPS53-218ENST00000575207 PGDP52209 483 aa16.54■□□□□ 0.24
VPS53-218ENST00000575207 PLK1P53350 603 aa16.54■□□□□ 0.24
VPS53-218ENST00000575207 YPEL5P62699 121 aa16.54■□□□□ 0.24
VPS53-218ENST00000575207 CYP24A1Q07973 514 aa16.54■□□□□ 0.24
VPS53-218ENST00000575207 DLG2Q15700 870 aa16.54■□□□□ 0.24
VPS53-218ENST00000575207 ACCSLQ4AC99 568 aa16.54■□□□□ 0.24
VPS53-218ENST00000575207 MS4A13Q5J8X5 152 aa16.54■□□□□ 0.24
VPS53-218ENST00000575207 PAPD7Q5XG87 772 aaKnown RBP16.54■□□□□ 0.24
VPS53-218ENST00000575207 JMJD6Q6NYC1 403 aaPredicted RBP16.54■□□□□ 0.24
VPS53-218ENST00000575207 OGFOD3Q6PK18 319 aa16.54■□□□□ 0.24
VPS53-218ENST00000575207 MACC1Q6ZN28 852 aa16.54■□□□□ 0.24
VPS53-218ENST00000575207 GKN2Q86XP6 184 aa16.54■□□□□ 0.24
VPS53-218ENST00000575207 CFAP52Q8N1V2 620 aa16.54■□□□□ 0.24
VPS53-218ENST00000575207 RASSF8Q8NHQ8 419 aa16.54■□□□□ 0.24
VPS53-218ENST00000575207 ASB12Q8WXK4 309 aa16.54■□□□□ 0.24
VPS53-218ENST00000575207 ELMO3Q96BJ8 720 aa16.54■□□□□ 0.24
VPS53-218ENST00000575207 FGFBP2Q9BYJ0 223 aa16.54■□□□□ 0.24
VPS53-218ENST00000575207 TRIT1Q9H3H1 467 aaKnown RBP16.54■□□□□ 0.24
VPS53-218ENST00000575207 DYRK4Q9NR20 520 aa16.54■□□□□ 0.24
VPS53-218ENST00000575207 LRIT1Q9P2V4 623 aa16.54■□□□□ 0.24
VPS53-218ENST00000575207 ANKUB1A6NFN9 424 aa16.53■□□□□ 0.24
VPS53-218ENST00000575207 B4GAT1O43505 415 aa16.53■□□□□ 0.24
VPS53-218ENST00000575207 NUDT21O43809 227 aaKnown RBP16.53■□□□□ 0.24
VPS53-218ENST00000575207 PHACTR2O75167 634 aa16.53■□□□□ 0.24
VPS53-218ENST00000575207 PPP6R2O75170 966 aa16.53■□□□□ 0.24
VPS53-218ENST00000575207 DNAJB5O75953 348 aa16.53■□□□□ 0.24
VPS53-218ENST00000575207 NADKO95544 446 aaPredicted RBP16.53■□□□□ 0.24
VPS53-218ENST00000575207 P4HA1P13674 534 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms