RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 AGTP01019 485 aa9.37□□□□□ -0.91
VPS39-205ENST00000562258 VCLP18206 1134 aa9.37□□□□□ -0.91
VPS39-205ENST00000562258 MLLT6P55198 1093 aaPredicted RBP9.37□□□□□ -0.91
VPS39-205ENST00000562258 YBEYP58557 167 aaPredicted RBP9.37□□□□□ -0.91
VPS39-205ENST00000562258 RAB33AQ14088 237 aa9.37□□□□□ -0.91
VPS39-205ENST00000562258 MORF4L2Q15014 288 aa9.37□□□□□ -0.91
VPS39-205ENST00000562258 AARS2Q5JTZ9 985 aaKnown RBP9.37□□□□□ -0.91
VPS39-205ENST00000562258 NEPROQ6NW34 567 aa9.37□□□□□ -0.91
VPS39-205ENST00000562258 VITQ6UXI7 678 aa9.37□□□□□ -0.91
VPS39-205ENST00000562258 TRMT10CQ7L0Y3 403 aaKnown RBP9.37□□□□□ -0.91
VPS39-205ENST00000562258 CAMK1DQ8IU85 385 aa9.37□□□□□ -0.91
VPS39-205ENST00000562258 TCEAL4Q96EI5 215 aa9.37□□□□□ -0.91
VPS39-205ENST00000562258 NAT9Q9BTE0 207 aa9.37□□□□□ -0.91
VPS39-205ENST00000562258 BRD8Q9H0E9 1235 aa9.37□□□□□ -0.91
VPS39-205ENST00000562258 LINC00597Q9H2U6 94 aa9.37□□□□□ -0.91
VPS39-205ENST00000562258 STN1Q9H668 368 aaKnown RBP9.37□□□□□ -0.91
VPS39-205ENST00000562258 IL1RAPL1Q9NZN1 696 aa9.37□□□□□ -0.91
VPS39-205ENST00000562258 GULP1Q9UBP9 304 aa9.37□□□□□ -0.91
VPS39-205ENST00000562258 CEP250Q9BV73 2442 aa9.37□□□□□ -0.91
VPS39-205ENST00000562258 CACNA1EQ15878 2313 aa9.37□□□□□ -0.91
VPS39-205ENST00000562258 LIASO43766 372 aa9.37□□□□□ -0.91
VPS39-205ENST00000562258 MT-CO1P00395 513 aa9.37□□□□□ -0.91
VPS39-205ENST00000562258 PLK1P53350 603 aa9.37□□□□□ -0.91
VPS39-205ENST00000562258 CDH4P55283 916 aa9.37□□□□□ -0.91
VPS39-205ENST00000562258 OGDHQ02218 1023 aa9.37□□□□□ -0.91
VPS39-205ENST00000562258 SULT2A1Q06520 285 aa9.37□□□□□ -0.91
VPS39-205ENST00000562258 STXBP5Q5T5C0 1151 aa9.37□□□□□ -0.91
VPS39-205ENST00000562258 RASIP1Q5U651 963 aa9.37□□□□□ -0.91
VPS39-205ENST00000562258 FAM109BQ6ICB4 259 aaPredicted RBP9.37□□□□□ -0.91
VPS39-205ENST00000562258 OLFML1Q6UWY5 402 aa9.37□□□□□ -0.91
VPS39-205ENST00000562258 ZNF513Q8N8E2 541 aaPredicted RBP9.37□□□□□ -0.91
VPS39-205ENST00000562258 ARMC2Q8NEN0 867 aa9.37□□□□□ -0.91
VPS39-205ENST00000562258 PHOSPHO2Q8TCD6 241 aa9.37□□□□□ -0.91
VPS39-205ENST00000562258 MAGEB10Q96LZ2 347 aaPredicted RBP9.37□□□□□ -0.91
VPS39-205ENST00000562258 CLIC5Q9NZA1 410 aa9.37□□□□□ -0.91
VPS39-205ENST00000562258 PSMC3IPQ9P2W1 217 aaPredicted RBP9.37□□□□□ -0.91
VPS39-205ENST00000562258 PPARGC1AQ9UBK2 798 aaKnown RBP9.37□□□□□ -0.91
VPS39-205ENST00000562258 SCML2Q9UQR0 700 aa9.37□□□□□ -0.91
VPS39-205ENST00000562258 RAI2Q9Y5P3 530 aa9.37□□□□□ -0.91
VPS39-205ENST00000562258 ATG2BQ96BY7 2078 aa9.37□□□□□ -0.91
VPS39-205ENST00000562258 TARSL2A2RTX5 802 aaKnown RBP9.36□□□□□ -0.91
VPS39-205ENST00000562258 ZNF840PA6NDX5 716 aa9.36□□□□□ -0.91
VPS39-205ENST00000562258 DNALI1O14645 258 aaPredicted RBP9.36□□□□□ -0.91
VPS39-205ENST00000562258 KIAA0355O15063 1070 aa9.36□□□□□ -0.91
VPS39-205ENST00000562258 PXNP49023 591 aaPredicted RBP9.36□□□□□ -0.91
VPS39-205ENST00000562258 TEX44Q53QW1 395 aa9.36□□□□□ -0.91
VPS39-205ENST00000562258 CERCAMQ5T4B2 595 aa9.36□□□□□ -0.91
VPS39-205ENST00000562258 ATG16L1Q676U5 607 aa9.36□□□□□ -0.91
VPS39-205ENST00000562258 RHBDF2Q6PJF5 856 aa9.36□□□□□ -0.91
VPS39-205ENST00000562258 LEMD2Q8NC56 503 aa9.36□□□□□ -0.91
VPS39-205ENST00000562258 EPS8L3Q8TE67 593 aaKnown RBP9.36□□□□□ -0.91
VPS39-205ENST00000562258 FNIP1Q8TF40 1166 aa9.36□□□□□ -0.91
VPS39-205ENST00000562258 HDAC10Q969S8 669 aa9.36□□□□□ -0.91
VPS39-205ENST00000562258 C1QTNF7Q9BXJ2 289 aa9.36□□□□□ -0.91
VPS39-205ENST00000562258 CAPN10Q9HC96 672 aa9.36□□□□□ -0.91
VPS39-205ENST00000562258 MTPAPQ9NVV4 582 aaKnown RBP eCLIP9.36□□□□□ -0.91
VPS39-205ENST00000562258 TLR6Q9Y2C9 796 aa9.36□□□□□ -0.91
VPS39-205ENST00000562258 UTRNP46939 3433 aa9.36□□□□□ -0.91
VPS39-205ENST00000562258 HACD1B0YJ81 288 aa9.36□□□□□ -0.91
VPS39-205ENST00000562258 ASGR2P07307 311 aa9.36□□□□□ -0.91
VPS39-205ENST00000562258 STMN1P16949 149 aa9.36□□□□□ -0.91
VPS39-205ENST00000562258 ZNF7P17097 686 aaPredicted RBP9.36□□□□□ -0.91
VPS39-205ENST00000562258 KRT4P19013 534 aa9.36□□□□□ -0.91
VPS39-205ENST00000562258 MFSD4BQ5TF39 518 aa9.36□□□□□ -0.91
VPS39-205ENST00000562258 KCNMB4Q86W47 210 aa9.36□□□□□ -0.91
VPS39-205ENST00000562258 TSTD1Q8NFU3 115 aa9.36□□□□□ -0.91
VPS39-205ENST00000562258 PHF21BQ96EK2 531 aa9.36□□□□□ -0.91
VPS39-205ENST00000562258 SIPA1Q96FS4 1042 aa9.36□□□□□ -0.91
VPS39-205ENST00000562258 FEM1CQ96JP0 617 aa9.36□□□□□ -0.91
VPS39-205ENST00000562258 STRA6Q9BX79 667 aa9.36□□□□□ -0.91
VPS39-205ENST00000562258 PBX4Q9BYU1 374 aa9.36□□□□□ -0.91
VPS39-205ENST00000562258 FRMD8P1Q9BZ68 369 aaPredicted RBP9.36□□□□□ -0.91
VPS39-205ENST00000562258 PHGDHO43175 533 aaKnown RBP9.36□□□□□ -0.91
VPS39-205ENST00000562258 SEC24AO95486 1093 aa9.36□□□□□ -0.91
VPS39-205ENST00000562258 CHRNA4P43681 627 aa9.36□□□□□ -0.91
VPS39-205ENST00000562258 DSG1Q02413 1049 aa9.36□□□□□ -0.91
VPS39-205ENST00000562258 CTBP1Q13363 440 aa9.36□□□□□ -0.91
VPS39-205ENST00000562258 RTL3Q8N8U3 475 aaKnown RBP9.36□□□□□ -0.91
VPS39-205ENST00000562258 MYLIPQ8WY64 445 aa9.36□□□□□ -0.91
VPS39-205ENST00000562258 PLD4Q96BZ4 506 aa9.36□□□□□ -0.91
VPS39-205ENST00000562258 HES6Q96HZ4 224 aa9.36□□□□□ -0.91
VPS39-205ENST00000562258 PRKD2Q9BZL6 878 aa9.36□□□□□ -0.91
VPS39-205ENST00000562258 GLOD4Q9HC38 313 aa9.36□□□□□ -0.91
VPS39-205ENST00000562258 LNPEPQ9UIQ6 1025 aa9.36□□□□□ -0.91
VPS39-205ENST00000562258 DRG1Q9Y295 367 aaKnown RBP9.36□□□□□ -0.91
VPS39-205ENST00000562258 NR2E1Q9Y466 385 aa9.36□□□□□ -0.91
VPS39-205ENST00000562258 BACE2Q9Y5Z0 518 aa9.36□□□□□ -0.91
VPS39-205ENST00000562258 HS3ST4Q9Y661 456 aa9.36□□□□□ -0.91
VPS39-205ENST00000562258 MYH7BA7E2Y1 1941 aa9.36□□□□□ -0.91
VPS39-205ENST00000562258 CACNA1HO95180 2353 aa9.36□□□□□ -0.91
VPS39-205ENST00000562258 DDX60LQ5H9U9 1706 aaKnown RBP9.36□□□□□ -0.91
VPS39-205ENST00000562258 MYH10P35580 1976 aa9.35□□□□□ -0.91
VPS39-205ENST00000562258 CFIP05156 583 aa9.35□□□□□ -0.91
VPS39-205ENST00000562258 GKP32189 559 aa9.35□□□□□ -0.91
VPS39-205ENST00000562258 CDKN2BP42772 138 aa9.35□□□□□ -0.91
VPS39-205ENST00000562258 BTKQ06187 659 aa9.35□□□□□ -0.91
VPS39-205ENST00000562258 FAM83EQ2M2I3 478 aa9.35□□□□□ -0.91
VPS39-205ENST00000562258 C14orf80Q86SX3 495 aa9.35□□□□□ -0.91
VPS39-205ENST00000562258 LDB1Q86U70 411 aaPredicted RBP9.35□□□□□ -0.91
VPS39-205ENST00000562258 TMEM139Q8IV31 216 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms