RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 HLTFQ14527 1009 aaKnown RBP eCLIP4.76□□□□□ -1.65
VPS13C-208ENST00000559119 XKR9Q5GH70 373 aa4.76□□□□□ -1.65
VPS13C-208ENST00000559119 CEP85LQ5SZL2 805 aa4.76□□□□□ -1.65
VPS13C-208ENST00000559119 STPG1Q5TH74 334 aa4.76□□□□□ -1.65
VPS13C-208ENST00000559119 ZNF449Q6P9G9 518 aa4.76□□□□□ -1.65
VPS13C-208ENST00000559119 DCUN1D3Q8IWE4 304 aa4.76□□□□□ -1.65
VPS13C-208ENST00000559119 NAGSQ8N159 534 aa4.76□□□□□ -1.65
VPS13C-208ENST00000559119 SCAIQ8N9R8 606 aa4.76□□□□□ -1.65
VPS13C-208ENST00000559119 SPATA20Q8TB22 786 aa4.76□□□□□ -1.65
VPS13C-208ENST00000559119 DEPTORQ8TB45 409 aa4.76□□□□□ -1.65
VPS13C-208ENST00000559119 TNIP3Q96KP6 325 aa4.76□□□□□ -1.65
VPS13C-208ENST00000559119 C8orf48Q96LL4 319 aa4.76□□□□□ -1.65
VPS13C-208ENST00000559119 KLQ9UEF7 1012 aa4.76□□□□□ -1.65
VPS13C-208ENST00000559119 PHTF1Q9UMS5 762 aa4.76□□□□□ -1.65
VPS13C-208ENST00000559119 DHDHQ9UQ10 334 aa4.76□□□□□ -1.65
VPS13C-208ENST00000559119 SLC45A1Q9Y2W3 748 aa4.76□□□□□ -1.65
VPS13C-208ENST00000559119 NFS1Q9Y697 457 aa4.76□□□□□ -1.65
VPS13C-208ENST00000559119 A0A096LPK6 155 aa4.75□□□□□ -1.65
VPS13C-208ENST00000559119 DYTNA2CJ06 578 aa4.75□□□□□ -1.65
VPS13C-208ENST00000559119 LYL1P12980 280 aa4.75□□□□□ -1.65
VPS13C-208ENST00000559119 RPL3P39023 403 aaKnown RBP4.75□□□□□ -1.65
VPS13C-208ENST00000559119 CXCR3P49682 368 aa4.75□□□□□ -1.65
VPS13C-208ENST00000559119 DLG1Q12959 904 aa4.75□□□□□ -1.65
VPS13C-208ENST00000559119 RBM39Q14498 530 aaKnown RBP4.75□□□□□ -1.65
VPS13C-208ENST00000559119 ANKRD44Q8N8A2 993 aa4.75□□□□□ -1.65
VPS13C-208ENST00000559119 ZNF114Q8NC26 417 aa4.75□□□□□ -1.65
VPS13C-208ENST00000559119 OR1N1Q8NGS0 311 aa4.75□□□□□ -1.65
VPS13C-208ENST00000559119 TMEM41AQ96HV5 264 aa4.75□□□□□ -1.65
VPS13C-208ENST00000559119 NPFFR1Q9GZQ6 430 aa4.75□□□□□ -1.65
VPS13C-208ENST00000559119 CLPBQ9H078 707 aa4.75□□□□□ -1.65
VPS13C-208ENST00000559119 ABHD16BQ9H3Z7 469 aa4.75□□□□□ -1.65
VPS13C-208ENST00000559119 UPB1Q9UBR1 384 aa4.75□□□□□ -1.65
VPS13C-208ENST00000559119 HERC5Q9UII4 1024 aaKnown RBP4.75□□□□□ -1.65
VPS13C-208ENST00000559119 DAPP1Q9UN19 280 aa4.75□□□□□ -1.65
VPS13C-208ENST00000559119 C19orf53Q9UNZ5 99 aaPredicted RBP4.75□□□□□ -1.65
VPS13C-208ENST00000559119 GOLGA6L3A6NEY3 463 aa4.74□□□□□ -1.65
VPS13C-208ENST00000559119 PRAC2D3DTV9 90 aa4.74□□□□□ -1.65
VPS13C-208ENST00000559119 STRNO43815 780 aa4.74□□□□□ -1.65
VPS13C-208ENST00000559119 TFRCP02786 760 aaKnown RBP4.74□□□□□ -1.65
VPS13C-208ENST00000559119 ITGA2BP08514 1039 aa4.74□□□□□ -1.65
VPS13C-208ENST00000559119 YWHAQP27348 245 aa4.74□□□□□ -1.65
VPS13C-208ENST00000559119 GPR12P47775 334 aa4.74□□□□□ -1.65
VPS13C-208ENST00000559119 BTKQ06187 659 aa4.74□□□□□ -1.65
VPS13C-208ENST00000559119 PTK2BQ14289 1009 aa4.74□□□□□ -1.65
VPS13C-208ENST00000559119 GALNTL6Q49A17 601 aa4.74□□□□□ -1.65
VPS13C-208ENST00000559119 PLEKHO1Q53GL0 409 aaPredicted RBP4.74□□□□□ -1.65
VPS13C-208ENST00000559119 PMS2CLQ68D20 193 aa4.74□□□□□ -1.65
VPS13C-208ENST00000559119 RHBDF2Q6PJF5 856 aa4.74□□□□□ -1.65
VPS13C-208ENST00000559119 ZNF771Q7L3S4 317 aaPredicted RBP4.74□□□□□ -1.65
VPS13C-208ENST00000559119 BRSK2Q8IWQ3 736 aa4.74□□□□□ -1.65
VPS13C-208ENST00000559119 GALNT15Q8N3T1 639 aa4.74□□□□□ -1.65
VPS13C-208ENST00000559119 NEK9Q8TD19 979 aa4.74□□□□□ -1.65
VPS13C-208ENST00000559119 TBC1D22AQ8WUA7 517 aa4.74□□□□□ -1.65
VPS13C-208ENST00000559119 DDX23Q9BUQ8 820 aaKnown RBP4.74□□□□□ -1.65
VPS13C-208ENST00000559119 FNIP2Q9P278 1114 aa4.74□□□□□ -1.65
VPS13C-208ENST00000559119 RCE1Q9Y256 329 aa4.74□□□□□ -1.65
VPS13C-208ENST00000559119 PCDHAC2Q9Y5I4 1007 aa4.74□□□□□ -1.65
VPS13C-208ENST00000559119 SHROOM4Q9ULL8 1493 aa4.74□□□□□ -1.65
VPS13C-208ENST00000559119 TULP2O00295 520 aa4.73□□□□□ -1.65
VPS13C-208ENST00000559119 CHL1O00533 1208 aa4.73□□□□□ -1.65
VPS13C-208ENST00000559119 ACTL6BO94805 426 aa4.73□□□□□ -1.65
VPS13C-208ENST00000559119 CBX6O95503 412 aa4.73□□□□□ -1.65
VPS13C-208ENST00000559119 CH25HO95992 272 aa4.73□□□□□ -1.65
VPS13C-208ENST00000559119 AFPP02771 609 aaKnown RBP4.73□□□□□ -1.65
VPS13C-208ENST00000559119 SERPINA4P29622 427 aa4.73□□□□□ -1.65
VPS13C-208ENST00000559119 ADORA2A-AS1P86434 159 aa4.73□□□□□ -1.65
VPS13C-208ENST00000559119 ARL16Q0P5N6 197 aa4.73□□□□□ -1.65
VPS13C-208ENST00000559119 HDAC1Q13547 482 aaPredicted RBP4.73□□□□□ -1.65
VPS13C-208ENST00000559119 DGAT2L7PQ6IED9 249 aa4.73□□□□□ -1.65
VPS13C-208ENST00000559119 ADAM5Q6NVV9 412 aa4.73□□□□□ -1.65
VPS13C-208ENST00000559119 C9orf139Q6ZV77 190 aa4.73□□□□□ -1.65
VPS13C-208ENST00000559119 NEK10Q6ZWH5 1172 aa4.73□□□□□ -1.65
VPS13C-208ENST00000559119 SLC44A2Q8IWA5 706 aaPredicted RBP4.73□□□□□ -1.65
VPS13C-208ENST00000559119 PGBD5Q8N414 524 aa4.73□□□□□ -1.65
VPS13C-208ENST00000559119 GPT2Q8TD30 523 aa4.73□□□□□ -1.65
VPS13C-208ENST00000559119 ATOH1Q92858 354 aaPredicted RBP4.73□□□□□ -1.65
VPS13C-208ENST00000559119 CD101Q93033 1021 aa4.73□□□□□ -1.65
VPS13C-208ENST00000559119 C3orf49Q96BT1 292 aa4.73□□□□□ -1.65
VPS13C-208ENST00000559119 SGCZQ96LD1 299 aa4.73□□□□□ -1.65
VPS13C-208ENST00000559119 UHRF2Q96PU4 802 aa4.73□□□□□ -1.65
VPS13C-208ENST00000559119 KATNAL1Q9BW62 490 aa4.73□□□□□ -1.65
VPS13C-208ENST00000559119 CLK4Q9HAZ1 481 aaKnown RBP4.73□□□□□ -1.65
VPS13C-208ENST00000559119 OBP2BQ9NPH6 170 aa4.73□□□□□ -1.65
VPS13C-208ENST00000559119 TMLHEQ9NVH6 421 aa4.73□□□□□ -1.65
VPS13C-208ENST00000559119 TMEM51Q9NW97 253 aa4.73□□□□□ -1.65
VPS13C-208ENST00000559119 NDUFAF4Q9P032 175 aa4.73□□□□□ -1.65
VPS13C-208ENST00000559119 PAM16Q9Y3D7 125 aa4.73□□□□□ -1.65
VPS13C-208ENST00000559119 TARSL2A2RTX5 802 aaKnown RBP4.72□□□□□ -1.65
VPS13C-208ENST00000559119 FFAR2O15552 330 aa4.72□□□□□ -1.65
VPS13C-208ENST00000559119 AP2B1P63010 937 aa4.72□□□□□ -1.65
VPS13C-208ENST00000559119 CYP4A11Q02928 519 aa4.72□□□□□ -1.65
VPS13C-208ENST00000559119 ST3GAL1Q11201 340 aa4.72□□□□□ -1.65
VPS13C-208ENST00000559119 PICALMQ13492 652 aa4.72□□□□□ -1.65
VPS13C-208ENST00000559119 DCTN1Q14203 1278 aa4.72□□□□□ -1.65
VPS13C-208ENST00000559119 TTC22Q5TAA0 569 aa4.72□□□□□ -1.65
VPS13C-208ENST00000559119 TBC1D9BQ66K14 1250 aa4.72□□□□□ -1.65
VPS13C-208ENST00000559119 GGT6Q6P531 493 aa4.72□□□□□ -1.65
VPS13C-208ENST00000559119 KLHL17Q6TDP4 642 aa4.72□□□□□ -1.65
VPS13C-208ENST00000559119 UNQ6126/PRO20091Q6UXV3 157 aa4.72□□□□□ -1.65
VPS13C-208ENST00000559119 SYNE3Q6ZMZ3 975 aa4.72□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms