RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 ZNF783Q6ZMS7 281 aa18.08■□□□□ 0.48
HDDC3-205ENST00000559898 PARS2Q7L3T8 475 aaKnown RBP18.08■□□□□ 0.48
HDDC3-205ENST00000559898 EID2Q8N6I1 236 aa18.08■□□□□ 0.48
HDDC3-205ENST00000559898 ARFGAP1Q8N6T3 406 aa18.08■□□□□ 0.48
HDDC3-205ENST00000559898 ZCCHC14Q8WYQ9 949 aaKnown RBP18.08■□□□□ 0.48
HDDC3-205ENST00000559898 TBC1D31Q96DN5 1066 aa18.08■□□□□ 0.48
HDDC3-205ENST00000559898 FZD10Q9ULW2 581 aa18.08■□□□□ 0.48
HDDC3-205ENST00000559898 ITM2BQ9Y287 266 aa18.08■□□□□ 0.48
HDDC3-205ENST00000559898 DAAM1Q9Y4D1 1078 aa18.08■□□□□ 0.48
HDDC3-205ENST00000559898 COL5A1P20908 1838 aaPredicted RBP18.07■□□□□ 0.48
HDDC3-205ENST00000559898 SPINT1O43278 529 aa18.07■□□□□ 0.48
HDDC3-205ENST00000559898 ITIH2P19823 946 aa18.07■□□□□ 0.48
HDDC3-205ENST00000559898 EPHA8P29322 1005 aaPredicted RBP18.07■□□□□ 0.48
HDDC3-205ENST00000559898 ABL2P42684 1182 aa18.07■□□□□ 0.48
HDDC3-205ENST00000559898 GRK6P43250 576 aa18.07■□□□□ 0.48
HDDC3-205ENST00000559898 CLCN6P51797 869 aa18.07■□□□□ 0.48
HDDC3-205ENST00000559898 C1QBPQ07021 282 aaKnown RBP18.07■□□□□ 0.48
HDDC3-205ENST00000559898 IQCB1Q15051 598 aa18.07■□□□□ 0.48
HDDC3-205ENST00000559898 CA9Q16790 459 aa18.07■□□□□ 0.48
HDDC3-205ENST00000559898 CARD16Q5EG05 197 aa18.07■□□□□ 0.48
HDDC3-205ENST00000559898 LRRC73Q5JTD7 316 aa18.07■□□□□ 0.48
HDDC3-205ENST00000559898 CCNI2Q6ZMN8 369 aaPredicted RBP18.07■□□□□ 0.48
HDDC3-205ENST00000559898 ERN2Q76MJ5 926 aaKnown RBP18.07■□□□□ 0.48
HDDC3-205ENST00000559898 SLFN11Q7Z7L1 901 aa18.07■□□□□ 0.48
HDDC3-205ENST00000559898 MFSD2AQ8NA29 543 aa18.07■□□□□ 0.48
HDDC3-205ENST00000559898 NTAN1Q96AB6 310 aa18.07■□□□□ 0.48
HDDC3-205ENST00000559898 PEBP4Q96S96 227 aa18.07■□□□□ 0.48
HDDC3-205ENST00000559898 KDM4CQ9H3R0 1056 aa18.07■□□□□ 0.48
HDDC3-205ENST00000559898 ZDHHC6Q9H6R6 413 aa18.07■□□□□ 0.48
HDDC3-205ENST00000559898 PREBQ9HCU5 417 aa18.07■□□□□ 0.48
HDDC3-205ENST00000559898 GDF3Q9NR23 364 aa18.07■□□□□ 0.48
HDDC3-205ENST00000559898 APOBEC2Q9Y235 224 aaKnown RBP18.07■□□□□ 0.48
HDDC3-205ENST00000559898 SRRM3A6NNA2 597 aaPredicted RBP18.06■□□□□ 0.48
HDDC3-205ENST00000559898 RAD51BO15315 384 aa18.06■□□□□ 0.48
HDDC3-205ENST00000559898 CREB3O43889 395 aa18.06■□□□□ 0.48
HDDC3-205ENST00000559898 PRNPP04156 253 aa18.06■□□□□ 0.48
HDDC3-205ENST00000559898 FERP16591 822 aa18.06■□□□□ 0.48
HDDC3-205ENST00000559898 ZNF143P52747 638 aaPredicted RBP18.06■□□□□ 0.48
HDDC3-205ENST00000559898 SCAPQ12770 1279 aa18.06■□□□□ 0.48
HDDC3-205ENST00000559898 SUZ12Q15022 739 aaKnown RBP18.06■□□□□ 0.48
HDDC3-205ENST00000559898 ARL13BQ3SXY8 428 aa18.06■□□□□ 0.48
HDDC3-205ENST00000559898 RETSATQ6NUM9 610 aa18.06■□□□□ 0.48
HDDC3-205ENST00000559898 DHRS13Q6UX07 377 aa18.06■□□□□ 0.48
HDDC3-205ENST00000559898 GCNT7Q6ZNI0 430 aa18.06■□□□□ 0.48
HDDC3-205ENST00000559898 ZNF571Q7Z3V5 609 aaPredicted RBP18.06■□□□□ 0.48
HDDC3-205ENST00000559898 HORMAD1Q86X24 394 aa18.06■□□□□ 0.48
HDDC3-205ENST00000559898 PCDH20Q8N6Y1 951 aaKnown RBP18.06■□□□□ 0.48
HDDC3-205ENST00000559898 TMEM145Q8NBT3 493 aa18.06■□□□□ 0.48
HDDC3-205ENST00000559898 CDC6Q99741 560 aa18.06■□□□□ 0.48
HDDC3-205ENST00000559898 BPIFA3Q9BQP9 254 aa18.06■□□□□ 0.48
HDDC3-205ENST00000559898 HEPHQ9BQS7 1158 aa18.06■□□□□ 0.48
HDDC3-205ENST00000559898 HAUS4Q9H6D7 363 aa18.06■□□□□ 0.48
HDDC3-205ENST00000559898 LRRK1Q38SD2 2015 aa18.05■□□□□ 0.48
HDDC3-205ENST00000559898 INSIG1O15503 277 aa18.05■□□□□ 0.48
HDDC3-205ENST00000559898 TNFSF14O43557 240 aa18.05■□□□□ 0.48
HDDC3-205ENST00000559898 PCDH8O95206 1070 aa18.05■□□□□ 0.48
HDDC3-205ENST00000559898 ITGAVP06756 1048 aa18.05■□□□□ 0.48
HDDC3-205ENST00000559898 SKILP12757 684 aa18.05■□□□□ 0.48
HDDC3-205ENST00000559898 ADRB3P13945 408 aa18.05■□□□□ 0.48
HDDC3-205ENST00000559898 TNFAIP3P21580 790 aa18.05■□□□□ 0.48
HDDC3-205ENST00000559898 MAPKAPK2P49137 400 aa18.05■□□□□ 0.48
HDDC3-205ENST00000559898 TMEM259Q4ZIN3 620 aa18.05■□□□□ 0.48
HDDC3-205ENST00000559898 TPRG1LQ5T0D9 272 aa18.05■□□□□ 0.48
HDDC3-205ENST00000559898 ACBD5Q5T8D3 534 aaPredicted RBP18.05■□□□□ 0.48
HDDC3-205ENST00000559898 SLC22A18ASQ8N1D0 253 aa18.05■□□□□ 0.48
HDDC3-205ENST00000559898 OR13H1Q8NG92 308 aa18.05■□□□□ 0.48
HDDC3-205ENST00000559898 MDM1Q8TC05 714 aa18.05■□□□□ 0.48
HDDC3-205ENST00000559898 HMCESQ96FZ2 354 aa18.05■□□□□ 0.48
HDDC3-205ENST00000559898 HDAC8Q9BY41 377 aa18.05■□□□□ 0.48
HDDC3-205ENST00000559898 CEP44Q9C0F1 390 aa18.05■□□□□ 0.48
HDDC3-205ENST00000559898 TTYH3Q9C0H2 523 aa18.05■□□□□ 0.48
HDDC3-205ENST00000559898 UCKL1Q9NWZ5 548 aa18.05■□□□□ 0.48
HDDC3-205ENST00000559898 FARP1Q9Y4F1 1045 aaPredicted RBP18.05■□□□□ 0.48
HDDC3-205ENST00000559898 FADS3Q9Y5Q0 445 aa18.05■□□□□ 0.48
HDDC3-205ENST00000559898 MYLKQ15746 1914 aa18.05■□□□□ 0.48
HDDC3-205ENST00000559898 DDX3XO00571 662 aaKnown RBP eCLIP18.04■□□□□ 0.486e-21■■■■□ 21.8
HDDC3-205ENST00000559898 RAMP2O60895 175 aa18.04■□□□□ 0.48
HDDC3-205ENST00000559898 ITGB7P26010 798 aa18.04■□□□□ 0.48
HDDC3-205ENST00000559898 EPHB2P29323 1055 aa18.04■□□□□ 0.48
HDDC3-205ENST00000559898 L1CAMP32004 1257 aa18.04■□□□□ 0.48
HDDC3-205ENST00000559898 MAMLD1Q13495 774 aa18.04■□□□□ 0.48
HDDC3-205ENST00000559898 STAT4Q14765 748 aa18.04■□□□□ 0.48
HDDC3-205ENST00000559898 POLD3Q15054 466 aaPredicted RBP18.04■□□□□ 0.48
HDDC3-205ENST00000559898 SETMARQ53H47 684 aaPredicted RBP18.04■□□□□ 0.48
HDDC3-205ENST00000559898 ZNF542PQ5EBM4 170 aa18.04■□□□□ 0.48
HDDC3-205ENST00000559898 SFMBT2Q5VUG0 894 aa18.04■□□□□ 0.48
HDDC3-205ENST00000559898 CYP4V2Q6ZWL3 525 aaPredicted RBP18.04■□□□□ 0.48
HDDC3-205ENST00000559898 TMPRSS7Q7RTY8 843 aa18.04■□□□□ 0.48
HDDC3-205ENST00000559898 RYBPQ8N488 228 aaPredicted RBP18.04■□□□□ 0.48
HDDC3-205ENST00000559898 CNDP2Q96KP4 475 aaKnown RBP18.04■□□□□ 0.48
HDDC3-205ENST00000559898 BMFQ96LC9 184 aa18.04■□□□□ 0.48
HDDC3-205ENST00000559898 CCDC114Q96M63 670 aa18.04■□□□□ 0.48
HDDC3-205ENST00000559898 MAGEH1Q9H213 219 aa18.04■□□□□ 0.48
HDDC3-205ENST00000559898 DYRK4Q9NR20 520 aa18.04■□□□□ 0.48
HDDC3-205ENST00000559898 FTSJ1Q9UET6 329 aa18.04■□□□□ 0.48
HDDC3-205ENST00000559898 DMTF1Q9Y222 760 aa18.04■□□□□ 0.48
HDDC3-205ENST00000559898 A0A1B0GTH6 734 aa18.03■□□□□ 0.48
HDDC3-205ENST00000559898 POM121BA6NF01 834 aa18.03■□□□□ 0.48
HDDC3-205ENST00000559898 PRAMEF26H0Y7S4 382 aa18.03■□□□□ 0.48
HDDC3-205ENST00000559898 ENC1O14682 589 aa18.03■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms