RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 FZD10Q9ULW2 581 aa14.69□□□□□ -0.06
VPS35-210ENST00000568784 QSER1Q2KHR3 1735 aa14.69□□□□□ -0.06
VPS35-210ENST00000568784 HEATR9A2RTY3 570 aa14.69□□□□□ -0.06
VPS35-210ENST00000568784 E7ENX8 843 aa14.69□□□□□ -0.06
VPS35-210ENST00000568784 MATN2O00339 956 aa14.69□□□□□ -0.06
VPS35-210ENST00000568784 MRASO14807 208 aa14.69□□□□□ -0.06
VPS35-210ENST00000568784 TRMUO75648 421 aaKnown RBP14.69□□□□□ -0.06
VPS35-210ENST00000568784 CCNA1P78396 465 aa14.69□□□□□ -0.06
VPS35-210ENST00000568784 SNAPC2Q13487 334 aa14.69□□□□□ -0.06
VPS35-210ENST00000568784 SLC25A52Q3SY17 297 aa14.69□□□□□ -0.06
VPS35-210ENST00000568784 OGFRL1Q5TC84 451 aaPredicted RBP14.69□□□□□ -0.06
VPS35-210ENST00000568784 RMND5BQ96G75 393 aaPredicted RBP14.69□□□□□ -0.06
VPS35-210ENST00000568784 KLHL32Q96NJ5 620 aa14.69□□□□□ -0.06
VPS35-210ENST00000568784 MRPS26Q9BYN8 205 aaKnown RBP14.69□□□□□ -0.06
VPS35-210ENST00000568784 WDCPQ9H6R7 721 aa14.69□□□□□ -0.06
VPS35-210ENST00000568784 CAMSAP3Q9P1Y5 1249 aaPredicted RBP14.69□□□□□ -0.06
VPS35-210ENST00000568784 RBBP6Q7Z6E9 1792 aaKnown RBP14.69□□□□□ -0.06
VPS35-210ENST00000568784 TKTP29401 623 aaKnown RBP14.68□□□□□ -0.06
VPS35-210ENST00000568784 MYBPC1Q00872 1141 aa14.68□□□□□ -0.06
VPS35-210ENST00000568784 FUT11Q495W5 492 aa14.68□□□□□ -0.06
VPS35-210ENST00000568784 NAPEPLDQ6IQ20 393 aa14.68□□□□□ -0.06
VPS35-210ENST00000568784 ESRP1Q6NXG1 681 aaKnown RBP14.68□□□□□ -0.06
VPS35-210ENST00000568784 HERC6Q8IVU3 1022 aa14.68□□□□□ -0.06
VPS35-210ENST00000568784 PGAM4Q8N0Y7 254 aa14.68□□□□□ -0.06
VPS35-210ENST00000568784 METTL25Q8N6Q8 603 aa14.68□□□□□ -0.06
VPS35-210ENST00000568784 WNT8BQ93098 351 aa14.68□□□□□ -0.06
VPS35-210ENST00000568784 HSPBAP1Q96EW2 488 aa14.68□□□□□ -0.06
VPS35-210ENST00000568784 ZNF512Q96ME7 567 aaPredicted RBP14.68□□□□□ -0.06
VPS35-210ENST00000568784 PTTG2Q9NZH5 202 aa14.68□□□□□ -0.06
VPS35-210ENST00000568784 DSEQ9UL01 958 aa14.68□□□□□ -0.06
VPS35-210ENST00000568784 LRRC37AA6NMS7 1700 aa14.68□□□□□ -0.06
VPS35-210ENST00000568784 DLX3O60479 287 aa14.68□□□□□ -0.06
VPS35-210ENST00000568784 BEST1O76090 585 aa14.68□□□□□ -0.06
VPS35-210ENST00000568784 UGT1A6P19224 532 aa14.68□□□□□ -0.06
VPS35-210ENST00000568784 PCSK6P29122 969 aa14.68□□□□□ -0.06
VPS35-210ENST00000568784 SLC7A2P52569 658 aa14.68□□□□□ -0.06
VPS35-210ENST00000568784 TPD52P55327 224 aaPredicted RBP14.68□□□□□ -0.06
VPS35-210ENST00000568784 PPP1R3AQ16821 1122 aa14.68□□□□□ -0.06
VPS35-210ENST00000568784 WSCD1Q658N2 575 aa14.68□□□□□ -0.06
VPS35-210ENST00000568784 CCDC28BQ9BUN5 200 aa14.68□□□□□ -0.06
VPS35-210ENST00000568784 PSMD12O00232 456 aaPredicted RBP14.68□□□□□ -0.06
VPS35-210ENST00000568784 SRP72O76094 671 aaKnown RBP14.68□□□□□ -0.06
VPS35-210ENST00000568784 AP2A1O95782 977 aa14.68□□□□□ -0.06
VPS35-210ENST00000568784 CLIC3O95833 236 aa14.68□□□□□ -0.06
VPS35-210ENST00000568784 EPHX2P34913 555 aa14.68□□□□□ -0.06
VPS35-210ENST00000568784 TAF6P49848 677 aa14.68□□□□□ -0.06
VPS35-210ENST00000568784 NR1H2P55055 460 aa14.68□□□□□ -0.06
VPS35-210ENST00000568784 CDH17Q12864 832 aa14.68□□□□□ -0.06
VPS35-210ENST00000568784 ZBTB17Q13105 803 aa14.68□□□□□ -0.06
VPS35-210ENST00000568784 KLC3Q6P597 504 aa14.68□□□□□ -0.06
VPS35-210ENST00000568784 DPP9Q86TI2 863 aa14.68□□□□□ -0.06
VPS35-210ENST00000568784 THAP11Q96EK4 314 aa14.68□□□□□ -0.06
VPS35-210ENST00000568784 ZBED3Q96IU2 234 aaPredicted RBP14.68□□□□□ -0.06
VPS35-210ENST00000568784 GMPR2Q9P2T1 348 aaKnown RBP14.68□□□□□ -0.06
VPS35-210ENST00000568784 LTBP1Q14766 1721 aa14.68□□□□□ -0.06
VPS35-210ENST00000568784 TMEM114B3SHH9 223 aa14.67□□□□□ -0.06
VPS35-210ENST00000568784 C9IYK1 514 aa14.67□□□□□ -0.06
VPS35-210ENST00000568784 PDLIM1O00151 329 aa14.67□□□□□ -0.06
VPS35-210ENST00000568784 GJA9P57773 515 aa14.67□□□□□ -0.06
VPS35-210ENST00000568784 DCTN2Q13561 401 aaKnown RBP14.67□□□□□ -0.06
VPS35-210ENST00000568784 ITGA7Q13683 1181 aa14.67□□□□□ -0.06
VPS35-210ENST00000568784 ZDHHC17Q8IUH5 632 aa14.67□□□□□ -0.06
VPS35-210ENST00000568784 PAF1Q8N7H5 531 aa14.67□□□□□ -0.06
VPS35-210ENST00000568784 PDZD8Q8NEN9 1154 aa14.67□□□□□ -0.06
VPS35-210ENST00000568784 ADCY4Q8NFM4 1077 aa14.67□□□□□ -0.06
VPS35-210ENST00000568784 DDI1Q8WTU0 396 aa14.67□□□□□ -0.06
VPS35-210ENST00000568784 PRICKLE1Q96MT3 831 aaPredicted RBP14.67□□□□□ -0.06
VPS35-210ENST00000568784 TKTL2Q9H0I9 626 aa14.67□□□□□ -0.06
VPS35-210ENST00000568784 ZNF831Q5JPB2 1677 aa14.67□□□□□ -0.06
VPS35-210ENST00000568784 ALDH1A2O94788 518 aa14.67□□□□□ -0.06
VPS35-210ENST00000568784 CXCR3P49682 368 aa14.67□□□□□ -0.06
VPS35-210ENST00000568784 CDK18Q07002 472 aa14.67□□□□□ -0.06
VPS35-210ENST00000568784 STX5Q13190 355 aa14.67□□□□□ -0.06
VPS35-210ENST00000568784 NOMO2Q5JPE7 1267 aa14.67□□□□□ -0.06
VPS35-210ENST00000568784 ZNF484Q5JVG2 852 aa14.67□□□□□ -0.06
VPS35-210ENST00000568784 METTL21CQ5VZV1 264 aa14.67□□□□□ -0.06
VPS35-210ENST00000568784 STEAP4Q687X5 459 aa14.67□□□□□ -0.06
VPS35-210ENST00000568784 PBXIP1Q96AQ6 731 aa14.67□□□□□ -0.06
VPS35-210ENST00000568784 RNF39Q9H2S5 420 aa14.67□□□□□ -0.06
VPS35-210ENST00000568784 ZDHHC7Q9NXF8 308 aa14.67□□□□□ -0.06
VPS35-210ENST00000568784 GIMAP2Q9UG22 337 aa14.67□□□□□ -0.06
VPS35-210ENST00000568784 OR12D3Q9UGF7 316 aa14.67□□□□□ -0.06
VPS35-210ENST00000568784 ADM5C9JUS6 153 aa14.67□□□□□ -0.06
VPS35-210ENST00000568784 TRIM38O00635 465 aa14.67□□□□□ -0.06
VPS35-210ENST00000568784 ZNF195O14628 629 aa14.67□□□□□ -0.06
VPS35-210ENST00000568784 CABYRO75952 493 aa14.67□□□□□ -0.06
VPS35-210ENST00000568784 FBXO21O94952 628 aa14.67□□□□□ -0.06
VPS35-210ENST00000568784 PRKCGP05129 697 aa14.67□□□□□ -0.06
VPS35-210ENST00000568784 HSPA8P11142 646 aaKnown RBP14.67□□□□□ -0.06
VPS35-210ENST00000568784 LRPAP1P30533 357 aa14.67□□□□□ -0.06
VPS35-210ENST00000568784 NOS2P35228 1153 aa14.67□□□□□ -0.06
VPS35-210ENST00000568784 ADRA1BP35368 520 aa14.67□□□□□ -0.06
VPS35-210ENST00000568784 MAGEA6P43360 314 aa14.67□□□□□ -0.06
VPS35-210ENST00000568784 CHRNA4P43681 627 aa14.67□□□□□ -0.06
VPS35-210ENST00000568784 TAS2R39P59534 338 aa14.67□□□□□ -0.06
VPS35-210ENST00000568784 GRIK4Q16099 956 aa14.67□□□□□ -0.06
VPS35-210ENST00000568784 B3GALNT2Q8NCR0 500 aa14.67□□□□□ -0.06
VPS35-210ENST00000568784 SLC2A6Q9UGQ3 507 aa14.67□□□□□ -0.06
VPS35-210ENST00000568784 RAB26Q9ULW5 256 aa14.67□□□□□ -0.06
VPS35-210ENST00000568784 DMTF1Q9Y222 760 aa14.67□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms