RNA–Protein interactions for RNA: ENST00000563418.2

CLK3-212, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 10,498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-212ENST00000563418 GSDMCQ9BYG8 508 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 TP63Q9H3D4 680 aaPredicted RBP6.33□□□□□ -1.4
CLK3-212ENST00000563418 KRCC1Q9NPI7 259 aaPredicted RBP6.33□□□□□ -1.4
CLK3-212ENST00000563418 EIF3LQ9Y262 564 aaKnown RBP6.33□□□□□ -1.4
CLK3-212ENST00000563418 FAM170AA1A519 330 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 MPZL2O60487 215 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 RPL17P18621 184 aaKnown RBP6.33□□□□□ -1.4
CLK3-212ENST00000563418 AKT1P31749 480 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 PDK1Q15118 436 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 SSX2Q16385 188 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 ARSKQ6UWY0 536 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 UNC5BQ8IZJ1 945 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 CYP4Z2PQ8N1L4 340 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 TTC16Q8NEE8 873 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 NACC2Q96BF6 587 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 THUMPD3Q9BV44 507 aaKnown RBP6.33□□□□□ -1.4
CLK3-212ENST00000563418 TMEM8AQ9HCN3 771 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 STK32BQ9NY57 414 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 MST1RQ04912 1400 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 EFCAB9A8MZ26 197 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 ITGA10O75578 1167 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 ABCG1P45844 678 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 FSTL1Q12841 308 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 VPS72Q15906 364 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 MIIPQ5JXC2 388 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 BRSK2Q8IWQ3 736 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 SEPHS2Q99611 448 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 SEMA6BQ9H3T3 888 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 TLL2Q9Y6L7 1015 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 J3QRK9 145 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 WDPCPO95876 746 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 ZNF3P17036 446 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 DNAJB2P25686 324 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 ANTXR2P58335 489 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 PHKG1Q16816 387 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 ZNF404Q494X3 552 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 PLEKHG4Q58EX7 1191 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 NLRX1Q86UT6 975 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 FBXL8Q96CD0 374 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 PPP3R2Q96LZ3 170 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 ZC3H12CQ9C0D7 883 aaKnown RBP6.33□□□□□ -1.4
CLK3-212ENST00000563418 PTTG3PQ9NZH4 202 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 SEC14L4Q9UDX3 406 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 RAB23Q9ULC3 237 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 H0YAE9 185 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 CST8O60676 142 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 MYBP10242 640 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 PSMA1P25786 263 aaKnown RBP6.33□□□□□ -1.4
CLK3-212ENST00000563418 AP1S2P56377 157 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 MOGSQ13724 837 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 TBRG1Q3YBR2 411 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 TPRG1LQ5T0D9 272 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 LRRC38Q5VT99 294 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 VSTM1Q6UX27 236 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 LRRC57Q8N9N7 239 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 EXT2Q93063 718 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 SPOCK3Q9BQ16 436 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 TDRD1Q9BXT4 1180 aaKnown RBP6.33□□□□□ -1.4
CLK3-212ENST00000563418 PRDM5Q9NQX1 630 aaPredicted RBP6.33□□□□□ -1.4
CLK3-212ENST00000563418 PDGFCQ9NRA1 345 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 TAS2R9Q9NYW1 312 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 H2AFY2Q9P0M6 372 aaPredicted RBP6.33□□□□□ -1.4
CLK3-212ENST00000563418 ABCC6O95255 1503 aa6.33□□□□□ -1.4
CLK3-212ENST00000563418 AQP12BA6NM10 295 aa6.32□□□□□ -1.4
CLK3-212ENST00000563418 GMDSO60547 372 aa6.32□□□□□ -1.4
CLK3-212ENST00000563418 ELK3P41970 407 aa6.32□□□□□ -1.4
CLK3-212ENST00000563418 RAB4BP61018 213 aa6.32□□□□□ -1.4
CLK3-212ENST00000563418 IDI1Q13907 227 aa6.32□□□□□ -1.4
CLK3-212ENST00000563418 COL19A1Q14993 1142 aa6.32□□□□□ -1.4
CLK3-212ENST00000563418 TRMT1LQ7Z2T5 733 aaKnown RBP6.32□□□□□ -1.4
CLK3-212ENST00000563418 SLC44A2Q8IWA5 706 aaPredicted RBP6.32□□□□□ -1.4
CLK3-212ENST00000563418 AQP12AQ8IXF9 295 aa6.32□□□□□ -1.4
CLK3-212ENST00000563418 LPCAT1Q8NF37 534 aa6.32□□□□□ -1.4
CLK3-212ENST00000563418 RHBDF1Q96CC6 855 aa6.32□□□□□ -1.4
CLK3-212ENST00000563418 RIBC2Q9H4K1 309 aa6.32□□□□□ -1.4
CLK3-212ENST00000563418 PCDHGB4Q9UN71 923 aa6.32□□□□□ -1.4
CLK3-212ENST00000563418 DDX52Q9Y2R4 599 aaKnown RBP eCLIP6.32□□□□□ -1.4
CLK3-212ENST00000563418 HSPB11Q9Y547 144 aa6.32□□□□□ -1.4
CLK3-212ENST00000563418 LMTK3Q96Q04 1460 aa6.32□□□□□ -1.4
CLK3-212ENST00000563418 SOAT2O75908 522 aa6.32□□□□□ -1.4
CLK3-212ENST00000563418 BPGMP07738 259 aa6.32□□□□□ -1.4
CLK3-212ENST00000563418 ASNSP08243 561 aa6.32□□□□□ -1.4
CLK3-212ENST00000563418 SFT2D3Q587I9 215 aa6.32□□□□□ -1.4
CLK3-212ENST00000563418 CCDC117Q8IWD4 279 aaPredicted RBP6.32□□□□□ -1.4
CLK3-212ENST00000563418 KLHL6Q8WZ60 621 aa6.32□□□□□ -1.4
CLK3-212ENST00000563418 SEC14L1Q92503 715 aa6.32□□□□□ -1.4
CLK3-212ENST00000563418 ULK4Q96C45 1275 aa6.32□□□□□ -1.4
CLK3-212ENST00000563418 GLT1D1Q96MS3 346 aa6.32□□□□□ -1.4
CLK3-212ENST00000563418 TTYH3Q9C0H2 523 aa6.32□□□□□ -1.4
CLK3-212ENST00000563418 TMEM161AQ9NX61 479 aa6.32□□□□□ -1.4
CLK3-212ENST00000563418 HLA-DRAP01903 254 aa6.32□□□□□ -1.4
CLK3-212ENST00000563418 PRG2P13727 222 aa6.32□□□□□ -1.4
CLK3-212ENST00000563418 GALNT3Q14435 633 aa6.32□□□□□ -1.4
CLK3-212ENST00000563418 PSMD5Q16401 504 aa6.32□□□□□ -1.4
CLK3-212ENST00000563418 FAM76BQ5HYJ3 339 aa6.32□□□□□ -1.4
CLK3-212ENST00000563418 FAM92BQ6ZTR7 304 aa6.32□□□□□ -1.4
CLK3-212ENST00000563418 BPHLQ86WA6 291 aaPredicted RBP6.32□□□□□ -1.4
CLK3-212ENST00000563418 PLCZ1Q86YW0 608 aa6.32□□□□□ -1.4
CLK3-212ENST00000563418 SLITRK4Q8IW52 837 aa6.32□□□□□ -1.4
CLK3-212ENST00000563418 ZDHHC18Q9NUE0 388 aa6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms