RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 CAMSAP3Q9P1Y5 1249 aaPredicted RBP7.63□□□□□ -1.19
VPS39-204ENST00000561818 TBC1D14Q9P2M4 693 aa7.63□□□□□ -1.19
VPS39-204ENST00000561818 UBA2Q9UBT2 640 aaPredicted RBP7.63□□□□□ -1.19
VPS39-204ENST00000561818 CTNNAL1Q9UBT7 734 aa7.63□□□□□ -1.19
VPS39-204ENST00000561818 TLK1Q9UKI8 766 aa7.63□□□□□ -1.19
VPS39-204ENST00000561818 SORCS3Q9UPU3 1222 aa7.63□□□□□ -1.19
VPS39-204ENST00000561818 PLLPQ9Y342 182 aa7.63□□□□□ -1.19
VPS39-204ENST00000561818 TCAF1Q9Y4C2 921 aa7.63□□□□□ -1.19
VPS39-204ENST00000561818 COMMD10Q9Y6G5 202 aa7.63□□□□□ -1.19
VPS39-204ENST00000561818 A0A087X1B8 175 aa7.62□□□□□ -1.19
VPS39-204ENST00000561818 TCP11X1B4DZS4 312 aa7.62□□□□□ -1.19
VPS39-204ENST00000561818 C5orf67F2Z3F1 127 aa7.62□□□□□ -1.19
VPS39-204ENST00000561818 F8W810 466 aa7.62□□□□□ -1.19
VPS39-204ENST00000561818 SLCO1B7G3V0H7 640 aa7.62□□□□□ -1.19
VPS39-204ENST00000561818 I6L893 689 aaPredicted RBP7.62□□□□□ -1.19
VPS39-204ENST00000561818 COCHO43405 550 aa7.62□□□□□ -1.19
VPS39-204ENST00000561818 KDELR3O43731 214 aa7.62□□□□□ -1.19
VPS39-204ENST00000561818 SOCS5O75159 536 aa7.62□□□□□ -1.19
VPS39-204ENST00000561818 STC2O76061 302 aa7.62□□□□□ -1.19
VPS39-204ENST00000561818 MAP3K6O95382 1288 aa7.62□□□□□ -1.19
VPS39-204ENST00000561818 NDST3O95803 873 aa7.62□□□□□ -1.19
VPS39-204ENST00000561818 DHRS4L1P0CG22 281 aa7.62□□□□□ -1.19
VPS39-204ENST00000561818 MBL2P11226 248 aaPredicted RBP7.62□□□□□ -1.19
VPS39-204ENST00000561818 CSF2RAP15509 400 aa7.62□□□□□ -1.19
VPS39-204ENST00000561818 TCF3P15923 654 aa7.62□□□□□ -1.19
VPS39-204ENST00000561818 HMGA1P17096 107 aaKnown RBP7.62□□□□□ -1.19
VPS39-204ENST00000561818 OGNP20774 298 aaKnown RBP7.62□□□□□ -1.19
VPS39-204ENST00000561818 TYK2P29597 1187 aa7.62□□□□□ -1.19
VPS39-204ENST00000561818 CORO1AP31146 461 aaKnown RBP7.62□□□□□ -1.19
VPS39-204ENST00000561818 ADRA1AP35348 466 aa7.62□□□□□ -1.19
VPS39-204ENST00000561818 CLCN5P51795 746 aa7.62□□□□□ -1.19
VPS39-204ENST00000561818 NEK3P51956 506 aa7.62□□□□□ -1.19
VPS39-204ENST00000561818 HNRNPH2P55795 449 aaKnown RBP7.62□□□□□ -1.19
VPS39-204ENST00000561818 WNT3AP56704 352 aa7.62□□□□□ -1.19
VPS39-204ENST00000561818 AP1S1P61966 158 aa7.62□□□□□ -1.19
VPS39-204ENST00000561818 USP46P62068 366 aa7.62□□□□□ -1.19
VPS39-204ENST00000561818 PRAMEP78395 509 aa7.62□□□□□ -1.19
VPS39-204ENST00000561818 IRX1P78414 480 aaPredicted RBP7.62□□□□□ -1.19
VPS39-204ENST00000561818 POU4F1Q01851 419 aa7.62□□□□□ -1.19
VPS39-204ENST00000561818 SULT2A1Q06520 285 aa7.62□□□□□ -1.19
VPS39-204ENST00000561818 TWF1Q12792 350 aa7.62□□□□□ -1.19
VPS39-204ENST00000561818 CDH18Q13634 790 aa7.62□□□□□ -1.19
VPS39-204ENST00000561818 DMC1Q14565 340 aa7.62□□□□□ -1.19
VPS39-204ENST00000561818 ZRSR2Q15696 482 aaKnown RBP7.62□□□□□ -1.19
VPS39-204ENST00000561818 LRRC26Q2I0M4 334 aa7.62□□□□□ -1.19
VPS39-204ENST00000561818 MPPE1Q53F39 396 aa7.62□□□□□ -1.19
VPS39-204ENST00000561818 ZDHHC20Q5W0Z9 365 aa7.62□□□□□ -1.19
VPS39-204ENST00000561818 RAP1GAP2Q684P5 730 aa7.62□□□□□ -1.19
VPS39-204ENST00000561818 IL31Q6EBC2 164 aa7.62□□□□□ -1.19
VPS39-204ENST00000561818 PRSS55Q6UWB4 352 aaPredicted RBP7.62□□□□□ -1.19
VPS39-204ENST00000561818 LIN28BQ6ZN17 250 aaKnown RBP eCLIP7.62□□□□□ -1.19
VPS39-204ENST00000561818 CAPN12Q6ZSI9 719 aa7.62□□□□□ -1.19
VPS39-204ENST00000561818 TRPM8Q7Z2W7 1104 aa7.62□□□□□ -1.19
VPS39-204ENST00000561818 DNAJB7Q7Z6W7 309 aaPredicted RBP7.62□□□□□ -1.19
VPS39-204ENST00000561818 SDCCAG8Q86SQ7 713 aaPredicted RBP7.62□□□□□ -1.19
VPS39-204ENST00000561818 C14orf80Q86SX3 495 aa7.62□□□□□ -1.19
VPS39-204ENST00000561818 SRLQ86TD4 932 aa7.62□□□□□ -1.19
VPS39-204ENST00000561818 WDR75Q8IWA0 830 aaKnown RBP7.62□□□□□ -1.19
VPS39-204ENST00000561818 LGI2Q8N0V4 545 aa7.62□□□□□ -1.19
VPS39-204ENST00000561818 IPMKQ8NFU5 416 aa7.62□□□□□ -1.19
VPS39-204ENST00000561818 OR52K1Q8NGK4 314 aa7.62□□□□□ -1.19
VPS39-204ENST00000561818 ZSCAN18Q8TBC5 510 aaPredicted RBP7.62□□□□□ -1.19
VPS39-204ENST00000561818 TCP10LQ8TDR4 215 aa7.62□□□□□ -1.19
VPS39-204ENST00000561818 STYXQ8WUJ0 223 aa7.62□□□□□ -1.19
VPS39-204ENST00000561818 ARNTL2Q8WYA1 636 aa7.62□□□□□ -1.19
VPS39-204ENST00000561818 HERVK_113Q902F9 699 aa7.62□□□□□ -1.19
VPS39-204ENST00000561818 TBRG4Q969Z0 631 aaKnown RBP eCLIP7.62□□□□□ -1.19
VPS39-204ENST00000561818 TADA1Q96BN2 335 aa7.62□□□□□ -1.19
VPS39-204ENST00000561818 PABPC5Q96DU9 382 aaKnown RBP7.62□□□□□ -1.19
VPS39-204ENST00000561818 HMCESQ96FZ2 354 aa7.62□□□□□ -1.19
VPS39-204ENST00000561818 CELF6Q96J87 481 aaKnown RBP7.62□□□□□ -1.19
VPS39-204ENST00000561818 PWWP2AQ96N64 755 aa7.62□□□□□ -1.19
VPS39-204ENST00000561818 PAIP2Q9BPZ3 127 aaKnown RBP7.62□□□□□ -1.19
VPS39-204ENST00000561818 WDR83Q9BRX9 315 aaKnown RBP7.62□□□□□ -1.19
VPS39-204ENST00000561818 KLF16Q9BXK1 252 aaPredicted RBP7.62□□□□□ -1.19
VPS39-204ENST00000561818 MANSC1Q9H8J5 431 aa7.62□□□□□ -1.19
VPS39-204ENST00000561818 C10orf88Q9H8K7 445 aa7.62□□□□□ -1.19
VPS39-204ENST00000561818 POPDC3Q9HBV1 291 aa7.62□□□□□ -1.19
VPS39-204ENST00000561818 ATP13A1Q9HD20 1204 aa7.62□□□□□ -1.19
VPS39-204ENST00000561818 ANLNQ9NQW6 1124 aa7.62□□□□□ -1.19
VPS39-204ENST00000561818 C20orf96Q9NUD7 363 aaPredicted RBP7.62□□□□□ -1.19
VPS39-204ENST00000561818 TXLNGQ9NUQ3 528 aa7.62□□□□□ -1.19
VPS39-204ENST00000561818 THAP1Q9NVV9 213 aa7.62□□□□□ -1.19
VPS39-204ENST00000561818 SYBUQ9NX95 663 aa7.62□□□□□ -1.19
VPS39-204ENST00000561818 ZDHHC7Q9NXF8 308 aa7.62□□□□□ -1.19
VPS39-204ENST00000561818 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP7.62□□□□□ -1.19
VPS39-204ENST00000561818 TMCO1Q9UM00 188 aa7.62□□□□□ -1.19
VPS39-204ENST00000561818 SLC8A2Q9UPR5 921 aa7.62□□□□□ -1.19
VPS39-204ENST00000561818 SLC27A5Q9Y2P5 690 aa7.62□□□□□ -1.19
VPS39-204ENST00000561818 MTO1Q9Y2Z2 717 aaKnown RBP7.62□□□□□ -1.19
VPS39-204ENST00000561818 SH3BP1Q9Y3L3 701 aa7.62□□□□□ -1.19
VPS39-204ENST00000561818 MRPL42Q9Y6G3 142 aaKnown RBP7.62□□□□□ -1.19
VPS39-204ENST00000561818 SLC4A7Q9Y6M7 1214 aa7.62□□□□□ -1.19
VPS39-204ENST00000561818 ZCWPW2A0A1B0GU75 182 aa7.61□□□□□ -1.19
VPS39-204ENST00000561818 LOC285095A0A1B0GVY8 99 aa7.61□□□□□ -1.19
VPS39-204ENST00000561818 E2F8A0AVK6 867 aa7.61□□□□□ -1.19
VPS39-204ENST00000561818 C2orf81A6NN90 581 aa7.61□□□□□ -1.19
VPS39-204ENST00000561818 ZBBXA8MT70 800 aa7.61□□□□□ -1.19
VPS39-204ENST00000561818 TMEM114B3SHH9 223 aa7.61□□□□□ -1.19
VPS39-204ENST00000561818 NT5C1B-RDH14C9J2C7 533 aa7.61□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms