RNA–Protein interactions for RNA: ENST00000571643.5

CDC27-213, Transcript of cell division cycle 27, human

TSL 3

Gene CDC27, Length 716 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDC27-213	ENST00000571643	RBM44	Q6ZP01	1051 aa	Known RBP	3.9	□□□□□ -1.79
CDC27-213	ENST00000571643	C9orf47	Q6ZRZ4	202 aa		3.9	□□□□□ -1.79
CDC27-213	ENST00000571643	COLCA1	Q6ZS62	124 aa		3.9	□□□□□ -1.79
CDC27-213	ENST00000571643	G2E3	Q7L622	706 aa		3.9	□□□□□ -1.79
CDC27-213	ENST00000571643	MMP21	Q8N119	569 aa		3.9	□□□□□ -1.79
CDC27-213	ENST00000571643	OR8H2	Q8N162	312 aa		3.9	□□□□□ -1.79
CDC27-213	ENST00000571643	NKAIN3	Q8N8D7	197 aa		3.9	□□□□□ -1.79
CDC27-213	ENST00000571643	AKAP1	Q92667	903 aa	Known RBP eCLIP	3.9	□□□□□ -1.79
CDC27-213	ENST00000571643	KAT2B	Q92831	832 aa		3.9	□□□□□ -1.79
CDC27-213	ENST00000571643	TRIM63	Q969Q1	353 aa		3.9	□□□□□ -1.79
CDC27-213	ENST00000571643	TRMT61A	Q96FX7	289 aa	Known RBP	3.9	□□□□□ -1.79
CDC27-213	ENST00000571643	LYZL4	Q96KX0	146 aa		3.9	□□□□□ -1.79
CDC27-213	ENST00000571643	MARK4	Q96L34	752 aa		3.9	□□□□□ -1.79
CDC27-213	ENST00000571643	NLRP4	Q96MN2	994 aa		3.9	□□□□□ -1.79
CDC27-213	ENST00000571643	EYA3	Q99504	573 aa		3.9	□□□□□ -1.79
CDC27-213	ENST00000571643	TRIM2	Q9C040	744 aa		3.9	□□□□□ -1.79
CDC27-213	ENST00000571643	ANKRD2	Q9GZV1	360 aa		3.9	□□□□□ -1.79
CDC27-213	ENST00000571643	FAM234A	Q9H0X4	552 aa		3.9	□□□□□ -1.79
CDC27-213	ENST00000571643	SAP30L	Q9HAJ7	183 aa		3.9	□□□□□ -1.79
CDC27-213	ENST00000571643	SEMA4B	Q9NPR2	832 aa	Predicted RBP	3.9	□□□□□ -1.79
CDC27-213	ENST00000571643	SH3GLB2	Q9NR46	395 aa		3.9	□□□□□ -1.79
CDC27-213	ENST00000571643	SMC4	Q9NTJ3	1288 aa		3.9	□□□□□ -1.79
CDC27-213	ENST00000571643	TMEM45A	Q9NWC5	275 aa		3.9	□□□□□ -1.79
CDC27-213	ENST00000571643	CORO2B	Q9UQ03	480 aa		3.9	□□□□□ -1.79
CDC27-213	ENST00000571643	HEMK1	Q9Y5R4	338 aa	Predicted RBP	3.9	□□□□□ -1.79
CDC27-213	ENST00000571643	TTC3	P53804	2025 aa		3.9	□□□□□ -1.79
CDC27-213	ENST00000571643	SCN4A	P35499	1836 aa		3.89	□□□□□ -1.79
CDC27-213	ENST00000571643	IGKV2D-30	A0A075B6S6	120 aa		3.89	□□□□□ -1.79
CDC27-213	ENST00000571643	IGLV5-39	A0A0G2JS06	123 aa		3.89	□□□□□ -1.79
CDC27-213	ENST00000571643	ABHD14A-ACY1	A0A1B0GW23	586 aa		3.89	□□□□□ -1.79
CDC27-213	ENST00000571643		F8W8V4	182 aa		3.89	□□□□□ -1.79
CDC27-213	ENST00000571643	PQBP1	O60828	265 aa	Known RBP	3.89	□□□□□ -1.79
CDC27-213	ENST00000571643	SYF2	O95926	243 aa	Known RBP	3.89	□□□□□ -1.79
CDC27-213	ENST00000571643	MBP	P02686	304 aa	Predicted RBP	3.89	□□□□□ -1.79
CDC27-213	ENST00000571643	SETSIP	P0DME0	302 aa		3.89	□□□□□ -1.79
CDC27-213	ENST00000571643	HSD3B1	P14060	373 aa		3.89	□□□□□ -1.79
CDC27-213	ENST00000571643	VEGFA	P15692	232 aa	Predicted RBP	3.89	□□□□□ -1.79
CDC27-213	ENST00000571643	DRD1	P21728	446 aa		3.89	□□□□□ -1.79
CDC27-213	ENST00000571643	MST1	P26927	711 aa		3.89	□□□□□ -1.79
CDC27-213	ENST00000571643	CCKBR	P32239	447 aa		3.89	□□□□□ -1.79
CDC27-213	ENST00000571643	IGHMBP2	P38935	993 aa	Known RBP	3.89	□□□□□ -1.79
CDC27-213	ENST00000571643	TSPAN7	P41732	249 aa		3.89	□□□□□ -1.79
CDC27-213	ENST00000571643	PIK3CA	P42336	1068 aa		3.89	□□□□□ -1.79
CDC27-213	ENST00000571643	KCNJ4	P48050	445 aa		3.89	□□□□□ -1.79
CDC27-213	ENST00000571643	RXRG	P48443	463 aa		3.89	□□□□□ -1.79
CDC27-213	ENST00000571643	PRKG2	Q13237	762 aa		3.89	□□□□□ -1.79
CDC27-213	ENST00000571643	IFIT5	Q13325	482 aa	Known RBP	3.89	□□□□□ -1.79
CDC27-213	ENST00000571643	CBFB	Q13951	182 aa		3.89	□□□□□ -1.79
CDC27-213	ENST00000571643	TNIP1	Q15025	636 aa		3.89	□□□□□ -1.79
CDC27-213	ENST00000571643	PDCD2	Q16342	344 aa	Predicted RBP	3.89	□□□□□ -1.79
CDC27-213	ENST00000571643	RABL6	Q3YEC7	729 aa	Predicted RBP	3.89	□□□□□ -1.79
CDC27-213	ENST00000571643	LEXM	Q3ZCV2	418 aa		3.89	□□□□□ -1.79
CDC27-213	ENST00000571643	MIDN	Q504T8	468 aa		3.89	□□□□□ -1.79
CDC27-213	ENST00000571643	ARMC3	Q5W041	872 aa		3.89	□□□□□ -1.79
CDC27-213	ENST00000571643	C16orf54	Q6UWD8	224 aa		3.89	□□□□□ -1.79
CDC27-213	ENST00000571643	C15orf52	Q6ZUT6	534 aa	Known RBP	3.89	□□□□□ -1.79
CDC27-213	ENST00000571643	MYLK4	Q86YV6	388 aa	Predicted RBP	3.89	□□□□□ -1.79
CDC27-213	ENST00000571643	ANKRD18A	Q8IVF6	992 aa		3.89	□□□□□ -1.79
CDC27-213	ENST00000571643	FAM186B	Q8IYM0	893 aa		3.89	□□□□□ -1.79
CDC27-213	ENST00000571643	GPC2	Q8N158	579 aa		3.89	□□□□□ -1.79
CDC27-213	ENST00000571643	NKAP	Q8N5F7	415 aa	Known RBP	3.89	□□□□□ -1.79
CDC27-213	ENST00000571643	SPATA5	Q8NB90	893 aa		3.89	□□□□□ -1.79
CDC27-213	ENST00000571643	NAXE	Q8NCW5	288 aa		3.89	□□□□□ -1.79
CDC27-213	ENST00000571643	ACRBP	Q8NEB7	543 aa		3.89	□□□□□ -1.79
CDC27-213	ENST00000571643	OR52L2P	Q8NGH6	319 aa		3.89	□□□□□ -1.79
CDC27-213	ENST00000571643	TIFA	Q96CG3	184 aa		3.89	□□□□□ -1.79
CDC27-213	ENST00000571643	SNX27	Q96L92	541 aa		3.89	□□□□□ -1.79
CDC27-213	ENST00000571643	EIF3C	Q99613	913 aa	Known RBP	3.89	□□□□□ -1.79
CDC27-213	ENST00000571643	NUDT22	Q9BRQ3	303 aa		3.89	□□□□□ -1.79
CDC27-213	ENST00000571643	TSPY26P	Q9H489	355 aa		3.89	□□□□□ -1.79
CDC27-213	ENST00000571643	DECR2	Q9NUI1	292 aa		3.89	□□□□□ -1.79
CDC27-213	ENST00000571643	PHTF1	Q9UMS5	762 aa		3.89	□□□□□ -1.79
CDC27-213	ENST00000571643	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	3.89	□□□□□ -1.79
CDC27-213	ENST00000571643	TNRC6C	Q9HCJ0	1690 aa	Known RBP	3.89	□□□□□ -1.79
CDC27-213	ENST00000571643	ABCC4	O15439	1325 aa		3.89	□□□□□ -1.79
CDC27-213	ENST00000571643	ZNF609	O15014	1411 aa		3.88	□□□□□ -1.79
CDC27-213	ENST00000571643	CACNA1S	Q13698	1873 aa		3.88	□□□□□ -1.79
CDC27-213	ENST00000571643	WDR90	Q96KV7	1748 aa		3.88	□□□□□ -1.79
CDC27-213	ENST00000571643	ANKRD18B	A2A2Z9	1011 aa		3.88	□□□□□ -1.79
CDC27-213	ENST00000571643	GTPBP10	A4D1E9	387 aa	Known RBP	3.88	□□□□□ -1.79
CDC27-213	ENST00000571643		J3KRW8	73 aa		3.88	□□□□□ -1.79
CDC27-213	ENST00000571643	RRH	O14718	337 aa		3.88	□□□□□ -1.79
CDC27-213	ENST00000571643	PRPF4	O43172	522 aa	Known RBP eCLIP	3.88	□□□□□ -1.79
CDC27-213	ENST00000571643	TLX3	O43711	291 aa	Predicted RBP	3.88	□□□□□ -1.79
CDC27-213	ENST00000571643	CBFA2T3	O75081	653 aa		3.88	□□□□□ -1.79
CDC27-213	ENST00000571643	TOMM70	O94826	608 aa		3.88	□□□□□ -1.79
CDC27-213	ENST00000571643	SGPL1	O95470	568 aa		3.88	□□□□□ -1.79
CDC27-213	ENST00000571643	CRYAB	P02511	175 aa	Known RBP	3.88	□□□□□ -1.79
CDC27-213	ENST00000571643	AR	P10275	920 aa		3.88	□□□□□ -1.79
CDC27-213	ENST00000571643	FGFR2	P21802	821 aa		3.88	□□□□□ -1.79
CDC27-213	ENST00000571643	TBXAS1	P24557	533 aa	Predicted RBP	3.88	□□□□□ -1.79
CDC27-213	ENST00000571643	RPS12	P25398	132 aa	Known RBP	3.88	□□□□□ -1.79
CDC27-213	ENST00000571643	NDUFS1	P28331	727 aa		3.88	□□□□□ -1.79
CDC27-213	ENST00000571643	CCKAR	P32238	428 aa		3.88	□□□□□ -1.79
CDC27-213	ENST00000571643	SLC8A1	P32418	973 aa		3.88	□□□□□ -1.79
CDC27-213	ENST00000571643	HOXD12	P35452	270 aa		3.88	□□□□□ -1.79
CDC27-213	ENST00000571643	DEK	P35659	375 aa	Known RBP	3.88	□□□□□ -1.79
CDC27-213	ENST00000571643	PBX1	P40424	430 aa		3.88	□□□□□ -1.79
CDC27-213	ENST00000571643	GSTM5	P46439	218 aa		3.88	□□□□□ -1.79
CDC27-213	ENST00000571643	VPS41	P49754	854 aa		3.88	□□□□□ -1.79

Retrieved 100 of 20,778 RNA–protein pairs in 22 ms