RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 ZNF567Q8N184 647 aa9.77□□□□□ -0.85
CUX1-216ENST00000558469 BBS5Q8N3I7 341 aa9.77□□□□□ -0.85
CUX1-216ENST00000558469 PGBD5Q8N414 524 aa9.77□□□□□ -0.85
CUX1-216ENST00000558469 TEX26Q8N6G2 289 aa9.77□□□□□ -0.85
CUX1-216ENST00000558469 ZNF513Q8N8E2 541 aaPredicted RBP9.77□□□□□ -0.85
CUX1-216ENST00000558469 GLIS1Q8NBF1 620 aa9.77□□□□□ -0.85
CUX1-216ENST00000558469 TSEN2Q8NCE0 465 aaKnown RBP9.77□□□□□ -0.85
CUX1-216ENST00000558469 CCDC26Q8TAB7 109 aa9.77□□□□□ -0.85
CUX1-216ENST00000558469 CCDC110Q8TBZ0 833 aa9.77□□□□□ -0.85
CUX1-216ENST00000558469 CASKIN2Q8WXE0 1202 aa9.77□□□□□ -0.85
CUX1-216ENST00000558469 MYO19Q96H55 970 aa9.77□□□□□ -0.85
CUX1-216ENST00000558469 RUNDC3BQ96NL0 473 aa9.77□□□□□ -0.85
CUX1-216ENST00000558469 ACOX2Q99424 681 aa9.77□□□□□ -0.85
CUX1-216ENST00000558469 VAT1Q99536 393 aa9.77□□□□□ -0.85
CUX1-216ENST00000558469 IL12RB2Q99665 862 aa9.77□□□□□ -0.85
CUX1-216ENST00000558469 CINPQ9BW66 212 aaPredicted RBP9.77□□□□□ -0.85
CUX1-216ENST00000558469 TNKS2Q9H2K2 1166 aa9.77□□□□□ -0.85
CUX1-216ENST00000558469 PLSCR2Q9NRY7 297 aa9.77□□□□□ -0.85
CUX1-216ENST00000558469 KLHL8Q9P2G9 620 aaPredicted RBP9.77□□□□□ -0.85
CUX1-216ENST00000558469 THAP10Q9P2Z0 257 aaPredicted RBP9.77□□□□□ -0.85
CUX1-216ENST00000558469 SEPT3Q9UH03 358 aa9.77□□□□□ -0.85
CUX1-216ENST00000558469 HCN2Q9UL51 889 aa9.77□□□□□ -0.85
CUX1-216ENST00000558469 SLC8A2Q9UPR5 921 aa9.77□□□□□ -0.85
CUX1-216ENST00000558469 MRPS17Q9Y2R5 130 aaKnown RBP9.77□□□□□ -0.85
CUX1-216ENST00000558469 STARD13Q9Y3M8 1113 aa9.77□□□□□ -0.85
CUX1-216ENST00000558469 KANSL1LA0AUZ9 987 aa9.76□□□□□ -0.85
CUX1-216ENST00000558469 TTC24A2A3L6 582 aaPredicted RBP9.76□□□□□ -0.85
CUX1-216ENST00000558469 WASH3PC4AMC7 463 aa9.76□□□□□ -0.85
CUX1-216ENST00000558469 F5H423 210 aaPredicted RBP9.76□□□□□ -0.85
CUX1-216ENST00000558469 MUSKO15146 869 aa9.76□□□□□ -0.85
CUX1-216ENST00000558469 TTI1O43156 1089 aa9.76□□□□□ -0.85
CUX1-216ENST00000558469 ZBTB24O43167 697 aaPredicted RBP9.76□□□□□ -0.85
CUX1-216ENST00000558469 ATP9BO43861 1147 aa9.76□□□□□ -0.85
CUX1-216ENST00000558469 BNIP3LO60238 219 aa9.76□□□□□ -0.85
CUX1-216ENST00000558469 ZNF821O75541 412 aaPredicted RBP9.76□□□□□ -0.85
CUX1-216ENST00000558469 GCATO75600 419 aa9.76□□□□□ -0.85
CUX1-216ENST00000558469 ECEL1O95672 775 aa9.76□□□□□ -0.85
CUX1-216ENST00000558469 GAS8O95995 478 aa9.76□□□□□ -0.85
CUX1-216ENST00000558469 KRT14P02533 472 aa9.76□□□□□ -0.85
CUX1-216ENST00000558469 HLA-DQB2P05538 268 aa9.76□□□□□ -0.85
CUX1-216ENST00000558469 ZSCAN5DPP0CG00 497 aa9.76□□□□□ -0.85
CUX1-216ENST00000558469 HLA-EP13747 358 aa9.76□□□□□ -0.85
CUX1-216ENST00000558469 HNRNPLP14866 589 aaKnown RBP eCLIP9.76□□□□□ -0.852e-14■■■■■ 48.8
CUX1-216ENST00000558469 WASP42768 502 aa9.76□□□□□ -0.85
CUX1-216ENST00000558469 PTGIRP43119 386 aa9.76□□□□□ -0.85
CUX1-216ENST00000558469 KIR2DL1P43626 348 aaPredicted RBP9.76□□□□□ -0.85
CUX1-216ENST00000558469 MAXP61244 160 aa9.76□□□□□ -0.85
CUX1-216ENST00000558469 MRPS25P82663 173 aaKnown RBP9.76□□□□□ -0.85
CUX1-216ENST00000558469 CCINQ13939 588 aa9.76□□□□□ -0.85
CUX1-216ENST00000558469 DHX34Q14147 1143 aaKnown RBP9.76□□□□□ -0.85
CUX1-216ENST00000558469 UBXN2BQ14CS0 331 aa9.76□□□□□ -0.85
CUX1-216ENST00000558469 E2F5Q15329 346 aa9.76□□□□□ -0.85
CUX1-216ENST00000558469 PPP1R7Q15435 360 aa9.76□□□□□ -0.85
CUX1-216ENST00000558469 P3H1Q32P28 736 aa9.76□□□□□ -0.85
CUX1-216ENST00000558469 FBXO43Q4G163 708 aa9.76□□□□□ -0.85
CUX1-216ENST00000558469 DGKKQ5KSL6 1271 aa9.76□□□□□ -0.85
CUX1-216ENST00000558469 ATXN7L2Q5T6C5 722 aaPredicted RBP9.76□□□□□ -0.85
CUX1-216ENST00000558469 C22orf39Q6P5X5 142 aa9.76□□□□□ -0.85
CUX1-216ENST00000558469 SERPINA13PQ6UXR4 307 aa9.76□□□□□ -0.85
CUX1-216ENST00000558469 ARHGEF18Q6ZSZ5 1173 aa9.76□□□□□ -0.85
CUX1-216ENST00000558469 CHPFQ8IZ52 775 aa9.76□□□□□ -0.85
CUX1-216ENST00000558469 MMGT1Q8N4V1 131 aa9.76□□□□□ -0.85
CUX1-216ENST00000558469 TAB3Q8N5C8 712 aaPredicted RBP9.76□□□□□ -0.85
CUX1-216ENST00000558469 CNTD1Q8N815 330 aa9.76□□□□□ -0.85
CUX1-216ENST00000558469 ZNF366Q8N895 744 aa9.76□□□□□ -0.85
CUX1-216ENST00000558469 KDM1BQ8NB78 822 aa9.76□□□□□ -0.85
CUX1-216ENST00000558469 NOA1Q8NC60 698 aaKnown RBP9.76□□□□□ -0.85
CUX1-216ENST00000558469 LRRN4CLQ8ND94 238 aa9.76□□□□□ -0.85
CUX1-216ENST00000558469 SLCO2A1Q92959 643 aa9.76□□□□□ -0.85
CUX1-216ENST00000558469 ISG20Q96AZ6 181 aaKnown RBP9.76□□□□□ -0.85
CUX1-216ENST00000558469 RTP4Q96DX8 246 aa9.76□□□□□ -0.85
CUX1-216ENST00000558469 ZNF419Q96HQ0 510 aaPredicted RBP9.76□□□□□ -0.85
CUX1-216ENST00000558469 EXOC2Q96KP1 924 aa9.76□□□□□ -0.85
CUX1-216ENST00000558469 TEKT5Q96M29 485 aa9.76□□□□□ -0.85
CUX1-216ENST00000558469 SPATA13Q96N96 652 aa9.76□□□□□ -0.85
CUX1-216ENST00000558469 HS3ST6Q96QI5 342 aa9.76□□□□□ -0.85
CUX1-216ENST00000558469 PSKH2Q96QS6 385 aa9.76□□□□□ -0.85
CUX1-216ENST00000558469 TM6SF2Q9BZW4 377 aa9.76□□□□□ -0.85
CUX1-216ENST00000558469 FOXQ1Q9C009 403 aa9.76□□□□□ -0.85
CUX1-216ENST00000558469 CEP44Q9C0F1 390 aa9.76□□□□□ -0.85
CUX1-216ENST00000558469 TMEM245Q9H330 911 aa9.76□□□□□ -0.85
CUX1-216ENST00000558469 MTG2Q9H4K7 406 aa9.76□□□□□ -0.85
CUX1-216ENST00000558469 TBC1D17Q9HA65 648 aa9.76□□□□□ -0.85
CUX1-216ENST00000558469 HAUS2Q9NVX0 235 aa9.76□□□□□ -0.85
CUX1-216ENST00000558469 CACNA2D2Q9NY47 1150 aa9.76□□□□□ -0.85
CUX1-216ENST00000558469 LHX3Q9UBR4 397 aa9.76□□□□□ -0.85
CUX1-216ENST00000558469 TRHDEQ9UKU6 1024 aa9.76□□□□□ -0.85
CUX1-216ENST00000558469 ATP8A1Q9Y2Q0 1164 aa9.76□□□□□ -0.85
CUX1-216ENST00000558469 MTF2Q9Y483 593 aaPredicted RBP9.76□□□□□ -0.85
CUX1-216ENST00000558469 BDP1A6H8Y1 2624 aa9.75□□□□□ -0.85
CUX1-216ENST00000558469 VCANP13611 3396 aa9.75□□□□□ -0.85
CUX1-216ENST00000558469 EDDM13A0A1B0GTR0 161 aa9.75□□□□□ -0.85
CUX1-216ENST00000558469 FAM170BA6NMN3 283 aa9.75□□□□□ -0.85
CUX1-216ENST00000558469 NPC1O15118 1278 aa9.75□□□□□ -0.85
CUX1-216ENST00000558469 RAD51CO43502 376 aa9.75□□□□□ -0.85
CUX1-216ENST00000558469 OPHN1O60890 802 aa9.75□□□□□ -0.85
CUX1-216ENST00000558469 RNF40O75150 1001 aa9.75□□□□□ -0.85
CUX1-216ENST00000558469 GJB3O75712 270 aa9.75□□□□□ -0.85
CUX1-216ENST00000558469 KLF8O95600 359 aaPredicted RBP9.75□□□□□ -0.85
CUX1-216ENST00000558469 EPHX1P07099 455 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms