RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 ZNF672Q499Z4 452 aaPredicted RBP3.07□□□□□ -1.92
VPS35-207ENST00000568191 SYTL3Q4VX76 610 aa3.07□□□□□ -1.92
VPS35-207ENST00000568191 PLEKHO1Q53GL0 409 aaPredicted RBP3.07□□□□□ -1.92
VPS35-207ENST00000568191 XRRA1Q6P2D8 792 aa3.07□□□□□ -1.92
VPS35-207ENST00000568191 DSTYKQ6XUX3 929 aa3.07□□□□□ -1.92
VPS35-207ENST00000568191 SYNE3Q6ZMZ3 975 aa3.07□□□□□ -1.92
VPS35-207ENST00000568191 RNF144BQ7Z419 303 aa3.07□□□□□ -1.92
VPS35-207ENST00000568191 BRSK2Q8IWQ3 736 aa3.07□□□□□ -1.92
VPS35-207ENST00000568191 RBFAQ8N0V3 343 aa3.07□□□□□ -1.92
VPS35-207ENST00000568191 SCAIQ8N9R8 606 aa3.07□□□□□ -1.92
VPS35-207ENST00000568191 OR6Y1Q8NGX8 325 aa3.07□□□□□ -1.92
VPS35-207ENST00000568191 C2CD4CQ8TF44 421 aa3.07□□□□□ -1.92
VPS35-207ENST00000568191 RUBCNQ92622 972 aa3.07□□□□□ -1.92
VPS35-207ENST00000568191 GOLGA1Q92805 767 aa3.07□□□□□ -1.92
VPS35-207ENST00000568191 TMEM18Q96B42 140 aa3.07□□□□□ -1.92
VPS35-207ENST00000568191 TXNDC15Q96J42 360 aa3.07□□□□□ -1.92
VPS35-207ENST00000568191 PABPC3Q9H361 631 aaKnown RBP3.07□□□□□ -1.92
VPS35-207ENST00000568191 TAF1DQ9H5J8 278 aaPredicted RBP3.07□□□□□ -1.92
VPS35-207ENST00000568191 ZNF556Q9HAH1 456 aa3.07□□□□□ -1.92
VPS35-207ENST00000568191 SEPSECSQ9HD40 501 aaKnown RBP3.07□□□□□ -1.92
VPS35-207ENST00000568191 SLC22A11Q9NSA0 550 aa3.07□□□□□ -1.92
VPS35-207ENST00000568191 GRHL1Q9NZI5 618 aa3.07□□□□□ -1.92
VPS35-207ENST00000568191 AGO1Q9UL18 857 aaKnown RBP3.07□□□□□ -1.92
VPS35-207ENST00000568191 SUFUQ9UMX1 484 aa3.07□□□□□ -1.92
VPS35-207ENST00000568191 TCF20Q9UGU0 1960 aaKnown RBP3.07□□□□□ -1.92
VPS35-207ENST00000568191 LINC01553A4QN01 128 aa3.06□□□□□ -1.92
VPS35-207ENST00000568191 DDTLA6NHG4 134 aaPredicted RBP3.06□□□□□ -1.92
VPS35-207ENST00000568191 HMX3A6NHT5 357 aa3.06□□□□□ -1.92
VPS35-207ENST00000568191 CHL1O00533 1208 aa3.06□□□□□ -1.92
VPS35-207ENST00000568191 METTL18O95568 372 aa3.06□□□□□ -1.92
VPS35-207ENST00000568191 SERPINF1P36955 418 aa3.06□□□□□ -1.92
VPS35-207ENST00000568191 RPL3P39023 403 aaKnown RBP3.06□□□□□ -1.92
VPS35-207ENST00000568191 THPOP40225 353 aa3.06□□□□□ -1.92
VPS35-207ENST00000568191 PNPLA4P41247 253 aa3.06□□□□□ -1.92
VPS35-207ENST00000568191 HNF4GQ14541 408 aa3.06□□□□□ -1.92
VPS35-207ENST00000568191 ZNF284Q2VY69 593 aa3.06□□□□□ -1.92
VPS35-207ENST00000568191 ZNF718Q3SXZ3 478 aa3.06□□□□□ -1.92
VPS35-207ENST00000568191 SYCP2LQ5T4T6 812 aa3.06□□□□□ -1.92
VPS35-207ENST00000568191 ARMC9Q7Z3E5 817 aa3.06□□□□□ -1.92
VPS35-207ENST00000568191 SCAMP5Q8TAC9 235 aa3.06□□□□□ -1.92
VPS35-207ENST00000568191 SLITRK1Q96PX8 696 aa3.06□□□□□ -1.92
VPS35-207ENST00000568191 RMDN3Q96TC7 470 aa3.06□□□□□ -1.92
VPS35-207ENST00000568191 PAGR1Q9BTK6 254 aa3.06□□□□□ -1.92
VPS35-207ENST00000568191 LHPPQ9H008 270 aa3.06□□□□□ -1.92
VPS35-207ENST00000568191 ACAD9Q9H845 621 aa3.06□□□□□ -1.92
VPS35-207ENST00000568191 DDX31Q9H8H2 851 aaKnown RBP3.06□□□□□ -1.92
VPS35-207ENST00000568191 TCF7L2Q9NQB0 619 aa3.06□□□□□ -1.92
VPS35-207ENST00000568191 THAP1Q9NVV9 213 aa3.06□□□□□ -1.92
VPS35-207ENST00000568191 OCIAD1Q9NX40 245 aa3.06□□□□□ -1.92
VPS35-207ENST00000568191 KCNG2Q9UJ96 466 aa3.06□□□□□ -1.92
VPS35-207ENST00000568191 LZTS1Q9Y250 596 aa3.06□□□□□ -1.92
VPS35-207ENST00000568191 IGLV5-37A0A075B6J1 123 aa3.05□□□□□ -1.92
VPS35-207ENST00000568191 E7EVH7 732 aa3.05□□□□□ -1.92
VPS35-207ENST00000568191 GRID2O43424 1007 aa3.05□□□□□ -1.92
VPS35-207ENST00000568191 BUB3O43684 328 aa3.05□□□□□ -1.92
VPS35-207ENST00000568191 F7P08709 466 aaPredicted RBP3.05□□□□□ -1.92
VPS35-207ENST00000568191 MYF6P23409 242 aa3.05□□□□□ -1.92
VPS35-207ENST00000568191 AARSP49588 968 aaKnown RBP eCLIP3.05□□□□□ -1.92
VPS35-207ENST00000568191 ARHGAP8P85298 464 aa3.05□□□□□ -1.92
VPS35-207ENST00000568191 POU5F1BQ06416 359 aa3.05□□□□□ -1.92
VPS35-207ENST00000568191 ACSM2AQ08AH3 577 aa3.05□□□□□ -1.92
VPS35-207ENST00000568191 THOC5Q13769 683 aaKnown RBP3.05□□□□□ -1.92
VPS35-207ENST00000568191 BLMHQ13867 455 aa3.05□□□□□ -1.92
VPS35-207ENST00000568191 RRAGAQ7L523 313 aa3.05□□□□□ -1.92
VPS35-207ENST00000568191 GHDCQ8N2G8 530 aa3.05□□□□□ -1.92
VPS35-207ENST00000568191 ZMIZ2Q8NF64 920 aa3.05□□□□□ -1.92
VPS35-207ENST00000568191 OR1N1Q8NGS0 311 aa3.05□□□□□ -1.92
VPS35-207ENST00000568191 SVIPQ8NHG7 77 aa3.05□□□□□ -1.92
VPS35-207ENST00000568191 ADGRG7Q96K78 797 aa3.05□□□□□ -1.92
VPS35-207ENST00000568191 WDR12Q9GZL7 423 aaKnown RBP3.05□□□□□ -1.92
VPS35-207ENST00000568191 ZNF700Q9H0M5 742 aa3.05□□□□□ -1.92
VPS35-207ENST00000568191 ABHD16BQ9H3Z7 469 aa3.05□□□□□ -1.92
VPS35-207ENST00000568191 SAYSD1Q9NPB0 183 aa3.05□□□□□ -1.92
VPS35-207ENST00000568191 UPB1Q9UBR1 384 aa3.05□□□□□ -1.92
VPS35-207ENST00000568191 ERRFI1Q9UJM3 462 aaPredicted RBP3.05□□□□□ -1.92
VPS35-207ENST00000568191 KCND3Q9UK17 655 aa3.05□□□□□ -1.92
VPS35-207ENST00000568191 SLC45A1Q9Y2W3 748 aa3.05□□□□□ -1.92
VPS35-207ENST00000568191 RAI2Q9Y5P3 530 aa3.05□□□□□ -1.92
VPS35-207ENST00000568191 NFS1Q9Y697 457 aa3.05□□□□□ -1.92
VPS35-207ENST00000568191 SAA2-SAA4A0A096LPE2 208 aa3.04□□□□□ -1.92
VPS35-207ENST00000568191 IGLV5-52A0A0A0MRZ9 124 aa3.04□□□□□ -1.92
VPS35-207ENST00000568191 A0A0B4J293 547 aa3.04□□□□□ -1.92
VPS35-207ENST00000568191 A0A0U1RQJ8 604 aa3.04□□□□□ -1.92
VPS35-207ENST00000568191 FAM157AC9JC47 383 aa3.04□□□□□ -1.92
VPS35-207ENST00000568191 CLGNO14967 610 aa3.04□□□□□ -1.92
VPS35-207ENST00000568191 SOCS5O75159 536 aa3.04□□□□□ -1.92
VPS35-207ENST00000568191 KRT38O76015 456 aa3.04□□□□□ -1.92
VPS35-207ENST00000568191 MTA2O94776 668 aa3.04□□□□□ -1.92
VPS35-207ENST00000568191 CLDN7O95471 211 aa3.04□□□□□ -1.92
VPS35-207ENST00000568191 PPP1R3DO95685 299 aa3.04□□□□□ -1.92
VPS35-207ENST00000568191 CSTBP04080 98 aaKnown RBP3.04□□□□□ -1.92
VPS35-207ENST00000568191 ZNF12P17014 697 aa3.04□□□□□ -1.92
VPS35-207ENST00000568191 PDLIM4P50479 330 aa3.04□□□□□ -1.92
VPS35-207ENST00000568191 ADORA2A-AS1P86434 159 aa3.04□□□□□ -1.92
VPS35-207ENST00000568191 ECT2LQ008S8 904 aa3.04□□□□□ -1.92
VPS35-207ENST00000568191 PDCLQ13371 301 aa3.04□□□□□ -1.92
VPS35-207ENST00000568191 SNTA1Q13424 505 aa3.04□□□□□ -1.92
VPS35-207ENST00000568191 PKP1Q13835 747 aa3.04□□□□□ -1.92
VPS35-207ENST00000568191 BYSLQ13895 437 aaKnown RBP3.04□□□□□ -1.92
VPS35-207ENST00000568191 BRD3Q15059 726 aa3.04□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 122.8 ms