RNA–Protein interactions for RNA: ENST00000573936.5

CHD3-216, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 749 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-216ENST00000573936 SPDYCQ5MJ68 293 aa11.23□□□□□ -0.61
CHD3-216ENST00000573936 Q6ZVU0 165 aa11.23□□□□□ -0.61
CHD3-216ENST00000573936 USP30Q70CQ3 517 aa11.23□□□□□ -0.61
CHD3-216ENST00000573936 KBTBD6Q86V97 674 aa11.23□□□□□ -0.61
CHD3-216ENST00000573936 ARHGAP12Q8IWW6 846 aa11.23□□□□□ -0.61
CHD3-216ENST00000573936 KATNAL2Q8IYT4 538 aa11.23□□□□□ -0.61
CHD3-216ENST00000573936 RCOR2Q8IZ40 523 aa11.23□□□□□ -0.61
CHD3-216ENST00000573936 STK40Q8N2I9 435 aa11.23□□□□□ -0.61
CHD3-216ENST00000573936 PCDH19Q8TAB3 1148 aa11.23□□□□□ -0.61
CHD3-216ENST00000573936 TRAF3IP1Q8TDR0 691 aaPredicted RBP11.23□□□□□ -0.61
CHD3-216ENST00000573936 NSMCE1Q8WV22 266 aa11.23□□□□□ -0.61
CHD3-216ENST00000573936 RBM41Q96IZ5 413 aaKnown RBP11.23□□□□□ -0.61
CHD3-216ENST00000573936 ZC3H10Q96K80 434 aaKnown RBP11.23□□□□□ -0.61
CHD3-216ENST00000573936 ZNF599Q96NL3 588 aa11.23□□□□□ -0.61
CHD3-216ENST00000573936 FAM129BQ96TA1 746 aa11.23□□□□□ -0.61
CHD3-216ENST00000573936 MTG2Q9H4K7 406 aa11.23□□□□□ -0.61
CHD3-216ENST00000573936 SP110Q9HB58 689 aa11.23□□□□□ -0.61
CHD3-216ENST00000573936 ETNK2Q9NVF9 386 aa11.23□□□□□ -0.61
CHD3-216ENST00000573936 KLHL11Q9NVR0 708 aa11.23□□□□□ -0.61
CHD3-216ENST00000573936 HYOU1Q9Y4L1 999 aa11.23□□□□□ -0.61
CHD3-216ENST00000573936 MUC22E2RYF6 1773 aaPredicted RBP11.23□□□□□ -0.61
CHD3-216ENST00000573936 IGHV1OR15-9A0A0B4J2B8 117 aa11.22□□□□□ -0.61
CHD3-216ENST00000573936 C3orf70A6NLC5 250 aaPredicted RBP11.22□□□□□ -0.61
CHD3-216ENST00000573936 MIF4GDA9UHW6 222 aaKnown RBP11.22□□□□□ -0.61
CHD3-216ENST00000573936 BNIP3LO60238 219 aa11.22□□□□□ -0.61
CHD3-216ENST00000573936 NDUFS2O75306 463 aa11.22□□□□□ -0.61
CHD3-216ENST00000573936 GSRP00390 522 aa11.22□□□□□ -0.61
CHD3-216ENST00000573936 IL1BP01584 269 aa11.22□□□□□ -0.61
CHD3-216ENST00000573936 IGLV3-19P01714 112 aa11.22□□□□□ -0.61
CHD3-216ENST00000573936 PRNPP04156 253 aa11.22□□□□□ -0.61
CHD3-216ENST00000573936 VAV1P15498 845 aa11.22□□□□□ -0.61
CHD3-216ENST00000573936 MX2P20592 715 aa11.22□□□□□ -0.61
CHD3-216ENST00000573936 CTNNA2P26232 953 aa11.22□□□□□ -0.61
CHD3-216ENST00000573936 CD6P30203 668 aa11.22□□□□□ -0.61
CHD3-216ENST00000573936 CHRNA3P32297 505 aa11.22□□□□□ -0.61
CHD3-216ENST00000573936 SLC8A1P32418 973 aa11.22□□□□□ -0.61
CHD3-216ENST00000573936 CETN2P41208 172 aa11.22□□□□□ -0.61
CHD3-216ENST00000573936 DNA2P51530 1060 aa11.22□□□□□ -0.61
CHD3-216ENST00000573936 TPMTP51580 245 aa11.22□□□□□ -0.61
CHD3-216ENST00000573936 RENBPP51606 427 aa11.22□□□□□ -0.61
CHD3-216ENST00000573936 COPS2P61201 443 aa11.22□□□□□ -0.61
CHD3-216ENST00000573936 TFDP2Q14188 446 aa11.22□□□□□ -0.61
CHD3-216ENST00000573936 CST6Q15828 149 aa11.22□□□□□ -0.61
CHD3-216ENST00000573936 NCBP2-AS2Q69YL0 99 aa11.22□□□□□ -0.61
CHD3-216ENST00000573936 TIGD7Q6NT04 549 aaPredicted RBP11.22□□□□□ -0.61
CHD3-216ENST00000573936 BZW1Q7L1Q6 419 aaKnown RBP11.22□□□□□ -0.61
CHD3-216ENST00000573936 LPCAT2Q7L5N7 544 aa11.22□□□□□ -0.61
CHD3-216ENST00000573936 RFX6Q8HWS3 928 aa11.22□□□□□ -0.61
CHD3-216ENST00000573936 MMAAQ8IVH4 418 aaKnown RBP11.22□□□□□ -0.61
CHD3-216ENST00000573936 BBS5Q8N3I7 341 aa11.22□□□□□ -0.61
CHD3-216ENST00000573936 ATPAF2Q8N5M1 289 aa11.22□□□□□ -0.61
CHD3-216ENST00000573936 FAM160A2Q8N612 972 aaPredicted RBP11.22□□□□□ -0.61
CHD3-216ENST00000573936 NPWQ8N729 165 aa11.22□□□□□ -0.61
CHD3-216ENST00000573936 UBL4BQ8N7F7 174 aa11.22□□□□□ -0.61
CHD3-216ENST00000573936 LRRC57Q8N9N7 239 aa11.22□□□□□ -0.61
CHD3-216ENST00000573936 TMIEQ8NEW7 156 aa11.22□□□□□ -0.61
CHD3-216ENST00000573936 OR2A12Q8NGT7 310 aa11.22□□□□□ -0.61
CHD3-216ENST00000573936 EXD1Q8NHP7 514 aa11.22□□□□□ -0.61
CHD3-216ENST00000573936 GANCQ8TET4 914 aa11.22□□□□□ -0.61
CHD3-216ENST00000573936 RLN3Q8WXF3 142 aa11.22□□□□□ -0.61
CHD3-216ENST00000573936 RNF25Q96BH1 459 aaPredicted RBP11.22□□□□□ -0.61
CHD3-216ENST00000573936 LRIG1Q96JA1 1093 aa11.22□□□□□ -0.61
CHD3-216ENST00000573936 LOXL4Q96JB6 756 aa11.22□□□□□ -0.61
CHD3-216ENST00000573936 HEPHQ9BQS7 1158 aa11.22□□□□□ -0.61
CHD3-216ENST00000573936 SLC6A17Q9H1V8 727 aa11.22□□□□□ -0.61
CHD3-216ENST00000573936 PABPC3Q9H361 631 aaKnown RBP11.22□□□□□ -0.61
CHD3-216ENST00000573936 PDFQ9HBH1 243 aa11.22□□□□□ -0.61
CHD3-216ENST00000573936 HAUS2Q9NVX0 235 aa11.22□□□□□ -0.61
CHD3-216ENST00000573936 IL36AQ9UHA7 158 aa11.22□□□□□ -0.61
CHD3-216ENST00000573936 IPO11Q9UI26 975 aaKnown RBP11.22□□□□□ -0.61
CHD3-216ENST00000573936 GUCA1BQ9UMX6 200 aa11.22□□□□□ -0.61
CHD3-216ENST00000573936 CYP8B1Q9UNU6 501 aa11.22□□□□□ -0.61
CHD3-216ENST00000573936 FCF1Q9Y324 198 aaKnown RBP11.22□□□□□ -0.61
CHD3-216ENST00000573936 PCDHA3Q9Y5H8 950 aa11.22□□□□□ -0.61
CHD3-216ENST00000573936 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.22□□□□□ -0.61
CHD3-216ENST00000573936 ATRXP46100 2492 aa11.21□□□□□ -0.61
CHD3-216ENST00000573936 GRID2IPA4D2P6 1211 aa11.21□□□□□ -0.61
CHD3-216ENST00000573936 J3KR12 359 aa11.21□□□□□ -0.61
CHD3-216ENST00000573936 APOL1O14791 398 aa11.21□□□□□ -0.61
CHD3-216ENST00000573936 MID1O15344 667 aa11.21□□□□□ -0.61
CHD3-216ENST00000573936 PALMO75781 387 aa11.21□□□□□ -0.61
CHD3-216ENST00000573936 TMCC1O94876 653 aa11.21□□□□□ -0.61
CHD3-216ENST00000573936 POP4O95707 220 aaKnown RBP11.21□□□□□ -0.61
CHD3-216ENST00000573936 IGSF6O95976 241 aa11.21□□□□□ -0.61
CHD3-216ENST00000573936 CTNNA1P35221 906 aaKnown RBP11.21□□□□□ -0.61
CHD3-216ENST00000573936 PSMD8P48556 350 aa11.21□□□□□ -0.61
CHD3-216ENST00000573936 RWDD2BP57060 319 aa11.21□□□□□ -0.61
CHD3-216ENST00000573936 RHOAP61586 193 aa11.21□□□□□ -0.61
CHD3-216ENST00000573936 GRM3Q14832 879 aa11.21□□□□□ -0.61
CHD3-216ENST00000573936 CCDC6Q16204 474 aa11.21□□□□□ -0.61
CHD3-216ENST00000573936 PLK5Q496M5 336 aa11.21□□□□□ -0.61
CHD3-216ENST00000573936 TFDP3Q5H9I0 405 aa11.21□□□□□ -0.61
CHD3-216ENST00000573936 SLC9A4Q6AI14 798 aa11.21□□□□□ -0.61
CHD3-216ENST00000573936 MFSD7Q6UXD7 560 aa11.21□□□□□ -0.61
CHD3-216ENST00000573936 LEKR1Q6ZMV7 388 aa11.21□□□□□ -0.61
CHD3-216ENST00000573936 PEX26Q7Z412 305 aa11.21□□□□□ -0.61
CHD3-216ENST00000573936 NT5DC3Q86UY8 548 aa11.21□□□□□ -0.61
CHD3-216ENST00000573936 PQLC3Q8N755 202 aa11.21□□□□□ -0.61
CHD3-216ENST00000573936 OR2AP1Q8NGE2 309 aa11.21□□□□□ -0.61
CHD3-216ENST00000573936 PIP4K2CQ8TBX8 421 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms